[ { "id": "Q7TMD5-1.240.240", "start_pos": 240, "end_pos": 240, "uniprot_canonical_ac": "Q7TMD5-1", "length": 736, "uniprot_id": "ZC3HE_RAT", "protein_name": "Zinc finger CCCH domain-containing protein 14", "refseq_ac": "", "refseq_name": "", "gene_name": "Zc3h14", "gene_names_uniprotkb": "Zc3h14; Npuk68", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRNADTGTHLNRPQLQQQQS", "down_seq": "THTAKQLDGQSSQVYEAGRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "site_lbl": "Ser240" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "240", "end_pos": "240" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TMD5-1.309.309", "start_pos": 309, "end_pos": 309, "uniprot_canonical_ac": "Q7TMD5-1", "length": 736, "uniprot_id": "ZC3HE_RAT", "protein_name": "Zinc finger CCCH domain-containing protein 14", "refseq_ac": "", "refseq_name": "", "gene_name": "Zc3h14", "gene_names_uniprotkb": "Zc3h14; Npuk68", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ENFRKRKLPVVSSVVKVKRF", "down_seq": "HDGEEEEEDEDYGTRVGSLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "site_lbl": "Ser309" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "240", "end_pos": "240" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q7TMD5-1.327.327", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TMD5-1.327.327", "start_pos": 327, "end_pos": 327, "uniprot_canonical_ac": "Q7TMD5-1", "length": 736, "uniprot_id": "ZC3HE_RAT", "protein_name": "Zinc finger CCCH domain-containing protein 14", "refseq_ac": "", "refseq_name": "", "gene_name": "Zc3h14", "gene_names_uniprotkb": "Zc3h14; Npuk68", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RFSHDGEEEEEDEDYGTRVG", "down_seq": "LSSSVSVPAKPERRPSLPPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "site_lbl": "Ser327" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "240", "end_pos": "240" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q7TMD5-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q7TMD5-1.343.343", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TMD5-1.343.343", "start_pos": 343, "end_pos": 343, "uniprot_canonical_ac": "Q7TMD5-1", "length": 736, "uniprot_id": "ZC3HE_RAT", "protein_name": "Zinc finger CCCH domain-containing protein 14", "refseq_ac": "", "refseq_name": "", "gene_name": "Zc3h14", "gene_names_uniprotkb": "Zc3h14; Npuk68", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRVGSLSSSVSVPAKPERRP", "down_seq": "LPPSKQANKNLILKAISEAQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "site_lbl": "Ser343" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "240", "end_pos": "240" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q7TMD5-1.327.327", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TMD5-1.390.390", "start_pos": 390, "end_pos": 390, "uniprot_canonical_ac": "Q7TMD5-1", "length": 736, "uniprot_id": "ZC3HE_RAT", "protein_name": "Zinc finger CCCH domain-containing protein 14", "refseq_ac": "", "refseq_name": "", "gene_name": "Zc3h14", "gene_names_uniprotkb": "Zc3h14; Npuk68", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TNYPAVPQKQTLPVAPRTRT", "down_seq": "QEEVLAEMVQGQNRAPRISP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "site_lbl": "Ser390" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "240", "end_pos": "240" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q7TMD5-1.409.409", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TMD5-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "Q7TMD5-1", "length": 736, "uniprot_id": "ZC3HE_RAT", "protein_name": "Zinc finger CCCH domain-containing protein 14", "refseq_ac": "", "refseq_name": "", "gene_name": "Zc3h14", "gene_names_uniprotkb": "Zc3h14; Npuk68", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TSQEEVLAEMVQGQNRAPRI", "down_seq": "PPVKEEEAKGDNAEKIEGTQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "site_lbl": "Ser409" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "240", "end_pos": "240" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q7TMD5-1.390.390", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TMD5-1.498.498", "start_pos": 498, "end_pos": 498, "uniprot_canonical_ac": "Q7TMD5-1", "length": 736, "uniprot_id": "ZC3HE_RAT", "protein_name": "Zinc finger CCCH domain-containing protein 14", "refseq_ac": "", "refseq_name": "", "gene_name": "Zc3h14", "gene_names_uniprotkb": "Zc3h14; Npuk68", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IVVTPNQDSGMKTADALRVL", "down_seq": "GHLMQTRDLVQPDKPASPKF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "site_lbl": "Ser498" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "240", "end_pos": "240" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "Q7TMD5-1.515.515", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TMD5-1.515.515", "start_pos": 515, "end_pos": 515, "uniprot_canonical_ac": "Q7TMD5-1", "length": 736, "uniprot_id": "ZC3HE_RAT", "protein_name": "Zinc finger CCCH domain-containing protein 14", "refseq_ac": "", "refseq_name": "", "gene_name": "Zc3h14", "gene_names_uniprotkb": "Zc3h14; Npuk68", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" }, { "database": "iPTMnet", "id": "Q7TMD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TMD5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q7TMD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TMD5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RVLSGHLMQTRDLVQPDKPA", "down_seq": "PKFIVTLDGVPSPPGYMSDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q7TMD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TMD5" } ], "site_lbl": "Ser515" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "240", "end_pos": "240" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q7TMD5-1.498.498", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q7TMD5-1.527.527", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7TMD5-1.527.527", "start_pos": 527, "end_pos": 527, "uniprot_canonical_ac": "Q7TMD5-1", "length": 736, "uniprot_id": "ZC3HE_RAT", "protein_name": "Zinc finger CCCH domain-containing protein 14", "refseq_ac": "", "refseq_name": "", "gene_name": "Zc3h14", "gene_names_uniprotkb": "Zc3h14; Npuk68", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVQPDKPASPKFIVTLDGVP", "down_seq": "PPGYMSDQEEEMCFEGMKPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "site_lbl": "Ser527" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "240", "end_pos": "240" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q7TMD5-1.515.515", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TMD5-1.620.620", "start_pos": 620, "end_pos": 620, "uniprot_canonical_ac": "Q7TMD5-1", "length": 736, "uniprot_id": "ZC3HE_RAT", "protein_name": "Zinc finger CCCH domain-containing protein 14", "refseq_ac": "", "refseq_name": "", "gene_name": "Zc3h14", "gene_names_uniprotkb": "Zc3h14; Npuk68", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RCKYWPACKNGDECVYHHPI", "down_seq": "PCKAFPNCKFAEKCLFVHPN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "site_lbl": "Ser620" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "240", "end_pos": "240" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TMD5-1.85.85", "start_pos": 85, "end_pos": 85, "uniprot_canonical_ac": "Q7TMD5-1", "length": 736, "uniprot_id": "ZC3HE_RAT", "protein_name": "Zinc finger CCCH domain-containing protein 14", "refseq_ac": "", "refseq_name": "", "gene_name": "Zc3h14", "gene_names_uniprotkb": "Zc3h14; Npuk68", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" }, { "database": "iPTMnet", "id": "Q7TMD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TMD5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q7TMD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TMD5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WLHGVLDKLRSVTTEPSSLK", "down_seq": "PDTSIFDSNVPSNKSSFSRG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TMD5", "url": "https://www.uniprot.org/uniprotkb/Q7TMD5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q7TMD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TMD5" } ], "site_lbl": "Ser85" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "240", "end_pos": "240" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "327", "end_pos": "327" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "515", "end_pos": "515" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0CG51-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "P0CG51-1", "length": 305, "uniprot_id": "UBB_RAT", "protein_name": "Polyubiquitin-B", "refseq_ac": "NP_001396021", "refseq_name": "polyubiquitin-B", "gene_name": "Ubb", "gene_names_uniprotkb": "Ubb", "gene_names_refseq": "Ubb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PINK1 autophosphorylation is required for ubiquitin recognition.", "journal": "EMBO reports", "date": "2018", "authors": "Rasool S, Soya N, Truong L, Croteau N, Lukacs GL, Trempe JF", "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" }, { "database": "iPTMnet", "id": "P0CG51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0CG51" } ], "reference": [ { "type": "PubMed", "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881" } ] } ], "crossref": [ { "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Q", "start_aa": "Q", "up_seq": "KIQDKEGIPPDQQRLIFAGK", "down_seq": "LEDGRTLSDYNIQKESTLHL", "mutagenesis": [ { "sequence_org": "Q", "sequence_mut": "E", "comment": "Rate of phosphorylation by an insect Pink1 is slightly decreased.", "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" }, { "database": "PubMed", "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "49", "end_pos": "49" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "141", "end_pos": "141" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "P0CG51-1.63.63", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P0CG51-1.64.64", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P0CG51-1.65.65", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0CG51-1.63.63", "start_pos": 63, "end_pos": 63, "uniprot_canonical_ac": "P0CG51-1", "length": 305, "uniprot_id": "UBB_RAT", "protein_name": "Polyubiquitin-B", "refseq_ac": "NP_001396021", "refseq_name": "polyubiquitin-B", "gene_name": "Ubb", "gene_names_uniprotkb": "Ubb", "gene_names_refseq": "Ubb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PINK1 autophosphorylation is required for ubiquitin recognition.", "journal": "EMBO reports", "date": "2018", "authors": "Rasool S, Soya N, Truong L, Croteau N, Lukacs GL, Trempe JF", "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" }, { "database": "iPTMnet", "id": "P0CG51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0CG51" } ], "reference": [ { "type": "PubMed", "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881" } ] } ], "crossref": [ { "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LIFAGKQLEDGRTLSDYNIQ", "down_seq": "ESTLHLVLRLRGGMQIFVKT", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "Q", "comment": "Rate of phosphorylation by an insect Pink1 is very slightly increased.", "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" }, { "database": "PubMed", "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "49", "end_pos": "49" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "141", "end_pos": "141" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P0CG51-1.49.49", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P0CG51-1.64.64", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P0CG51-1.65.65", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0CG51-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "P0CG51-1", "length": 305, "uniprot_id": "UBB_RAT", "protein_name": "Polyubiquitin-B", "refseq_ac": "NP_001396021", "refseq_name": "polyubiquitin-B", "gene_name": "Ubb", "gene_names_uniprotkb": "Ubb", "gene_names_refseq": "Ubb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PINK1 autophosphorylation is required for ubiquitin recognition.", "journal": "EMBO reports", "date": "2018", "authors": "Rasool S, Soya N, Truong L, Croteau N, Lukacs GL, Trempe JF", "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" }, { "database": "iPTMnet", "id": "P0CG51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0CG51" } ], "reference": [ { "type": "PubMed", "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881" } ] } ], "crossref": [ { "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "IFAGKQLEDGRTLSDYNIQK", "down_seq": "STLHLVLRLRGGMQIFVKTL", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "Q", "comment": "Rate of phosphorylation by an insect Pink1 is increased.", "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" }, { "database": "PubMed", "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "49", "end_pos": "49" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "141", "end_pos": "141" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P0CG51-1.49.49", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P0CG51-1.63.63", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P0CG51-1.65.65", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0CG51-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "P0CG51-1", "length": 305, "uniprot_id": "UBB_RAT", "protein_name": "Polyubiquitin-B", "refseq_ac": "NP_001396021", "refseq_name": "polyubiquitin-B", "gene_name": "Ubb", "gene_names_uniprotkb": "Ubb", "gene_names_refseq": "Ubb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PINK1 autophosphorylation is required for ubiquitin recognition.", "journal": "EMBO reports", "date": "2018", "authors": "Rasool S, Soya N, Truong L, Croteau N, Lukacs GL, Trempe JF", "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" }, { "database": "iPTMnet", "id": "P0CG51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0CG51" } ], "reference": [ { "type": "PubMed", "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881" } ] } ], "crossref": [ { "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "MQIFVKT", "down_seq": "TGKTITLEVEPSDTIENVKA", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "N", "comment": "Rate of phosphorylation by an insect Pink1 is very slightly increased.", "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" }, { "database": "PubMed", "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "49", "end_pos": "49" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "141", "end_pos": "141" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P0CG51-1.141.141", "start_pos": 141, "end_pos": 141, "uniprot_canonical_ac": "P0CG51-1", "length": 305, "uniprot_id": "UBB_RAT", "protein_name": "Polyubiquitin-B", "refseq_ac": "NP_001396021", "refseq_name": "polyubiquitin-B", "gene_name": "Ubb", "gene_names_uniprotkb": "Ubb", "gene_names_refseq": "Ubb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FAGKQLEDGRTLSDYNIQKE", "down_seq": "TLHLVLRLRGGMQIFVKTLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" } ], "site_lbl": "Ser141" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "49", "end_pos": "49" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "141", "end_pos": "141" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P0CG51-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "P0CG51-1", "length": 305, "uniprot_id": "UBB_RAT", "protein_name": "Polyubiquitin-B", "refseq_ac": "NP_001396021", "refseq_name": "polyubiquitin-B", "gene_name": "Ubb", "gene_names_uniprotkb": "Ubb", "gene_names_refseq": "Ubb", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PINK1 autophosphorylation is required for ubiquitin recognition.", "journal": "EMBO reports", "date": "2018", "authors": "Rasool S, Soya N, Truong L, Croteau N, Lukacs GL, Trempe JF", "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" }, { "database": "iPTMnet", "id": "P0CG51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0CG51" } ], "reference": [ { "type": "PubMed", "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881" } ] } ], "crossref": [ { "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P0CG51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0CG51", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FAGKQLEDGRTLSDYNIQKE", "down_seq": "TLHLVLRLRGGMQIFVKTLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PINK1", "evidence": [ { "database": "UniProtKB", "id": "P0CG51", "url": "https://www.uniprot.org/uniprotkb/P0CG51" }, { "database": "iPTMnet", "id": "P0CG51", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P0CG51" }, { "database": "PubMed", "id": "29475881", "url": "https://glygen.org/publication/PubMed/29475881" } ], "site_lbl": "Ser65" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "49", "end_pos": "49" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "141", "end_pos": "141" }, { "start_pos": "65", "end_pos": "65" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P0CG51-1.49.49", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P0CG51-1.63.63", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P0CG51-1.64.64", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "A8WCF8-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "A8WCF8-1", "length": 266, "uniprot_id": "TPRGL_RAT", "protein_name": "Tumor protein p63-regulated gene 1-like protein", "refseq_ac": "NP_001103788", "refseq_name": "tumor protein p63-regulated gene 1-like protein isoform 1", "gene_name": "Tprg1l", "gene_names_uniprotkb": "Tprg1l; Mover", "gene_names_refseq": "Tprg1l; mover", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A8WCF8", "url": "https://www.uniprot.org/uniprotkb/A8WCF8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A8WCF8", "url": "https://www.uniprot.org/uniprotkb/A8WCF8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MLQLRDTVD", "down_seq": "AGTSPTAVLAAGEDAGAGRQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "A8WCF8", "url": "https://www.uniprot.org/uniprotkb/A8WCF8" } ], "site_lbl": "Ser10" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "34", "end_pos": "34" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "A8WCF8-1.13.13", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "A8WCF8-1.14.14", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "A8WCF8-1.13.13", "start_pos": 13, "end_pos": 13, "uniprot_canonical_ac": "A8WCF8-1", "length": 266, "uniprot_id": "TPRGL_RAT", "protein_name": "Tumor protein p63-regulated gene 1-like protein", "refseq_ac": "NP_001103788", "refseq_name": "tumor protein p63-regulated gene 1-like protein isoform 1", "gene_name": "Tprg1l", "gene_names_uniprotkb": "Tprg1l; Mover", "gene_names_refseq": "Tprg1l; mover", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A8WCF8", "url": "https://www.uniprot.org/uniprotkb/A8WCF8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Mover is a homomeric phospho-protein present on synaptic vesicles.", "journal": "PloS one", "date": "2013", "authors": "Ahmed S, Wittenmayer N, Kremer T, Hoeber J, Kiran Akula A, Urlaub H, Islinger M, Kirsch J, Dean C, Dresbach T", "evidence": [ { "database": "UniProtKB", "id": "A8WCF8", "url": "https://www.uniprot.org/uniprotkb/A8WCF8" }, { "database": "iPTMnet", "id": "A8WCF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8WCF8" } ], "reference": [ { "type": "PubMed", "id": "23723986", "url": "https://glygen.org/publication/PubMed/23723986" } ] } ], "crossref": [ { "id": "A8WCF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8WCF8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23723986", "url": "https://glygen.org/publication/PubMed/23723986", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MLQLRDTVDSAG", "down_seq": "SPTAVLAAGEDAGAGRQGAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "A8WCF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8WCF8" }, { "database": "PubMed", "id": "23723986", "url": "https://glygen.org/publication/PubMed/23723986" } ], "site_lbl": "Thr13" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "34", "end_pos": "34" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "A8WCF8-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "A8WCF8-1.14.14", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "A8WCF8-1.14.14", "start_pos": 14, "end_pos": 14, "uniprot_canonical_ac": "A8WCF8-1", "length": 266, "uniprot_id": "TPRGL_RAT", "protein_name": "Tumor protein p63-regulated gene 1-like protein", "refseq_ac": "NP_001103788", "refseq_name": "tumor protein p63-regulated gene 1-like protein isoform 1", "gene_name": "Tprg1l", "gene_names_uniprotkb": "Tprg1l; Mover", "gene_names_refseq": "Tprg1l; mover", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A8WCF8", "url": "https://www.uniprot.org/uniprotkb/A8WCF8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "A8WCF8", "url": "https://www.uniprot.org/uniprotkb/A8WCF8" }, { "database": "iPTMnet", "id": "A8WCF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8WCF8" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "A8WCF8", "url": "https://www.uniprot.org/uniprotkb/A8WCF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "A8WCF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8WCF8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MLQLRDTVDSAGT", "down_seq": "PTAVLAAGEDAGAGRQGAGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "A8WCF8", "url": "https://www.uniprot.org/uniprotkb/A8WCF8" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "A8WCF8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A8WCF8" } ], "site_lbl": "Ser14" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "34", "end_pos": "34" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "A8WCF8-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "A8WCF8-1.13.13", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "A8WCF8-1.34.34", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "A8WCF8-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "A8WCF8-1", "length": 266, "uniprot_id": "TPRGL_RAT", "protein_name": "Tumor protein p63-regulated gene 1-like protein", "refseq_ac": "NP_001103788", "refseq_name": "tumor protein p63-regulated gene 1-like protein isoform 1", "gene_name": "Tprg1l", "gene_names_uniprotkb": "Tprg1l; Mover", "gene_names_refseq": "Tprg1l; mover", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A8WCF8", "url": "https://www.uniprot.org/uniprotkb/A8WCF8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A8WCF8", "url": "https://www.uniprot.org/uniprotkb/A8WCF8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SPTAVLAAGEDAGAGRQGAG", "down_seq": "PLRQTLWPLNVHDPTRRARV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "A8WCF8", "url": "https://www.uniprot.org/uniprotkb/A8WCF8" } ], "site_lbl": "Thr34" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "34", "end_pos": "34" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "A8WCF8-1.14.14", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q80U96-1.1031.1031", "start_pos": 1031, "end_pos": 1031, "uniprot_canonical_ac": "Q80U96-1", "length": 1071, "uniprot_id": "XPO1_RAT", "protein_name": "Exportin-1", "refseq_ac": "NP_445942", "refseq_name": "exportin-1", "gene_name": "Xpo1", "gene_names_uniprotkb": "Xpo1; Crm1", "gene_names_refseq": "Xpo1; exp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FKEHLRDFLVQIKEFAGEDT", "down_seq": "DLFLEERETALRQAQEEKHK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" } ], "site_lbl": "Ser1031" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "966", "end_pos": "966" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q80U96-1.391.391", "start_pos": 391, "end_pos": 391, "uniprot_canonical_ac": "Q80U96-1", "length": 1071, "uniprot_id": "XPO1_RAT", "protein_name": "Exportin-1", "refseq_ac": "NP_445942", "refseq_name": "exportin-1", "gene_name": "Xpo1", "gene_names_uniprotkb": "Xpo1; Crm1", "gene_names_refseq": "Xpo1; exp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EYWNHLAAELYRESPFSTSA", "down_seq": "PLLSGSQHFDIPPRRQLYLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" } ], "site_lbl": "Ser391" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "966", "end_pos": "966" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q80U96-1.448.448", "start_pos": 448, "end_pos": 448, "uniprot_canonical_ac": "Q80U96-1", "length": 1071, "uniprot_id": "XPO1_RAT", "protein_name": "Exportin-1", "refseq_ac": "NP_445942", "refseq_name": "exportin-1", "gene_name": "Xpo1", "gene_names_uniprotkb": "Xpo1; Crm1", "gene_names_refseq": "Xpo1; exp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" }, { "database": "iPTMnet", "id": "Q80U96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q80U96" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q80U96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q80U96", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EEVLVVENDQGEVVREFMKD", "down_seq": "DSINLYKNMRETLVYLTHLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q80U96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q80U96" } ], "site_lbl": "Thr448" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "966", "end_pos": "966" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q80U96-1.450.450", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q80U96-1.454.454", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q80U96-1.450.450", "start_pos": 450, "end_pos": 450, "uniprot_canonical_ac": "Q80U96-1", "length": 1071, "uniprot_id": "XPO1_RAT", "protein_name": "Exportin-1", "refseq_ac": "NP_445942", "refseq_name": "exportin-1", "gene_name": "Xpo1", "gene_names_uniprotkb": "Xpo1; Crm1", "gene_names_refseq": "Xpo1; exp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" }, { "database": "iPTMnet", "id": "Q80U96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q80U96" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q80U96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q80U96", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VLVVENDQGEVVREFMKDTD", "down_seq": "INLYKNMRETLVYLTHLDYV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q80U96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q80U96" } ], "site_lbl": "Ser450" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "966", "end_pos": "966" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q80U96-1.448.448", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q80U96-1.454.454", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q80U96-1.454.454", "start_pos": 454, "end_pos": 454, "uniprot_canonical_ac": "Q80U96-1", "length": 1071, "uniprot_id": "XPO1_RAT", "protein_name": "Exportin-1", "refseq_ac": "NP_445942", "refseq_name": "exportin-1", "gene_name": "Xpo1", "gene_names_uniprotkb": "Xpo1; Crm1", "gene_names_refseq": "Xpo1; exp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" }, { "database": "iPTMnet", "id": "Q80U96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q80U96" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q80U96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q80U96", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ENDQGEVVREFMKDTDSINL", "down_seq": "KNMRETLVYLTHLDYVDTEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "Q80U96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q80U96" } ], "site_lbl": "Tyr454" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "966", "end_pos": "966" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q80U96-1.448.448", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q80U96-1.450.450", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q80U96-1.966.966", "start_pos": 966, "end_pos": 966, "uniprot_canonical_ac": "Q80U96-1", "length": 1071, "uniprot_id": "XPO1_RAT", "protein_name": "Exportin-1", "refseq_ac": "NP_445942", "refseq_name": "exportin-1", "gene_name": "Xpo1", "gene_names_uniprotkb": "Xpo1; Crm1", "gene_names_refseq": "Xpo1; exp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" }, { "database": "iPTMnet", "id": "Q80U96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q80U96" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q80U96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q80U96", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LAYMFNLVEEGKISTPLNPG", "down_seq": "PVSNQMFIQDYVANLLKSAF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q80U96", "url": "https://www.uniprot.org/uniprotkb/Q80U96" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q80U96", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q80U96" } ], "site_lbl": "Ser966" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "448", "end_pos": "448" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "966", "end_pos": "966" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9R1Z0-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9R1Z0-1", "length": 283, "uniprot_id": "VDAC3_RAT", "protein_name": "Non-selective voltage-gated ion channel VDAC3", "refseq_ac": "NP_112645", "refseq_name": "non-selective voltage-gated ion channel VDAC3", "gene_name": "Vdac3", "gene_names_uniprotkb": "Vdac3", "gene_names_refseq": "Vdac3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R1Z0", "url": "https://www.uniprot.org/uniprotkb/Q9R1Z0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9R1Z0", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9R1Z0" } ], "reference": [ { "type": "PubMed", "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162" } ] } ], "crossref": [ { "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9R1Z0", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9R1Z0", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "34502162", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34502162" }, { "id": "Q9R1Z0", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9R1Z0" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9R1Z0-1.4.4", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9R1Z0-1.241.241", "start_pos": 241, "end_pos": 241, "uniprot_canonical_ac": "Q9R1Z0-1", "length": 283, "uniprot_id": "VDAC3_RAT", "protein_name": "Non-selective voltage-gated ion channel VDAC3", "refseq_ac": "NP_112645", "refseq_name": "non-selective voltage-gated ion channel VDAC3", "gene_name": "Vdac3", "gene_names_uniprotkb": "Vdac3", "gene_names_refseq": "Vdac3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R1Z0", "url": "https://www.uniprot.org/uniprotkb/Q9R1Z0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Post-translational modifications of rat liver mitochondrial outer membrane proteins identified by mass spectrometry.", "journal": "Biochimica et biophysica acta", "date": "2007", "authors": "Distler AM, Kerner J, Hoppel CL", "evidence": [ { "database": "UniProtKB", "id": "Q9R1Z0", "url": "https://www.uniprot.org/uniprotkb/Q9R1Z0" }, { "database": "iPTMnet", "id": "Q9R1Z0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1Z0" } ], "reference": [ { "type": "PubMed", "id": "17478130", "url": "https://glygen.org/publication/PubMed/17478130" } ] } ], "crossref": [ { "id": "Q9R1Z0", "url": "https://www.uniprot.org/uniprotkb/Q9R1Z0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17478130", "url": "https://glygen.org/publication/PubMed/17478130", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9R1Z0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1Z0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IAAKYRLDCRTSLSAKVNNA", "down_seq": "LIGLGYTQSLRPGVKLTLSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9R1Z0", "url": "https://www.uniprot.org/uniprotkb/Q9R1Z0" }, { "database": "PubMed", "id": "17478130", "url": "https://glygen.org/publication/PubMed/17478130" }, { "database": "iPTMnet", "id": "Q9R1Z0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1Z0" } ], "site_lbl": "Ser241" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9R1Z0-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "Q9R1Z0-1", "length": 283, "uniprot_id": "VDAC3_RAT", "protein_name": "Non-selective voltage-gated ion channel VDAC3", "refseq_ac": "NP_112645", "refseq_name": "non-selective voltage-gated ion channel VDAC3", "gene_name": "Vdac3", "gene_names_uniprotkb": "Vdac3", "gene_names_refseq": "Vdac3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R1Z0", "url": "https://www.uniprot.org/uniprotkb/Q9R1Z0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Post-translational modifications of rat liver mitochondrial outer membrane proteins identified by mass spectrometry.", "journal": "Biochimica et biophysica acta", "date": "2007", "authors": "Distler AM, Kerner J, Hoppel CL", "evidence": [ { "database": "UniProtKB", "id": "Q9R1Z0", "url": "https://www.uniprot.org/uniprotkb/Q9R1Z0" }, { "database": "iPTMnet", "id": "Q9R1Z0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1Z0" } ], "reference": [ { "type": "PubMed", "id": "17478130", "url": "https://glygen.org/publication/PubMed/17478130" } ] } ], "crossref": [ { "id": "Q9R1Z0", "url": "https://www.uniprot.org/uniprotkb/Q9R1Z0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17478130", "url": "https://glygen.org/publication/PubMed/17478130", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9R1Z0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1Z0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AAKDVFNKGYGFGMVKIDLK", "down_seq": "KSCSGVEFSTSGHAYTDTGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9R1Z0", "url": "https://www.uniprot.org/uniprotkb/Q9R1Z0" }, { "database": "PubMed", "id": "17478130", "url": "https://glygen.org/publication/PubMed/17478130" }, { "database": "iPTMnet", "id": "Q9R1Z0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9R1Z0" } ], "site_lbl": "Thr33" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9R1Z0-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "Q9R1Z0-1", "length": 283, "uniprot_id": "VDAC3_RAT", "protein_name": "Non-selective voltage-gated ion channel VDAC3", "refseq_ac": "NP_112645", "refseq_name": "non-selective voltage-gated ion channel VDAC3", "gene_name": "Vdac3", "gene_names_uniprotkb": "Vdac3", "gene_names_refseq": "Vdac3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9R1Z0", "url": "https://www.uniprot.org/uniprotkb/Q9R1Z0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9R1Z0", "url": "https://www.uniprot.org/uniprotkb/Q9R1Z0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MCS", "down_seq": "PTYCDLGKAAKDVFNKGYGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9R1Z0", "url": "https://www.uniprot.org/uniprotkb/Q9R1Z0" } ], "site_lbl": "Thr4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9R1Z0-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQS2-1.139.139", "start_pos": 139, "end_pos": 139, "uniprot_canonical_ac": "Q5PQS2-1", "length": 408, "uniprot_id": "ZN365_RAT", "protein_name": "Protein ZNF365", "refseq_ac": "NP_001020316", "refseq_name": "protein ZNF365", "gene_name": "Zfp365; Znf365", "gene_names_uniprotkb": "Zfp365; Znf365; DBZ; Zfp365", "gene_names_refseq": "Zfp365; Znf365", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VAERPVSYVQTYTAVDIRAD", "down_seq": "LDAPRSSSGLPTQDTKAAFE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2" } ], "site_lbl": "Ser139" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q5PQS2-1.146.146", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQS2-1.146.146", "start_pos": 146, "end_pos": 146, "uniprot_canonical_ac": "Q5PQS2-1", "length": 408, "uniprot_id": "ZN365_RAT", "protein_name": "Protein ZNF365", "refseq_ac": "NP_001020316", "refseq_name": "protein ZNF365", "gene_name": "Zfp365; Znf365", "gene_names_uniprotkb": "Zfp365; Znf365; DBZ; Zfp365", "gene_names_refseq": "Zfp365; Znf365", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YVQTYTAVDIRADSLDAPRS", "down_seq": "SGLPTQDTKAAFEAHVREKF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2" } ], "site_lbl": "Ser146" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q5PQS2-1.139.139", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQS2-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "Q5PQS2-1", "length": 408, "uniprot_id": "ZN365_RAT", "protein_name": "Protein ZNF365", "refseq_ac": "NP_001020316", "refseq_name": "protein ZNF365", "gene_name": "Zfp365; Znf365", "gene_names_uniprotkb": "Zfp365; Znf365; DBZ; Zfp365", "gene_names_refseq": "Zfp365; Znf365", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MQQTTFEESRYRWQD", "down_seq": "LENVAVCLPFRCPRCGDHTR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5PQS2-1.176.176", "start_pos": 176, "end_pos": 176, "uniprot_canonical_ac": "Q5PQS2-1", "length": 408, "uniprot_id": "ZN365_RAT", "protein_name": "Protein ZNF365", "refseq_ac": "NP_001020316", "refseq_name": "protein ZNF365", "gene_name": "Zfp365; Znf365", "gene_names_uniprotkb": "Zfp365; Znf365; DBZ; Zfp365", "gene_names_refseq": "Zfp365; Znf365", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2" }, { "database": "iPTMnet", "id": "Q5PQS2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQS2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5PQS2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQS2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AAFEAHVREKFNRMVEAVDR", "down_seq": "IEKRIDKLTKELAQKTAELL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5PQS2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQS2" } ], "site_lbl": "Thr176" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PQS2-1.370.370", "start_pos": 370, "end_pos": 370, "uniprot_canonical_ac": "Q5PQS2-1", "length": 408, "uniprot_id": "ZN365_RAT", "protein_name": "Protein ZNF365", "refseq_ac": "NP_001020316", "refseq_name": "protein ZNF365", "gene_name": "Zfp365; Znf365", "gene_names_uniprotkb": "Zfp365; Znf365; DBZ; Zfp365", "gene_names_refseq": "Zfp365; Znf365", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2" }, { "database": "iPTMnet", "id": "Q5PQS2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQS2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5PQS2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQS2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KAKDERAGMQPAKAIHEQAE", "down_seq": "PREFFRPAKKGEHLGLSRKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PQS2", "url": "https://www.uniprot.org/uniprotkb/Q5PQS2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5PQS2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PQS2" } ], "site_lbl": "Ser370" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "370", "end_pos": "370" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6P7B7-1.265.265", "start_pos": 265, "end_pos": 265, "uniprot_canonical_ac": "Q6P7B7-1", "length": 404, "uniprot_id": "ZFY27_RAT", "protein_name": "Protrudin", "refseq_ac": "NP_954535", "refseq_name": "protrudin", "gene_name": "Zfyve27", "gene_names_uniprotkb": "Zfyve27", "gene_names_refseq": "Zfyve27", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6P7B7", "url": "https://www.uniprot.org/uniprotkb/Q6P7B7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GSALQDAGGRAVVLDSTPAP", "down_seq": "PTEDLTPGSVEEAEEAEPDE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr265", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "265", "end_pos": "265" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z327-1.412.412", "start_pos": 412, "end_pos": 412, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative proteomics identifies altered O-GlcNAcylation of structural, synaptic and memory-associated proteins in Alzheimer's disease.", "journal": "The Journal of pathology", "date": "2017", "authors": "Wang S, Yang F, Petyuk VA, Shukla AK, Monroe ME, Gritsenko MA, Rodland KD, Smith RD, Qian WJ, Gong CX, Liu T", "evidence": [ { "database": "O-GlcNAc Atlas", "id": "Q9Z327", "url": "https://oglcnac.org/atlas/detail/Q9Z327" } ], "reference": [ { "type": "PubMed", "id": "28657654", "url": "https://glygen.org/publication/PubMed/28657654" } ] } ], "crossref": [ { "id": "28657654", "url": "https://glygen.org/publication/PubMed/28657654", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z327", "url": "https://oglcnac.org/atlas/detail/Q9Z327", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KVSAPPSAASPFSREATPLS", "down_seq": "SGPPAADLMSSSLLIGMQPS", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser412", "evidence": [ { "id": "28657654", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28657654" }, { "id": "Q9Z327", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9Z327" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z327-1.744.744", "start_pos": 744, "end_pos": 744, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MEKYVIESSGHAELARCPSP", "down_seq": "MSLPSSWKYTTNAPGGFRVA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr744", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9Z327-1.742.742", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9Z327-1.746.746", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z327-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9Z327", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9Z327" } ], "reference": [ { "type": "PubMed", "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162" } ] }, { "title": "Exploring the O-GlcNAc proteome: direct identification of O-GlcNAc-modified proteins from the brain.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2004", "authors": "Khidekel N, Ficarro SB, Peters EC, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9Z327", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9Z327" } ], "reference": [ { "type": "PubMed", "id": "15340146", "url": "https://glygen.org/publication/PubMed/15340146" } ] } ], "crossref": [ { "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z327", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9Z327", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "15340146", "url": "https://glygen.org/publication/PubMed/15340146", "database": "PubMed", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "34502162", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34502162" }, { "id": "Q9Z327", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9Z327" }, { "id": "15340146", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/15340146" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z327-1.134.134", "start_pos": 134, "end_pos": 134, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVSSSPVPRVAQKPALGRST", "down_seq": "FTEKDLKEAKERSQRIAAQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "site_lbl": "Ser134" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z327-1.202.202", "start_pos": 202, "end_pos": 202, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRGQRSPKLSQEALQTGHPS", "down_seq": "PIGHAPGLSVNPTSPSKPGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "site_lbl": "Ser202" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q9Z327-1.222.222", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z327-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPIGHAPGLSVNPTSPSKPG", "down_seq": "PKHSSSQSPSRGVPGHIMEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "site_lbl": "Ser222" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9Z327-1.202.202", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z327-1.258.258", "start_pos": 258, "end_pos": 258, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" }, { "database": "iPTMnet", "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HIMEGYSEEASLLRHLEKVA", "down_seq": "EEEEVPLVVYLKENAALLTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327" } ], "site_lbl": "Ser258" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z327-1.490.490", "start_pos": 490, "end_pos": 490, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" }, { "database": "iPTMnet", "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NRTARPFGMQSPGTTSQIEQ", "down_seq": "PMMGRRHFGEKAWAPPASSM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327" } ], "site_lbl": "Ser490" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z327-1.514.514", "start_pos": 514, "end_pos": 514, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" }, { "database": "iPTMnet", "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRRHFGEKAWAPPASSMADR", "down_seq": "PQPQRHIMARSPMVERRLVG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327" } ], "site_lbl": "Ser514" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z327-1.549.549", "start_pos": 549, "end_pos": 549, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" }, { "database": "iPTMnet", "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ERRLVGQRSPVVERRPLGNF", "down_seq": "PPPTYAETLSTAPVASQVRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327" } ], "site_lbl": "Thr549" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q9Z327-1.569.569", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z327-1.569.569", "start_pos": 569, "end_pos": 569, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPPPTYAETLSTAPVASQVR", "down_seq": "PPSYSTLYPSSDPKPPHLKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "site_lbl": "Ser569" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9Z327-1.549.549", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z327-1.691.691", "start_pos": 691, "end_pos": 691, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DRSGPAAAEETVPEWASCLK", "down_seq": "PRIQAKPKPKPNQNLSEASG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "site_lbl": "Ser691" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z327-1.742.742", "start_pos": 742, "end_pos": 742, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRMEKYVIESSGHAELARCP", "down_seq": "PTMSLPSSWKYTTNAPGGFR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "site_lbl": "Ser742" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9Z327-1.744.744", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9Z327-1.746.746", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z327-1.746.746", "start_pos": 746, "end_pos": 746, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KYVIESSGHAELARCPSPTM", "down_seq": "LPSSWKYTTNAPGGFRVASL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "site_lbl": "Ser746" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9Z327-1.742.742", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9Z327-1.744.744", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z327-1.767.767", "start_pos": 767, "end_pos": 767, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" }, { "database": "iPTMnet", "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPSSWKYTTNAPGGFRVASL", "down_seq": "PARTPPASLYHGYLPENGVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327" } ], "site_lbl": "Ser767" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q9Z327-1.771.771", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z327-1.771.771", "start_pos": 771, "end_pos": 771, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "WKYTTNAPGGFRVASLSPAR", "down_seq": "PPASLYHGYLPENGVLRPEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "site_lbl": "Thr771" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9Z327-1.767.767", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z327-1.835.835", "start_pos": 835, "end_pos": 835, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" }, { "database": "iPTMnet", "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISSRATSSRASSRTVSPRAA", "down_seq": "PAKPSSLDLVPNLPRAGLPP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z327", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z327" } ], "site_lbl": "Ser835" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z327-1.856.856", "start_pos": 856, "end_pos": 856, "uniprot_canonical_ac": "Q9Z327-1", "length": 931, "uniprot_id": "SYNPO_RAT", "protein_name": "Synaptopodin", "refseq_ac": "NP_067727", "refseq_name": "synaptopodin", "gene_name": "Myoz3; Synpo", "gene_names_uniprotkb": "Myoz3; Synpo; Myoz3", "gene_names_refseq": "Synpo", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PAKPSSLDLVPNLPRAGLPP", "down_seq": "PALPRPSRSSPGLYNAPVQD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z327", "url": "https://www.uniprot.org/uniprotkb/Q9Z327" } ], "site_lbl": "Ser856" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "412", "end_pos": "412" }, { "start_pos": "744", "end_pos": "744" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "134", "end_pos": "134" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "514", "end_pos": "514" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "691", "end_pos": "691" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "746", "end_pos": "746" }, { "start_pos": "767", "end_pos": "767" }, { "start_pos": "771", "end_pos": "771" }, { "start_pos": "835", "end_pos": "835" }, { "start_pos": "856", "end_pos": "856" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35147-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "O35147-1", "length": 205, "uniprot_id": "BAD_RAT", "protein_name": "Bcl2-associated agonist of cell death", "refseq_ac": "NP_073189", "refseq_name": "bcl2-associated agonist of cell death isoform 4", "gene_name": "Bad", "gene_names_uniprotkb": "Bad", "gene_names_refseq": "Bad_v1; Bad_v2; Bad", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Hyperglycemia-mediated activation of the hexosamine biosynthetic pathway results in myocardial apoptosis.", "journal": "American journal of physiology. Cell physiology", "date": "2010", "authors": "Rajamani U, Essop MF", "evidence": [ { "database": "O-GlcNAc Database", "id": "O35147", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O35147" } ], "reference": [ { "type": "PubMed", "id": "20410435", "url": "https://glygen.org/publication/PubMed/20410435" } ] } ], "crossref": [ { "id": "20410435", "url": "https://glygen.org/publication/PubMed/20410435", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35147", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O35147", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "20410435", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20410435" }, { "id": "O35147", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O35147" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "137", "end_pos": "137" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35147-1.113.113", "start_pos": 113, "end_pos": 113, "uniprot_canonical_ac": "O35147-1", "length": 205, "uniprot_id": "BAD_RAT", "protein_name": "Bcl2-associated agonist of cell death", "refseq_ac": "NP_073189", "refseq_name": "bcl2-associated agonist of cell death isoform 4", "gene_name": "Bad", "gene_names_uniprotkb": "Bad", "gene_names_refseq": "Bad_v1; Bad_v2; Bad", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Interference of BAD (Bcl-xL/Bcl-2-associated death promoter)-induced apoptosis in mammalian cells by 14-3-3 isoforms and P11.", "journal": "Molecular endocrinology (Baltimore, Md.)", "date": "1997", "authors": "Hsu SY, Kaipia A, Zhu L, Hsueh AJ", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "reference": [ { "type": "PubMed", "id": "9369453", "url": "https://glygen.org/publication/PubMed/9369453" } ] }, { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" }, { "database": "iPTMnet", "id": "O35147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9369453", "url": "https://glygen.org/publication/PubMed/9369453", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AANNSHHGGAGTMETRSRHS", "down_seq": "YPAGTEEDEGMEEELSPFRG", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on heterodimerization with 14-3-3 proteins.", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" }, { "database": "PubMed", "id": "9369453", "url": "https://glygen.org/publication/PubMed/9369453" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147" } ], "site_lbl": "Ser113" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "137", "end_pos": "137" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O35147-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O35147-1.129.129", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35147-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "O35147-1", "length": 205, "uniprot_id": "BAD_RAT", "protein_name": "Bcl2-associated agonist of cell death", "refseq_ac": "NP_073189", "refseq_name": "bcl2-associated agonist of cell death isoform 4", "gene_name": "Bad", "gene_names_uniprotkb": "Bad", "gene_names_refseq": "Bad_v1; Bad_v2; Bad", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Interference of BAD (Bcl-xL/Bcl-2-associated death promoter)-induced apoptosis in mammalian cells by 14-3-3 isoforms and P11.", "journal": "Molecular endocrinology (Baltimore, Md.)", "date": "1997", "authors": "Hsu SY, Kaipia A, Zhu L, Hsueh AJ", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "reference": [ { "type": "PubMed", "id": "9369453", "url": "https://glygen.org/publication/PubMed/9369453" } ] } ], "crossref": [ { "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9369453", "url": "https://glygen.org/publication/PubMed/9369453", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTEEDEGMEEELSPFRGRSR", "down_seq": "APPNLWAAQRYGRELRRMSD", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "No heterodimerization with 14-3-3 proteins. No effect on heterodimerization with BCL2 nor with protein P11.", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" }, { "database": "PubMed", "id": "9369453", "url": "https://glygen.org/publication/PubMed/9369453" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA, PKB, PAK1, RPS6KA1, RPS6KB1 and PKC/PRKCQ", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "site_lbl": "Ser137" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "137", "end_pos": "137" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O35147-1.129.129", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O35147-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O35147-1.156.156", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35147-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "O35147-1", "length": 205, "uniprot_id": "BAD_RAT", "protein_name": "Bcl2-associated agonist of cell death", "refseq_ac": "NP_073189", "refseq_name": "bcl2-associated agonist of cell death isoform 4", "gene_name": "Bad", "gene_names_uniprotkb": "Bad", "gene_names_refseq": "Bad_v1; Bad_v2; Bad", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Ca2+-induced apoptosis through calcineurin dephosphorylation of BAD.", "journal": "Science (New York, N.Y.)", "date": "1999", "authors": "Wang HG, Pathan N, Ethell IM, Krajewski S, Yamaguchi Y, Shibasaki F, McKeon F, Bobo T, Franke TF, Reed JC", "evidence": [ { "database": "iPTMnet", "id": "O35147-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147-1" } ], "reference": [ { "type": "PubMed", "id": "10195903", "url": "https://glygen.org/publication/PubMed/10195903" } ] }, { "title": "Regulation of BAD phosphorylation at serine 112 by the Ras-mitogen-activated protein kinase pathway.", "journal": "Oncogene", "date": "1999", "authors": "Fang X, Yu S, Eder A, Mao M, Bast RC Jr, Boyd D, Mills GB", "evidence": [ { "database": "iPTMnet", "id": "O35147-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147-1" } ], "reference": [ { "type": "PubMed", "id": "10597268", "url": "https://glygen.org/publication/PubMed/10597268" } ] } ], "crossref": [ { "id": "O35147", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O35147", "database": "PRO", "categories": [ "Other" ] }, { "id": "O35147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "10195903", "url": "https://glygen.org/publication/PubMed/10195903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "10597268", "url": "https://glygen.org/publication/PubMed/10597268", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QAANNSHHGGAGTMETRSRH", "down_seq": "SYPAGTEEDEGMEEELSPFR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "PRO", "id": "O35147", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O35147" }, { "database": "iPTMnet", "id": "O35147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147" }, { "database": "PubMed", "id": "10195903", "url": "https://glygen.org/publication/PubMed/10195903" }, { "database": "PubMed", "id": "10597268", "url": "https://glygen.org/publication/PubMed/10597268" } ], "site_lbl": "Ser112" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "137", "end_pos": "137" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O35147-1.113.113", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O35147-1.129.129", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35147-1.129.129", "start_pos": 129, "end_pos": 129, "uniprot_canonical_ac": "O35147-1", "length": 205, "uniprot_id": "BAD_RAT", "protein_name": "Bcl2-associated agonist of cell death", "refseq_ac": "NP_073189", "refseq_name": "bcl2-associated agonist of cell death isoform 4", "gene_name": "Bad", "gene_names_uniprotkb": "Bad", "gene_names_refseq": "Bad_v1; Bad_v2; Bad", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRHSSYPAGTEEDEGMEEEL", "down_seq": "PFRGRSRSAPPNLWAAQRYG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "site_lbl": "Ser129" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "137", "end_pos": "137" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O35147-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O35147-1.113.113", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O35147-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O35147-1.137.137", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35147-1.135.135", "start_pos": 135, "end_pos": 135, "uniprot_canonical_ac": "O35147-1", "length": 205, "uniprot_id": "BAD_RAT", "protein_name": "Bcl2-associated agonist of cell death", "refseq_ac": "NP_073189", "refseq_name": "bcl2-associated agonist of cell death isoform 4", "gene_name": "Bad", "gene_names_uniprotkb": "Bad", "gene_names_refseq": "Bad_v1; Bad_v2; Bad", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" }, { "database": "iPTMnet", "id": "O35147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PAGTEEDEGMEEELSPFRGR", "down_seq": "RSAPPNLWAAQRYGRELRRM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147" } ], "site_lbl": "Ser135" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "137", "end_pos": "137" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O35147-1.129.129", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O35147-1.137.137", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35147-1.156.156", "start_pos": 156, "end_pos": 156, "uniprot_canonical_ac": "O35147-1", "length": 205, "uniprot_id": "BAD_RAT", "protein_name": "Bcl2-associated agonist of cell death", "refseq_ac": "NP_073189", "refseq_name": "bcl2-associated agonist of cell death isoform 4", "gene_name": "Bad", "gene_names_uniprotkb": "Bad", "gene_names_refseq": "Bad_v1; Bad_v2; Bad", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" }, { "database": "iPTMnet", "id": "O35147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSAPPNLWAAQRYGRELRRM", "down_seq": "DEFEGSFKGLPRPKSAGTAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35147" } ], "site_lbl": "Ser156" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "137", "end_pos": "137" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O35147-1.137.137", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O35147-1.171.171", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35147-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "O35147-1", "length": 205, "uniprot_id": "BAD_RAT", "protein_name": "Bcl2-associated agonist of cell death", "refseq_ac": "NP_073189", "refseq_name": "bcl2-associated agonist of cell death isoform 4", "gene_name": "Bad", "gene_names_uniprotkb": "Bad", "gene_names_refseq": "Bad_v1; Bad_v2; Bad", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELRRMSDEFEGSFKGLPRPK", "down_seq": "AGTATQMRQSASWTRIIQSW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "site_lbl": "Ser171" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "137", "end_pos": "137" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O35147-1.156.156", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35147-1.67.67", "start_pos": 67, "end_pos": 67, "uniprot_canonical_ac": "O35147-1", "length": 205, "uniprot_id": "BAD_RAT", "protein_name": "Bcl2-associated agonist of cell death", "refseq_ac": "NP_073189", "refseq_name": "bcl2-associated agonist of cell death isoform 4", "gene_name": "Bad", "gene_names_uniprotkb": "Bad", "gene_names_refseq": "Bad_v1; Bad_v2; Bad", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PEFEPSEQEDASTTDRGLGP", "down_seq": "LTEDQPGPYLAPGLLGSIVQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35147", "url": "https://www.uniprot.org/uniprotkb/O35147" } ], "site_lbl": "Ser67" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "137", "end_pos": "137" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "137", "end_pos": "137" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QY02-1.118.118", "start_pos": 118, "end_pos": 118, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEYQRSERNKRLDADRKIRL", "down_seq": "SSSSREPYKSQPEKPCLRKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "site_lbl": "Ser118" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9QY02-1.120.120", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QY02-1.120.120", "start_pos": 120, "end_pos": 120, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YQRSERNKRLDADRKIRLSS", "down_seq": "SSREPYKSQPEKPCLRKRDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "site_lbl": "Ser120" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9QY02-1.118.118", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QY02-1.146.146", "start_pos": 146, "end_pos": 146, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YKSQPEKPCLRKRDSERRAK", "down_seq": "PTPDGSERIGLEVDRRASRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "site_lbl": "Ser146" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9QY02-1.148.148", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QY02-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SQPEKPCLRKRDSERRAKSP", "down_seq": "PDGSERIGLEVDRRASRSSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "site_lbl": "Thr148" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9QY02-1.146.146", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QY02-1.311.311", "start_pos": 311, "end_pos": 311, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" }, { "database": "iPTMnet", "id": "Q9QY02", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QY02" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9QY02", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QY02", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSGTDGSDEKKKERKRARGI", "down_seq": "PIVFDRSGSSASESYAGSEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9QY02", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QY02" } ], "site_lbl": "Ser311" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q9QY02-1.318.318", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9QY02-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9QY02-1.321.321", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9QY02-1.323.323", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9QY02-1.318.318", "start_pos": 318, "end_pos": 318, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DEKKKERKRARGISPIVFDR", "down_seq": "GSSASESYAGSEKKHEKLSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "site_lbl": "Ser318" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9QY02-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9QY02-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9QY02-1.321.321", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9QY02-1.323.323", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QY02-1.320.320", "start_pos": 320, "end_pos": 320, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKKERKRARGISPIVFDRSG", "down_seq": "SASESYAGSEKKHEKLSSSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "site_lbl": "Ser320" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q9QY02-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9QY02-1.318.318", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9QY02-1.321.321", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9QY02-1.323.323", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QY02-1.321.321", "start_pos": 321, "end_pos": 321, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKERKRARGISPIVFDRSGS", "down_seq": "ASESYAGSEKKHEKLSSSVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "site_lbl": "Ser321" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9QY02-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9QY02-1.318.318", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9QY02-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9QY02-1.323.323", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QY02-1.323.323", "start_pos": 323, "end_pos": 323, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ERKRARGISPIVFDRSGSSA", "down_seq": "ESYAGSEKKHEKLSSSVRAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "site_lbl": "Ser323" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9QY02-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9QY02-1.318.318", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9QY02-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9QY02-1.321.321", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QY02-1.35.35", "start_pos": 35, "end_pos": 35, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" }, { "database": "iPTMnet", "id": "Q9QY02", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QY02" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9QY02", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QY02", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VLDDILTEVPEQDDELYNPE", "down_seq": "EQDKNEKKGSKRKSERMESI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9QY02", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QY02" } ], "site_lbl": "Ser35" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9QY02-1.427.427", "start_pos": 427, "end_pos": 427, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RESGKFQGFARLSSESHHGG", "down_seq": "PIHWVLPAGMSAKMLGGVFK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "site_lbl": "Ser427" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q9QY02-1.438.438", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QY02-1.438.438", "start_pos": 438, "end_pos": 438, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSSESHHGGSPIHWVLPAGM", "down_seq": "AKMLGGVFKIDWICRRELPF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "site_lbl": "Ser438" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9QY02-1.427.427", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QY02-1.548.548", "start_pos": 548, "end_pos": 548, "uniprot_canonical_ac": "Q9QY02-1", "length": 738, "uniprot_id": "YTDC1_RAT", "protein_name": "YTH domain-containing protein 1", "refseq_ac": "NP_001424136", "refseq_name": "YTH domain-containing protein 1 isoform 7", "gene_name": "Ythdc1", "gene_names_uniprotkb": "Ythdc1; Yt521", "gene_names_refseq": "Yt521; Ythdc1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RREPVRDVGRRRPEDYDIHN", "down_seq": "RKKPRIDYPPEFHQRPGYLK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QY02", "url": "https://www.uniprot.org/uniprotkb/Q9QY02" } ], "site_lbl": "Ser548" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "318", "end_pos": "318" }, { "start_pos": "320", "end_pos": "320" }, { "start_pos": "321", "end_pos": "321" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "548", "end_pos": "548" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9EQV6-1.210.210", "start_pos": 210, "end_pos": 210, "uniprot_canonical_ac": "Q9EQV6-1", "length": 563, "uniprot_id": "TPP1_RAT", "protein_name": "Tripeptidyl-peptidase 1", "refseq_ac": "NP_112647", "refseq_name": "tripeptidyl-peptidase 1 precursor", "gene_name": "Tpp1", "gene_names_uniprotkb": "Tpp1; Cln2", "gene_names_refseq": "Cln2; Tpp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6#ptm_processing" }, { "database": "UniProtKB", "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GVGPVGLHLGVTPSVLRQRY", "down_seq": "LTARDVGSGTTNNSQACAQF", "glycosylation": [ { "glytoucan_ac": "G09775CH", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-210", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn210", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G31852PQ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn210", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G37135JQ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-210", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn210", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn210", "evidence": [ { "id": "Q9EQV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q9EQV6-1.222.222", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 3 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 3 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 3 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 3 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9EQV6-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "Q9EQV6-1", "length": 563, "uniprot_id": "TPP1_RAT", "protein_name": "Tripeptidyl-peptidase 1", "refseq_ac": "NP_112647", "refseq_name": "tripeptidyl-peptidase 1 precursor", "gene_name": "Tpp1", "gene_names_uniprotkb": "Tpp1; Cln2", "gene_names_refseq": "Cln2; Tpp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6#ptm_processing" }, { "database": "UniProtKB", "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSVLRQRYNLTARDVGSGTT", "down_seq": "NSQACAQFLEQYFHNSDLTE", "glycosylation": [ { "glytoucan_ac": "G02815KT", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn222", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn222", "evidence": [ { "id": "Q9EQV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9EQV6-1.210.210", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9EQV6-1.286.286", "start_pos": 286, "end_pos": 286, "uniprot_canonical_ac": "Q9EQV6-1", "length": 563, "uniprot_id": "TPP1_RAT", "protein_name": "Tripeptidyl-peptidase 1", "refseq_ac": "NP_112647", "refseq_name": "tripeptidyl-peptidase 1 precursor", "gene_name": "Tpp1", "gene_names_uniprotkb": "Tpp1; Cln2", "gene_names_refseq": "Cln2; Tpp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RGRAGIEASLDVEYLMSAGA", "down_seq": "ISTWVYSSPGRHEAQEPFLQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn286", "evidence": [ { "id": "Q9EQV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9EQV6-1.313.313", "start_pos": 313, "end_pos": 313, "uniprot_canonical_ac": "Q9EQV6-1", "length": 563, "uniprot_id": "TPP1_RAT", "protein_name": "Tripeptidyl-peptidase 1", "refseq_ac": "NP_112647", "refseq_name": "tripeptidyl-peptidase 1 precursor", "gene_name": "Tpp1", "gene_names_uniprotkb": "Tpp1; Cln2", "gene_names_refseq": "Cln2; Tpp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSPGRHEAQEPFLQWLLLLS", "down_seq": "ESSLPHVHTVSYGDDEDSLS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn313", "evidence": [ { "id": "Q9EQV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9EQV6-1.443.443", "start_pos": 443, "end_pos": 443, "uniprot_canonical_ac": "Q9EQV6-1", "length": 563, "uniprot_id": "TPP1_RAT", "protein_name": "Tripeptidyl-peptidase 1", "refseq_ac": "NP_112647", "refseq_name": "tripeptidyl-peptidase 1 precursor", "gene_name": "Tpp1", "gene_names_uniprotkb": "Tpp1; Cln2", "gene_names_refseq": "Cln2; Tpp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6#ptm_processing" }, { "database": "UniProtKB", "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EEAVAQFLKSSSHLPPSSYF", "down_seq": "ASGRAYPDVAALSDGYWVVS", "glycosylation": [ { "glytoucan_ac": "G02815KT", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn443", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G20956ZV", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn443", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G28681TP", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn443", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G41247ZX", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn443", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn443", "evidence": [ { "id": "Q9EQV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 4 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 4 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 4 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 4 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9EQV6-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9EQV6-1", "length": 563, "uniprot_id": "TPP1_RAT", "protein_name": "Tripeptidyl-peptidase 1", "refseq_ac": "NP_112647", "refseq_name": "tripeptidyl-peptidase 1 precursor", "gene_name": "Tpp1", "gene_names_uniprotkb": "Tpp1; Cln2", "gene_names_refseq": "Cln2; Tpp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9EQV6", "url": "https://www.uniprot.org/uniprotkb/Q9EQV6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9EQV6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9EQV6" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9EQV6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9EQV6", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "Q9EQV6", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9EQV6" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "443", "end_pos": "443" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "A2VCX1-1.265.265", "start_pos": 265, "end_pos": 265, "uniprot_canonical_ac": "A2VCX1-1", "length": 271, "uniprot_id": "TIPRL_RAT", "protein_name": "TIP41-like protein", "refseq_ac": "NP_001103137", "refseq_name": "TIP41-like protein", "gene_name": "Tiprl", "gene_names_uniprotkb": "Tiprl", "gene_names_refseq": "RGD1310442; Tiprl", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A2VCX1", "url": "https://www.uniprot.org/uniprotkb/A2VCX1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A2VCX1", "url": "https://www.uniprot.org/uniprotkb/A2VCX1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEAVCEKLVFPERIDPNPVD", "down_seq": "ESAPSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "A2VCX1", "url": "https://www.uniprot.org/uniprotkb/A2VCX1" } ], "site_lbl": "Ser265" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "265", "end_pos": "265" }, { "start_pos": "270", "end_pos": "270" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "A2VCX1-1.270.270", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "A2VCX1-1.270.270", "start_pos": 270, "end_pos": 270, "uniprot_canonical_ac": "A2VCX1-1", "length": 271, "uniprot_id": "TIPRL_RAT", "protein_name": "TIP41-like protein", "refseq_ac": "NP_001103137", "refseq_name": "TIP41-like protein", "gene_name": "Tiprl", "gene_names_uniprotkb": "Tiprl", "gene_names_refseq": "RGD1310442; Tiprl", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A2VCX1", "url": "https://www.uniprot.org/uniprotkb/A2VCX1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "A2VCX1", "url": "https://www.uniprot.org/uniprotkb/A2VCX1" }, { "database": "iPTMnet", "id": "A2VCX1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A2VCX1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "A2VCX1", "url": "https://www.uniprot.org/uniprotkb/A2VCX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "A2VCX1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A2VCX1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKLVFPERIDPNPVDSESAP", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "A2VCX1", "url": "https://www.uniprot.org/uniprotkb/A2VCX1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "A2VCX1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/A2VCX1" } ], "site_lbl": "Ser270" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "265", "end_pos": "265" }, { "start_pos": "270", "end_pos": "270" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "A2VCX1-1.265.265", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70441-1.85.85", "start_pos": 85, "end_pos": 85, "uniprot_canonical_ac": "O70441-1", "length": 579, "uniprot_id": "SYN3_RAT", "protein_name": "Synapsin-3", "refseq_ac": "NP_058805", "refseq_name": "synapsin-3", "gene_name": "Syn3", "gene_names_uniprotkb": "Syn3", "gene_names_refseq": "Syn3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SAMKQTPQAPTGLMEPPTPV", "down_seq": "PVVQRPRILLVIDDAHTDWS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr85", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "85", "end_pos": "85" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "454", "end_pos": "454" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70441-1.454.454", "start_pos": 454, "end_pos": 454, "uniprot_canonical_ac": "O70441-1", "length": 579, "uniprot_id": "SYN3_RAT", "protein_name": "Synapsin-3", "refseq_ac": "NP_058805", "refseq_name": "synapsin-3", "gene_name": "Syn3", "gene_names_uniprotkb": "Syn3", "gene_names_refseq": "Syn3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RPPPQGGPRQAQSPQPPRSR", "down_seq": "PSQQRLSPQGQQPVSPQSGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" } ], "site_lbl": "Ser454" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "85", "end_pos": "85" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "454", "end_pos": "454" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O70441-1.461.461", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O70441-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O70441-1.474.474", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O70441-1.461.461", "start_pos": 461, "end_pos": 461, "uniprot_canonical_ac": "O70441-1", "length": 579, "uniprot_id": "SYN3_RAT", "protein_name": "Synapsin-3", "refseq_ac": "NP_058805", "refseq_name": "synapsin-3", "gene_name": "Syn3", "gene_names_uniprotkb": "Syn3", "gene_names_refseq": "Syn3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" }, { "database": "iPTMnet", "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PRQAQSPQPPRSRSPSQQRL", "down_seq": "PQGQQPVSPQSGSPQQQRSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441" } ], "site_lbl": "Ser461" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "85", "end_pos": "85" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "454", "end_pos": "454" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O70441-1.454.454", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O70441-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O70441-1.474.474", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O70441-1.480.480", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70441-1.469.469", "start_pos": 469, "end_pos": 469, "uniprot_canonical_ac": "O70441-1", "length": 579, "uniprot_id": "SYN3_RAT", "protein_name": "Synapsin-3", "refseq_ac": "NP_058805", "refseq_name": "synapsin-3", "gene_name": "Syn3", "gene_names_uniprotkb": "Syn3", "gene_names_refseq": "Syn3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" }, { "database": "iPTMnet", "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPRSRSPSQQRLSPQGQQPV", "down_seq": "PQSGSPQQQRSPGSPQLSRA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441" } ], "site_lbl": "Ser469" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "85", "end_pos": "85" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "454", "end_pos": "454" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O70441-1.454.454", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O70441-1.461.461", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O70441-1.474.474", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O70441-1.480.480", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O70441-1.483.483", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70441-1.474.474", "start_pos": 474, "end_pos": 474, "uniprot_canonical_ac": "O70441-1", "length": 579, "uniprot_id": "SYN3_RAT", "protein_name": "Synapsin-3", "refseq_ac": "NP_058805", "refseq_name": "synapsin-3", "gene_name": "Syn3", "gene_names_uniprotkb": "Syn3", "gene_names_refseq": "Syn3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" }, { "database": "iPTMnet", "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPSQQRLSPQGQQPVSPQSG", "down_seq": "PQQQRSPGSPQLSRASGGSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441" } ], "site_lbl": "Ser474" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "85", "end_pos": "85" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "454", "end_pos": "454" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O70441-1.454.454", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O70441-1.461.461", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O70441-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O70441-1.480.480", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O70441-1.483.483", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70441-1.480.480", "start_pos": 480, "end_pos": 480, "uniprot_canonical_ac": "O70441-1", "length": 579, "uniprot_id": "SYN3_RAT", "protein_name": "Synapsin-3", "refseq_ac": "NP_058805", "refseq_name": "synapsin-3", "gene_name": "Syn3", "gene_names_uniprotkb": "Syn3", "gene_names_refseq": "Syn3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" }, { "database": "iPTMnet", "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSPQGQQPVSPQSGSPQQQR", "down_seq": "PGSPQLSRASGGSSPNQASK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441" } ], "site_lbl": "Ser480" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "85", "end_pos": "85" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "454", "end_pos": "454" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O70441-1.461.461", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O70441-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O70441-1.474.474", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O70441-1.483.483", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70441-1.483.483", "start_pos": 483, "end_pos": 483, "uniprot_canonical_ac": "O70441-1", "length": 579, "uniprot_id": "SYN3_RAT", "protein_name": "Synapsin-3", "refseq_ac": "NP_058805", "refseq_name": "synapsin-3", "gene_name": "Syn3", "gene_names_uniprotkb": "Syn3", "gene_names_refseq": "Syn3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" }, { "database": "iPTMnet", "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QGQQPVSPQSGSPQQQRSPG", "down_seq": "PQLSRASGGSSPNQASKPTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441" } ], "site_lbl": "Ser483" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "85", "end_pos": "85" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "454", "end_pos": "454" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O70441-1.469.469", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O70441-1.474.474", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O70441-1.480.480", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70441-1.540.540", "start_pos": 540, "end_pos": 540, "uniprot_canonical_ac": "O70441-1", "length": 579, "uniprot_id": "SYN3_RAT", "protein_name": "Synapsin-3", "refseq_ac": "NP_058805", "refseq_name": "synapsin-3", "gene_name": "Syn3", "gene_names_uniprotkb": "Syn3", "gene_names_refseq": "Syn3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" }, { "database": "iPTMnet", "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQGEEPQKTASPHPHLNKSQ", "down_seq": "LTNSLSTSDTSHRGTPSEDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O70441", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O70441" } ], "site_lbl": "Ser540" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "85", "end_pos": "85" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "454", "end_pos": "454" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O70441-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "O70441-1", "length": 579, "uniprot_id": "SYN3_RAT", "protein_name": "Synapsin-3", "refseq_ac": "NP_058805", "refseq_name": "synapsin-3", "gene_name": "Syn3", "gene_names_uniprotkb": "Syn3", "gene_names_refseq": "Syn3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MNFLRRRL", "down_seq": "DSSFVANLPNGYMPDLQRPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA and CaMK1", "evidence": [ { "database": "UniProtKB", "id": "O70441", "url": "https://www.uniprot.org/uniprotkb/O70441" } ], "site_lbl": "Ser9" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "85", "end_pos": "85" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "454", "end_pos": "454" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TPK1-1.161.161", "start_pos": 161, "end_pos": 161, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DNIFGAWFEAQVVQVQKKAL", "down_seq": "EEEPCSSSAIMAPEDDIMYH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "site_lbl": "Ser161" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TPK1-1.284.284", "start_pos": 284, "end_pos": 284, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" }, { "database": "iPTMnet", "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NNCRIIFVDEVLKIELPNER", "down_seq": "PLIGSPSRRKSGPSCQYCKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1" } ], "site_lbl": "Ser284" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q7TPK1-1.295.295", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7TPK1-1.295.295", "start_pos": 295, "end_pos": 295, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKIELPNERSPLIGSPSRRK", "down_seq": "GPSCQYCKDDENKPCRKCAC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "site_lbl": "Ser295" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q7TPK1-1.284.284", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TPK1-1.365.365", "start_pos": 365, "end_pos": 365, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLTCVPPEPEWYCPSCRTDS", "down_seq": "EVVQAGEKLKKSKKKAKMAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "site_lbl": "Ser365" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TPK1-1.511.511", "start_pos": 511, "end_pos": 511, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GQSSDQKLTNNNRALALNCH", "down_seq": "PINEKGAEAEDWRQGKPVRV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "site_lbl": "Ser511" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TPK1-1.631.631", "start_pos": 631, "end_pos": 631, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LANKEKNRKRPAKALEQGPS", "down_seq": "SKIGKSKRKSTGPATTSPRV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CDK1", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "site_lbl": "Ser631" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q7TPK1-1.641.641", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q7TPK1-1.648.648", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TPK1-1.641.641", "start_pos": 641, "end_pos": 641, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PAKALEQGPSSSKIGKSKRK", "down_seq": "TGPATTSPRVSKKSKLEPYT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "site_lbl": "Ser641" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q7TPK1-1.631.631", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q7TPK1-1.648.648", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TPK1-1.648.648", "start_pos": 648, "end_pos": 648, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GPSSSKIGKSKRKSTGPATT", "down_seq": "PRVSKKSKLEPYTLPLQQAN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "site_lbl": "Ser648" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q7TPK1-1.631.631", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q7TPK1-1.641.641", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TPK1-1.751.751", "start_pos": 751, "end_pos": 751, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" }, { "database": "iPTMnet", "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSFRAQVFSCPACRYDLDHS", "down_seq": "PTRVNQPLQTILNQLFPGYG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1" } ], "site_lbl": "Ser751" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7TPK1-1.76.76", "start_pos": 76, "end_pos": 76, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HTLFDYDVRLNDTIQLLVRQ", "down_seq": "LALPLSTKERDSELSDSDSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "site_lbl": "Ser76" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q7TPK1-1.91.91", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q7TPK1-1.93.93", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q7TPK1-1.95.95", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TPK1-1.91.91", "start_pos": 91, "end_pos": 91, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" }, { "database": "iPTMnet", "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLVRQSLALPLSTKERDSEL", "down_seq": "DSDSGYGVGHSESDKSSTHG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1" } ], "site_lbl": "Ser91" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q7TPK1-1.76.76", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q7TPK1-1.93.93", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q7TPK1-1.95.95", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7TPK1-1.93.93", "start_pos": 93, "end_pos": 93, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" }, { "database": "iPTMnet", "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VRQSLALPLSTKERDSELSD", "down_seq": "DSGYGVGHSESDKSSTHGEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1" } ], "site_lbl": "Ser93" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q7TPK1-1.76.76", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q7TPK1-1.91.91", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q7TPK1-1.95.95", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7TPK1-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "Q7TPK1-1", "length": 774, "uniprot_id": "UHRF1_RAT", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "refseq_ac": "NP_001380775", "refseq_name": "E3 ubiquitin-protein ligase UHRF1 isoform 2", "gene_name": "Uhrf1", "gene_names_uniprotkb": "Uhrf1; Ac2-121", "gene_names_refseq": "Ac2-121; Np95; Uhrf1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" }, { "database": "iPTMnet", "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QSLALPLSTKERDSELSDSD", "down_seq": "GYGVGHSESDKSSTHGEGTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TPK1", "url": "https://www.uniprot.org/uniprotkb/Q7TPK1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q7TPK1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TPK1" } ], "site_lbl": "Ser95" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "641", "end_pos": "641" }, { "start_pos": "648", "end_pos": "648" }, { "start_pos": "751", "end_pos": "751" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q7TPK1-1.76.76", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q7TPK1-1.91.91", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q7TPK1-1.93.93", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15389-1.1041.1041", "start_pos": 1041, "end_pos": 1041, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KVPPARKETRFEEDKRPGQG", "down_seq": "PGDSEPVCVPIAVAESDTED", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1041", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.1367.1367", "start_pos": 1367, "end_pos": 1367, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WLIFSIMGVNLFAGKFGRCI", "down_seq": "QTEGDLPLNYTIVNNKSECE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1367", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "P15389-1.1376.1376", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P15389-1.1382.1382", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.1376.1376", "start_pos": 1376, "end_pos": 1376, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NLFAGKFGRCINQTEGDLPL", "down_seq": "YTIVNNKSECESFNVTGELY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1376", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P15389-1.1367.1367", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P15389-1.1382.1382", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P15389-1.1390.1390", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.1382.1382", "start_pos": 1382, "end_pos": 1382, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FGRCINQTEGDLPLNYTIVN", "down_seq": "KSECESFNVTGELYWTKVKV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1382", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P15389-1.1367.1367", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P15389-1.1376.1376", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P15389-1.1390.1390", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.1390.1390", "start_pos": 1390, "end_pos": 1390, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EGDLPLNYTIVNNKSECESF", "down_seq": "VTGELYWTKVKVNFDNVGAG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1390", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P15389-1.1376.1376", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P15389-1.1382.1382", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.215.215", "start_pos": 215, "end_pos": 215, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NWLDFSVIVMAYTTEFVDLG", "down_seq": "VSALRTFRVLRALKTISVIS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn215", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.284.284", "start_pos": 284, "end_pos": 284, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "6UZ3", "url": "https://www.rcsb.org/structure/6UZ3", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8F6P", "url": "https://www.rcsb.org/structure/8F6P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8T6L", "url": "https://www.rcsb.org/structure/8T6L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6UZ3|A|284", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8F6P|A|284", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8T6L|A|284", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VFALIGLQLFMGNLRHKCVR", "down_seq": "FTELNGTNGSVEADGLVWNS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6UZ3&bu=0&command=select+.A:284;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn284", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" }, { "id": "6UZ3", "database": "PDB", "url": "https://www.rcsb.org/structure/6UZ3" }, { "id": "8F6P", "database": "PDB", "url": "https://www.rcsb.org/structure/8F6P" }, { "id": "8T6L", "database": "PDB", "url": "https://www.rcsb.org/structure/8T6L" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P15389-1.289.289", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P15389-1.292.292", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.289.289", "start_pos": 289, "end_pos": 289, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GLQLFMGNLRHKCVRNFTEL", "down_seq": "GTNGSVEADGLVWNSLDVYL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn289", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P15389-1.284.284", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P15389-1.292.292", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.292.292", "start_pos": 292, "end_pos": 292, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LFMGNLRHKCVRNFTELNGT", "down_seq": "GSVEADGLVWNSLDVYLNDP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn292", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P15389-1.284.284", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P15389-1.289.289", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.319.319", "start_pos": 319, "end_pos": 319, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Structure of the Cardiac Sodium Channel.", "journal": "Cell", "date": "2020-01-09", "authors": "Jiang Daohua, Shi Hui, Tonggu Lige, Gamal El-Din Tamer M, Lenaeus Michael J, Zhao Yan, Yoshioka Craig, Zheng Ning, Catterall William A", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" }, { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "reference": [ { "type": "PubMed", "id": "31866066", "url": "https://glygen.org/publication/PubMed/31866066" } ] } ], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "6UZ3", "url": "https://www.rcsb.org/structure/6UZ3", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "31866066", "url": "https://glygen.org/publication/PubMed/31866066", "database": "PubMed", "categories": [ "Other" ] }, { "id": "6UZ0", "url": "https://www.rcsb.org/structure/6UZ0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8T6L", "url": "https://www.rcsb.org/structure/8T6L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6UZ0|A|319", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "6UZ3|A|319", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8T6L|A|319", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GLVWNSLDVYLNDPANYLLK", "down_seq": "GTTDVLLCGNSSDAGTCPEG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6UZ0&bu=0&command=select+.A:319;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn319", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" }, { "id": "6UZ3", "database": "PDB", "url": "https://www.rcsb.org/sequence/6UZ3" }, { "id": "31866066", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/31866066" }, { "id": "6UZ0", "database": "PDB", "url": "https://www.rcsb.org/sequence/6UZ0" }, { "id": "8T6L", "database": "PDB", "url": "https://www.rcsb.org/structure/8T6L" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "P15389-1.329.329", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15389-1.329.329", "start_pos": 329, "end_pos": 329, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8T6L", "url": "https://www.rcsb.org/structure/8T6L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8T6L|A|329", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LNDPANYLLKNGTTDVLLCG", "down_seq": "SSDAGTCPEGYRCLKAGENP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8T6L&bu=0&command=select+.A:329;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn329", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" }, { "id": "8T6L", "database": "PDB", "url": "https://www.rcsb.org/structure/8T6L" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P15389-1.319.319", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.741.741", "start_pos": 741, "end_pos": 741, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DLTITMCIVLNTLFMALEHY", "down_seq": "MTAEFEEMLQVGNLVFTGIF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn741", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.804.804", "start_pos": 804, "end_pos": 804, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IFDSIIVILSLMELGLSRMG", "down_seq": "LSVLRSFRLLRVFKLAKSWP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn804", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.865.865", "start_pos": 865, "end_pos": 865, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LVLAIIVFIFAVVGMQLFGK", "down_seq": "YSELRHRISDSGLLPRWHMM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn865", "evidence": [ { "id": "P15389", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15389#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P15389-1.869.869", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "O-GlcNAcylation of cardiac Nav1.5 contributes to the development of arrhythmias in diabetic hearts.", "journal": "International journal of cardiology", "date": "2018", "authors": "Yu P, Hu L, Xie J, Chen S, Huang L, Xu Z, Liu X, Zhou Q, Yuan P, Yan X, Jin J, Shen Y, Zhu W, Fu L, Chen Q, Yu J, Hu J, Cao Q, Wan R, Hong K", "evidence": [ { "database": "O-GlcNAc Database", "id": "P15389", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15389" } ], "reference": [ { "type": "PubMed", "id": "29530619", "url": "https://glygen.org/publication/PubMed/29530619" } ] } ], "crossref": [ { "id": "29530619", "url": "https://glygen.org/publication/PubMed/29530619", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15389", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15389", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "29530619", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29530619" }, { "id": "P15389", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P15389" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15389-1.1612.1612", "start_pos": 1612, "end_pos": 1612, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "A specific interaction between the cardiac sodium channel and site-3 toxin anthopleurin B.", "journal": "The Journal of biological chemistry", "date": "1998", "authors": "Benzinger GR, Kyle JW, Blumenthal KM, Hanck DA", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "reference": [ { "type": "PubMed", "id": "9417050", "url": "https://glygen.org/publication/PubMed/9417050" } ] } ], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9417050", "url": "https://glygen.org/publication/PubMed/9417050", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "SWNIFDFVVVILSIVGTVLS", "down_seq": "IIQKYFFSPTLFRVIRLARI", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "Little change in voltage-dependence of conductance and decrease in affinity to the sea anemone toxin anthopleurin-B (residue Lys-37).", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" }, { "database": "PubMed", "id": "9417050", "url": "https://glygen.org/publication/PubMed/9417050" } ] }, { "sequence_org": "D", "sequence_mut": "R", "comment": "Little change in voltage-dependence of conductance and decrease in affinity to the sea anemone toxin anthopleurin-B (residue Lys-37).", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" }, { "database": "PubMed", "id": "9417050", "url": "https://glygen.org/publication/PubMed/9417050" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15389-1.869.869", "start_pos": 869, "end_pos": 869, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "A disulfide tether stabilizes the block of sodium channels by the conotoxin muO section sign-GVIIJ.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2014", "authors": "Gajewiak J, Azam L, Imperial J, Walewska A, Green BR, Bandyopadhyay PK, Raghuraman S, Ueberheide B, Bern M, Zhou HM, Minassian NA, Hagan RH, Flinspach M, Liu Y, Bulaj G, Wickenden AD, Olivera BM, Yoshikami D, Zhang MM", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "reference": [ { "type": "PubMed", "id": "24497506", "url": "https://glygen.org/publication/PubMed/24497506" } ] } ], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24497506", "url": "https://glygen.org/publication/PubMed/24497506", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "IIVFIFAVVGMQLFGKNYSE", "down_seq": "RHRISDSGLLPRWHMMDFFH", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "C", "comment": ">1000-fold increase of sensitivity to the conotoxin GVIIJ(SSG).", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" }, { "database": "PubMed", "id": "24497506", "url": "https://glygen.org/publication/PubMed/24497506" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P15389-1.865.865", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15389-1.1505.1505", "start_pos": 1505, "end_pos": 1505, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QDIFMTEEQKKYYNAMKKLG", "down_seq": "KKPQKPIPRPLNKYQGFIFD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "site_lbl": "Ser1505" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRESLAAIEKRMAEKQARGG", "down_seq": "ATSQESREGLQEEEAPRPQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "site_lbl": "Ser37" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P15389-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.39.39", "start_pos": 39, "end_pos": 39, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ESLAAIEKRMAEKQARGGSA", "down_seq": "SQESREGLQEEEAPRPQLDL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "site_lbl": "Thr39" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P15389-1.37.37", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.458.458", "start_pos": 458, "end_pos": 458, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AMEMLKKEHEALTIRGVDTV", "down_seq": "RSSLEMSPLAPVTNHERKSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "site_lbl": "Ser458" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P15389-1.461.461", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.461.461", "start_pos": 461, "end_pos": 461, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MLKKEHEALTIRGVDTVSRS", "down_seq": "LEMSPLAPVTNHERKSKRRK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "site_lbl": "Ser461" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P15389-1.458.458", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.484.484", "start_pos": 484, "end_pos": 484, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" }, { "database": "iPTMnet", "id": "P15389", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15389" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15389", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15389", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSPLAPVTNHERKSKRRKRL", "down_seq": "SGTEDGGDDRLPKSDSEDGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P15389", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15389" } ], "site_lbl": "Ser484" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P15389-1.485.485", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P15389-1.487.487", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P15389-1.498.498", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15389-1.485.485", "start_pos": 485, "end_pos": 485, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" }, { "database": "iPTMnet", "id": "P15389", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15389" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15389", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15389", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPLAPVTNHERKSKRRKRLS", "down_seq": "GTEDGGDDRLPKSDSEDGPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P15389", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15389" } ], "site_lbl": "Ser485" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P15389-1.484.484", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P15389-1.487.487", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P15389-1.498.498", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15389-1.487.487", "start_pos": 487, "end_pos": 487, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" }, { "database": "iPTMnet", "id": "P15389", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15389" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P15389", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15389", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LAPVTNHERKSKRRKRLSSG", "down_seq": "EDGGDDRLPKSDSEDGPRAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P15389", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15389" } ], "site_lbl": "Thr487" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P15389-1.484.484", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P15389-1.485.485", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P15389-1.498.498", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15389-1.498.498", "start_pos": 498, "end_pos": 498, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRRKRLSSGTEDGGDDRLPK", "down_seq": "DSEDGPRALNQLSLTHGLSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "site_lbl": "Ser498" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P15389-1.484.484", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P15389-1.485.485", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P15389-1.487.487", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P15389-1.511.511", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.511.511", "start_pos": 511, "end_pos": 511, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GDDRLPKSDSEDGPRALNQL", "down_seq": "LTHGLSRTSMRPRSSRGSIF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "site_lbl": "Ser511" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P15389-1.498.498", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.540.540", "start_pos": 540, "end_pos": 540, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SMRPRSSRGSIFTFRRRDQG", "down_seq": "EADFADDENSTAGESESHRT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "site_lbl": "Ser540" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.572.572", "start_pos": 572, "end_pos": 572, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGESESHRTSLLVPWPLRHP", "down_seq": "AQGQPGPGASAPGYVLNGKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "site_lbl": "Ser572" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.665.665", "start_pos": 665, "end_pos": 665, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPQAPCADGFEEPGARQRAL", "down_seq": "AVSVLTSALEELEESHRKCP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "site_lbl": "Ser665" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P15389-1.668.668", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15389-1.668.668", "start_pos": 668, "end_pos": 668, "uniprot_canonical_ac": "P15389-1", "length": 2019, "uniprot_id": "SCN5A_RAT", "protein_name": "Sodium channel protein type 5 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn5a", "gene_names_uniprotkb": "Scn5a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APCADGFEEPGARQRALSAV", "down_seq": "VLTSALEELEESHRKCPPCW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P15389", "url": "https://www.uniprot.org/uniprotkb/P15389" } ], "site_lbl": "Ser668" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1041", "end_pos": "1041" }, { "start_pos": "1367", "end_pos": "1367" }, { "start_pos": "1376", "end_pos": "1376" }, { "start_pos": "1382", "end_pos": "1382" }, { "start_pos": "1390", "end_pos": "1390" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "741", "end_pos": "741" }, { "start_pos": "804", "end_pos": "804" }, { "start_pos": "865", "end_pos": "865" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1612", "end_pos": "1612" }, { "start_pos": "869", "end_pos": "869" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "540", "end_pos": "540" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "668", "end_pos": "668" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P15389-1.665.665", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9EQE1-1.547.547", "start_pos": 547, "end_pos": 547, "uniprot_canonical_ac": "Q9EQE1-1", "length": 588, "uniprot_id": "SENP2_RAT", "protein_name": "Sentrin-specific protease 2", "refseq_ac": "NP_076479", "refseq_name": "sentrin-specific protease 2", "gene_name": "Senp2", "gene_names_uniprotkb": "Senp2", "gene_names_refseq": "Axam; Senp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Desumoylation activity of Axam, a novel Axin-binding protein, is involved in downregulation of beta-catenin.", "journal": "Molecular and cellular biology", "date": "2002", "authors": "Kadoya T, Yamamoto H, Suzuki T, Yukita A, Fukui A, Michiue T, Asahara T, Tanaka K, Asashima M, Kikuchi A", "evidence": [ { "database": "UniProtKB", "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1" } ], "reference": [ { "type": "PubMed", "id": "11997515", "url": "https://glygen.org/publication/PubMed/11997515" } ] } ], "crossref": [ { "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11997515", "url": "https://glygen.org/publication/PubMed/11997515", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "EWTHYSMKPHEIPQQLNGSD", "down_seq": "GMFTCKYADYISRDKPITFT", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Abolishes protease activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1" }, { "database": "PubMed", "id": "11997515", "url": "https://glygen.org/publication/PubMed/11997515" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "32", "end_pos": "32" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9EQE1-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "Q9EQE1-1", "length": 588, "uniprot_id": "SENP2_RAT", "protein_name": "Sentrin-specific protease 2", "refseq_ac": "NP_076479", "refseq_name": "sentrin-specific protease 2", "gene_name": "Senp2", "gene_names_uniprotkb": "Senp2", "gene_names_refseq": "Axam; Senp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ILRLCERPAPGARALLKRRR", "down_seq": "SSSLFSTAVDTDEIPAKRPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1" } ], "site_lbl": "Ser32" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "32", "end_pos": "32" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9EQE1-1.332.332", "start_pos": 332, "end_pos": 332, "uniprot_canonical_ac": "Q9EQE1-1", "length": 588, "uniprot_id": "SENP2_RAT", "protein_name": "Sentrin-specific protease 2", "refseq_ac": "NP_076479", "refseq_name": "sentrin-specific protease 2", "gene_name": "Senp2", "gene_names_uniprotkb": "Senp2", "gene_names_refseq": "Axam; Senp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGHQLEPDLSEEVSARLRLG", "down_seq": "GSNGLLRRKISVLEAKEKNF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1" } ], "site_lbl": "Ser332" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "32", "end_pos": "32" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q9EQE1-1.343.343", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9EQE1-1.343.343", "start_pos": 343, "end_pos": 343, "uniprot_canonical_ac": "Q9EQE1-1", "length": 588, "uniprot_id": "SENP2_RAT", "protein_name": "Sentrin-specific protease 2", "refseq_ac": "NP_076479", "refseq_name": "sentrin-specific protease 2", "gene_name": "Senp2", "gene_names_uniprotkb": "Senp2", "gene_names_refseq": "Axam; Senp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVSARLRLGSGSNGLLRRKI", "down_seq": "VLEAKEKNFPSKEKDRRTED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9EQE1", "url": "https://www.uniprot.org/uniprotkb/Q9EQE1" } ], "site_lbl": "Ser343" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "547", "end_pos": "547" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "32", "end_pos": "32" }, { "start_pos": "332", "end_pos": "332" }, { "start_pos": "343", "end_pos": "343" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9EQE1-1.332.332", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P28573-1.182.182", "start_pos": 182, "end_pos": 182, "uniprot_canonical_ac": "P28573-1", "length": 637, "uniprot_id": "SC6A7_RAT", "protein_name": "Sodium-dependent proline transporter", "refseq_ac": "NP_446448", "refseq_name": "sodium-dependent proline transporter", "gene_name": "Slc6a7", "gene_names_uniprotkb": "Slc6a7; Prot", "gene_names_refseq": "Prot; Slc6a7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NTERCLEHRGPKDGNGALPL", "down_seq": "LSSTVSPSEEYWSRYVLHIQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn182", "evidence": [ { "id": "P28573", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P28573#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "582", "end_pos": "582" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P28573-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "P28573-1", "length": 637, "uniprot_id": "SC6A7_RAT", "protein_name": "Sodium-dependent proline transporter", "refseq_ac": "NP_446448", "refseq_name": "sodium-dependent proline transporter", "gene_name": "Slc6a7", "gene_names_uniprotkb": "Slc6a7; Prot", "gene_names_refseq": "Prot; Slc6a7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" }, { "database": "iPTMnet", "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "", "down_seq": "PSDQGDVDLDVDFAADRGNW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573" } ], "site_lbl": "Thr20" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "582", "end_pos": "582" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P28573-1.22.22", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P28573-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "P28573-1", "length": 637, "uniprot_id": "SC6A7_RAT", "protein_name": "Sodium-dependent proline transporter", "refseq_ac": "NP_446448", "refseq_name": "sodium-dependent proline transporter", "gene_name": "Slc6a7", "gene_names_uniprotkb": "Slc6a7; Prot", "gene_names_refseq": "Prot; Slc6a7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" }, { "database": "iPTMnet", "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKLQEAHLRKPVTPDLLMTP", "down_seq": "DQGDVDLDVDFAADRGNWTG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573" } ], "site_lbl": "Ser22" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "582", "end_pos": "582" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P28573-1.20.20", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P28573-1.573.573", "start_pos": 573, "end_pos": 573, "uniprot_canonical_ac": "P28573-1", "length": 637, "uniprot_id": "SC6A7_RAT", "protein_name": "Sodium-dependent proline transporter", "refseq_ac": "NP_446448", "refseq_name": "sodium-dependent proline transporter", "gene_name": "Slc6a7", "gene_names_uniprotkb": "Slc6a7; Prot", "gene_names_refseq": "Prot; Slc6a7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" }, { "database": "iPTMnet", "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GMLVAVLREEGSLWERLQQA", "down_seq": "RPAIDWGPSLEENRTGMYVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573" } ], "site_lbl": "Ser573" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "582", "end_pos": "582" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "P28573-1.582.582", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P28573-1.588.588", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P28573-1.591.591", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P28573-1.582.582", "start_pos": 582, "end_pos": 582, "uniprot_canonical_ac": "P28573-1", "length": 637, "uniprot_id": "SC6A7_RAT", "protein_name": "Sodium-dependent proline transporter", "refseq_ac": "NP_446448", "refseq_name": "sodium-dependent proline transporter", "gene_name": "Slc6a7", "gene_names_uniprotkb": "Slc6a7; Prot", "gene_names_refseq": "Prot; Slc6a7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" }, { "database": "iPTMnet", "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EGSLWERLQQASRPAIDWGP", "down_seq": "LEENRTGMYVATLAGSQSPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573" } ], "site_lbl": "Ser582" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "582", "end_pos": "582" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P28573-1.573.573", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P28573-1.588.588", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P28573-1.591.591", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P28573-1.598.598", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P28573-1.600.600", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P28573-1.588.588", "start_pos": 588, "end_pos": 588, "uniprot_canonical_ac": "P28573-1", "length": 637, "uniprot_id": "SC6A7_RAT", "protein_name": "Sodium-dependent proline transporter", "refseq_ac": "NP_446448", "refseq_name": "sodium-dependent proline transporter", "gene_name": "Slc6a7", "gene_names_uniprotkb": "Slc6a7; Prot", "gene_names_refseq": "Prot; Slc6a7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" }, { "database": "iPTMnet", "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RLQQASRPAIDWGPSLEENR", "down_seq": "GMYVATLAGSQSPKPLMVHM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573" } ], "site_lbl": "Thr588" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "582", "end_pos": "582" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P28573-1.573.573", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P28573-1.582.582", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P28573-1.591.591", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P28573-1.598.598", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P28573-1.600.600", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P28573-1.591.591", "start_pos": 591, "end_pos": 591, "uniprot_canonical_ac": "P28573-1", "length": 637, "uniprot_id": "SC6A7_RAT", "protein_name": "Sodium-dependent proline transporter", "refseq_ac": "NP_446448", "refseq_name": "sodium-dependent proline transporter", "gene_name": "Slc6a7", "gene_names_uniprotkb": "Slc6a7; Prot", "gene_names_refseq": "Prot; Slc6a7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" }, { "database": "iPTMnet", "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] } ], "crossref": [ { "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "QASRPAIDWGPSLEENRTGM", "down_seq": "VATLAGSQSPKPLMVHMRKY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "P28573", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P28573" } ], "site_lbl": "Tyr591" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "582", "end_pos": "582" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P28573-1.573.573", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P28573-1.582.582", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P28573-1.588.588", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P28573-1.598.598", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P28573-1.600.600", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P28573-1.598.598", "start_pos": 598, "end_pos": 598, "uniprot_canonical_ac": "P28573-1", "length": 637, "uniprot_id": "SC6A7_RAT", "protein_name": "Sodium-dependent proline transporter", "refseq_ac": "NP_446448", "refseq_name": "sodium-dependent proline transporter", "gene_name": "Slc6a7", "gene_names_uniprotkb": "Slc6a7; Prot", "gene_names_refseq": "Prot; Slc6a7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DWGPSLEENRTGMYVATLAG", "down_seq": "QSPKPLMVHMRKYGGITSFE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" } ], "site_lbl": "Ser598" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "582", "end_pos": "582" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P28573-1.582.582", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P28573-1.588.588", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P28573-1.591.591", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P28573-1.600.600", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P28573-1.600.600", "start_pos": 600, "end_pos": 600, "uniprot_canonical_ac": "P28573-1", "length": 637, "uniprot_id": "SC6A7_RAT", "protein_name": "Sodium-dependent proline transporter", "refseq_ac": "NP_446448", "refseq_name": "sodium-dependent proline transporter", "gene_name": "Slc6a7", "gene_names_uniprotkb": "Slc6a7; Prot", "gene_names_refseq": "Prot; Slc6a7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GPSLEENRTGMYVATLAGSQ", "down_seq": "PKPLMVHMRKYGGITSFENT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P28573", "url": "https://www.uniprot.org/uniprotkb/P28573" } ], "site_lbl": "Ser600" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "182", "end_pos": "182" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "582", "end_pos": "582" }, { "start_pos": "588", "end_pos": "588" }, { "start_pos": "591", "end_pos": "591" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "600", "end_pos": "600" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P28573-1.582.582", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P28573-1.588.588", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P28573-1.591.591", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P28573-1.598.598", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88420-1.109.109", "start_pos": 109, "end_pos": 109, "uniprot_canonical_ac": "O88420-1", "length": 1978, "uniprot_id": "SCN8A_RAT", "protein_name": "Sodium channel protein type 8 subunit alpha", "refseq_ac": "NP_062139", "refseq_name": "sodium channel protein type 8 subunit alpha", "gene_name": "Scn8a", "gene_names_uniprotkb": "Scn8a", "gene_names_refseq": "Scn8a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LTQKTFVVLNRGKTLFRFSA", "down_seq": "PALYILSPFNLIRRIAIKIL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr109", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "1356", "end_pos": "1356" }, { "start_pos": "1370", "end_pos": "1370" }, { "start_pos": "1381", "end_pos": "1381" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88420-1.1356.1356", "start_pos": 1356, "end_pos": 1356, "uniprot_canonical_ac": "O88420-1", "length": 1978, "uniprot_id": "SCN8A_RAT", "protein_name": "Sodium channel protein type 8 subunit alpha", "refseq_ac": "NP_062139", "refseq_name": "sodium channel protein type 8 subunit alpha", "gene_name": "Scn8a", "gene_names_uniprotkb": "Scn8a", "gene_names_refseq": "Scn8a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WLIFSIMGVNLFAGKYHYCF", "down_seq": "ETSEIRFEIDIVNNKTDCEK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1356", "evidence": [ { "id": "O88420", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88420#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "1356", "end_pos": "1356" }, { "start_pos": "1370", "end_pos": "1370" }, { "start_pos": "1381", "end_pos": "1381" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "O88420-1.1370.1370", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88420-1.1370.1370", "start_pos": 1370, "end_pos": 1370, "uniprot_canonical_ac": "O88420-1", "length": 1978, "uniprot_id": "SCN8A_RAT", "protein_name": "Sodium channel protein type 8 subunit alpha", "refseq_ac": "NP_062139", "refseq_name": "sodium channel protein type 8 subunit alpha", "gene_name": "Scn8a", "gene_names_uniprotkb": "Scn8a", "gene_names_refseq": "Scn8a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KYHYCFNETSEIRFEIDIVN", "down_seq": "KTDCEKLMEGNSTEIRWKNV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1370", "evidence": [ { "id": "O88420", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88420#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "1356", "end_pos": "1356" }, { "start_pos": "1370", "end_pos": "1370" }, { "start_pos": "1381", "end_pos": "1381" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O88420-1.1356.1356", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O88420-1.1381.1381", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88420-1.1381.1381", "start_pos": 1381, "end_pos": 1381, "uniprot_canonical_ac": "O88420-1", "length": 1978, "uniprot_id": "SCN8A_RAT", "protein_name": "Sodium channel protein type 8 subunit alpha", "refseq_ac": "NP_062139", "refseq_name": "sodium channel protein type 8 subunit alpha", "gene_name": "Scn8a", "gene_names_uniprotkb": "Scn8a", "gene_names_refseq": "Scn8a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IRFEIDIVNNKTDCEKLMEG", "down_seq": "STEIRWKNVKINFDNVGAGY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1381", "evidence": [ { "id": "O88420", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88420#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "1356", "end_pos": "1356" }, { "start_pos": "1370", "end_pos": "1370" }, { "start_pos": "1381", "end_pos": "1381" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O88420-1.1370.1370", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88420-1.215.215", "start_pos": 215, "end_pos": 215, "uniprot_canonical_ac": "O88420-1", "length": 1978, "uniprot_id": "SCN8A_RAT", "protein_name": "Sodium channel protein type 8 subunit alpha", "refseq_ac": "NP_062139", "refseq_name": "sodium channel protein type 8 subunit alpha", "gene_name": "Scn8a", "gene_names_uniprotkb": "Scn8a", "gene_names_refseq": "Scn8a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NWLDFSVIMMAYVTEFVDLG", "down_seq": "VSALRTFRVLRALKTISVIP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn215", "evidence": [ { "id": "O88420", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88420#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "1356", "end_pos": "1356" }, { "start_pos": "1370", "end_pos": "1370" }, { "start_pos": "1381", "end_pos": "1381" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88420-1.289.289", "start_pos": 289, "end_pos": 289, "uniprot_canonical_ac": "O88420-1", "length": 1978, "uniprot_id": "SCN8A_RAT", "protein_name": "Sodium channel protein type 8 subunit alpha", "refseq_ac": "NP_062139", "refseq_name": "sodium channel protein type 8 subunit alpha", "gene_name": "Scn8a", "gene_names_uniprotkb": "Scn8a", "gene_names_refseq": "Scn8a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GLQLFMGNLRNKCVVWPINF", "down_seq": "ESYLENGTRGFDWEEYINNK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn289", "evidence": [ { "id": "O88420", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88420#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "1356", "end_pos": "1356" }, { "start_pos": "1370", "end_pos": "1370" }, { "start_pos": "1381", "end_pos": "1381" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O88420-1.295.295", "categories": [ "glycosylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O88420-1.308.308", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88420-1.295.295", "start_pos": 295, "end_pos": 295, "uniprot_canonical_ac": "O88420-1", "length": 1978, "uniprot_id": "SCN8A_RAT", "protein_name": "Sodium channel protein type 8 subunit alpha", "refseq_ac": "NP_062139", "refseq_name": "sodium channel protein type 8 subunit alpha", "gene_name": "Scn8a", "gene_names_uniprotkb": "Scn8a", "gene_names_refseq": "Scn8a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GNLRNKCVVWPINFNESYLE", "down_seq": "GTRGFDWEEYINNKTNFYMV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn295", "evidence": [ { "id": "O88420", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88420#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "1356", "end_pos": "1356" }, { "start_pos": "1370", "end_pos": "1370" }, { "start_pos": "1381", "end_pos": "1381" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O88420-1.289.289", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O88420-1.308.308", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88420-1.308.308", "start_pos": 308, "end_pos": 308, "uniprot_canonical_ac": "O88420-1", "length": 1978, "uniprot_id": "SCN8A_RAT", "protein_name": "Sodium channel protein type 8 subunit alpha", "refseq_ac": "NP_062139", "refseq_name": "sodium channel protein type 8 subunit alpha", "gene_name": "Scn8a", "gene_names_uniprotkb": "Scn8a", "gene_names_refseq": "Scn8a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FNESYLENGTRGFDWEEYIN", "down_seq": "KTNFYMVPGMLEPLLCGNSS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn308", "evidence": [ { "id": "O88420", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88420#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "1356", "end_pos": "1356" }, { "start_pos": "1370", "end_pos": "1370" }, { "start_pos": "1381", "end_pos": "1381" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O88420-1.289.289", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O88420-1.295.295", "categories": [ "glycosylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O88420-1.326.326", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88420-1.326.326", "start_pos": 326, "end_pos": 326, "uniprot_canonical_ac": "O88420-1", "length": 1978, "uniprot_id": "SCN8A_RAT", "protein_name": "Sodium channel protein type 8 subunit alpha", "refseq_ac": "NP_062139", "refseq_name": "sodium channel protein type 8 subunit alpha", "gene_name": "Scn8a", "gene_names_uniprotkb": "Scn8a", "gene_names_refseq": "Scn8a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "INNKTNFYMVPGMLEPLLCG", "down_seq": "SSDAGQCPEGFQCMKAGRNP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn326", "evidence": [ { "id": "O88420", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88420#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "1356", "end_pos": "1356" }, { "start_pos": "1370", "end_pos": "1370" }, { "start_pos": "1381", "end_pos": "1381" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O88420-1.308.308", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88420-1.1495.1495", "start_pos": 1495, "end_pos": 1495, "uniprot_canonical_ac": "O88420-1", "length": 1978, "uniprot_id": "SCN8A_RAT", "protein_name": "Sodium channel protein type 8 subunit alpha", "refseq_ac": "NP_062139", "refseq_name": "sodium channel protein type 8 subunit alpha", "gene_name": "Scn8a", "gene_names_uniprotkb": "Scn8a", "gene_names_refseq": "Scn8a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QDIFMTEEQKKYYNAMKKLG", "down_seq": "KKPQKPIPRPLNKIQGIVFD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "site_lbl": "Ser1495" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "1356", "end_pos": "1356" }, { "start_pos": "1370", "end_pos": "1370" }, { "start_pos": "1381", "end_pos": "1381" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88420-1.518.518", "start_pos": 518, "end_pos": 518, "uniprot_canonical_ac": "O88420-1", "length": 1978, "uniprot_id": "SCN8A_RAT", "protein_name": "Sodium channel protein type 8 subunit alpha", "refseq_ac": "NP_062139", "refseq_name": "sodium channel protein type 8 subunit alpha", "gene_name": "Scn8a", "gene_names_uniprotkb": "Scn8a", "gene_names_refseq": "Scn8a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" }, { "database": "iPTMnet", "id": "O88420", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88420" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O88420", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88420", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKQKELSEGEEKGDPEKVFK", "down_seq": "ESEDGMRRKAFRLPDNRIGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O88420", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88420" } ], "site_lbl": "Ser518" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "1356", "end_pos": "1356" }, { "start_pos": "1370", "end_pos": "1370" }, { "start_pos": "1381", "end_pos": "1381" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O88420-1.520.520", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88420-1.520.520", "start_pos": 520, "end_pos": 520, "uniprot_canonical_ac": "O88420-1", "length": 1978, "uniprot_id": "SCN8A_RAT", "protein_name": "Sodium channel protein type 8 subunit alpha", "refseq_ac": "NP_062139", "refseq_name": "sodium channel protein type 8 subunit alpha", "gene_name": "Scn8a", "gene_names_uniprotkb": "Scn8a", "gene_names_refseq": "Scn8a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" }, { "database": "iPTMnet", "id": "O88420", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88420" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O88420", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88420", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QKELSEGEEKGDPEKVFKSE", "down_seq": "EDGMRRKAFRLPDNRIGRKF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88420", "url": "https://www.uniprot.org/uniprotkb/O88420" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O88420", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O88420" } ], "site_lbl": "Ser520" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "1356", "end_pos": "1356" }, { "start_pos": "1370", "end_pos": "1370" }, { "start_pos": "1381", "end_pos": "1381" }, { "start_pos": "215", "end_pos": "215" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "326", "end_pos": "326" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "520", "end_pos": "520" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O88420-1.518.518", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4G056-1.359.359", "start_pos": 359, "end_pos": 359, "uniprot_canonical_ac": "Q4G056-1", "length": 609, "uniprot_id": "TYDP1_RAT", "protein_name": "Tyrosyl-DNA phosphodiesterase 1", "refseq_ac": "NP_001026827", "refseq_name": "tyrosyl-DNA phosphodiesterase 1", "gene_name": "Tdp1", "gene_names_uniprotkb": "Tdp1", "gene_names_refseq": "Tdp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "WIDIIQEHDLSETNVYLIGS", "down_seq": "PGRFQGSHKDNWGHFRLRKL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr359", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "359", "end_pos": "359" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "61", "end_pos": "61" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4G056-1.119.119", "start_pos": 119, "end_pos": 119, "uniprot_canonical_ac": "Q4G056-1", "length": 609, "uniprot_id": "TYDP1_RAT", "protein_name": "Tyrosyl-DNA phosphodiesterase 1", "refseq_ac": "NP_001026827", "refseq_name": "tyrosyl-DNA phosphodiesterase 1", "gene_name": "Tdp1", "gene_names_uniprotkb": "Tdp1", "gene_names_refseq": "Tdp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVTQQEQPKGVPPQEKKYAP", "down_seq": "ANVTTAQKVEDRSPPDSHRA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" } ], "site_lbl": "Ser119" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "359", "end_pos": "359" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "61", "end_pos": "61" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q4G056-1.132.132", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4G056-1.132.132", "start_pos": 132, "end_pos": 132, "uniprot_canonical_ac": "Q4G056-1", "length": 609, "uniprot_id": "TYDP1_RAT", "protein_name": "Tyrosyl-DNA phosphodiesterase 1", "refseq_ac": "NP_001026827", "refseq_name": "tyrosyl-DNA phosphodiesterase 1", "gene_name": "Tdp1", "gene_names_uniprotkb": "Tdp1", "gene_names_refseq": "Tdp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" }, { "database": "iPTMnet", "id": "Q4G056", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4G056" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4G056", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4G056", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QEKKYAPSANVTTAQKVEDR", "down_seq": "PPDSHRAQRADEEYETSGEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4G056", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4G056" } ], "site_lbl": "Ser132" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "359", "end_pos": "359" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "61", "end_pos": "61" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q4G056-1.119.119", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q4G056-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q4G056-1.149.149", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4G056-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "Q4G056-1", "length": 609, "uniprot_id": "TYDP1_RAT", "protein_name": "Tyrosyl-DNA phosphodiesterase 1", "refseq_ac": "NP_001026827", "refseq_name": "tyrosyl-DNA phosphodiesterase 1", "gene_name": "Tdp1", "gene_names_uniprotkb": "Tdp1", "gene_names_refseq": "Tdp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" }, { "database": "iPTMnet", "id": "Q4G056", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4G056" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4G056", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4G056", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VEDRSPPDSHRAQRADEEYE", "down_seq": "SGEGQDIWDMLDKENPFQFY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4G056", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4G056" } ], "site_lbl": "Thr148" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "359", "end_pos": "359" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "61", "end_pos": "61" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q4G056-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q4G056-1.149.149", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4G056-1.149.149", "start_pos": 149, "end_pos": 149, "uniprot_canonical_ac": "Q4G056-1", "length": 609, "uniprot_id": "TYDP1_RAT", "protein_name": "Tyrosyl-DNA phosphodiesterase 1", "refseq_ac": "NP_001026827", "refseq_name": "tyrosyl-DNA phosphodiesterase 1", "gene_name": "Tdp1", "gene_names_uniprotkb": "Tdp1", "gene_names_refseq": "Tdp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" }, { "database": "iPTMnet", "id": "Q4G056", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4G056" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4G056", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4G056", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDRSPPDSHRAQRADEEYET", "down_seq": "GEGQDIWDMLDKENPFQFYL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4G056", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4G056" } ], "site_lbl": "Ser149" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "359", "end_pos": "359" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "61", "end_pos": "61" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q4G056-1.132.132", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q4G056-1.148.148", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4G056-1.61.61", "start_pos": 61, "end_pos": 61, "uniprot_canonical_ac": "Q4G056-1", "length": 609, "uniprot_id": "TYDP1_RAT", "protein_name": "Tyrosyl-DNA phosphodiesterase 1", "refseq_ac": "NP_001026827", "refseq_name": "tyrosyl-DNA phosphodiesterase 1", "gene_name": "Tdp1", "gene_names_uniprotkb": "Tdp1", "gene_names_refseq": "Tdp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKEPTYTCSEARKAAHKRQI", "down_seq": "PVKFNNTDSVLPHKKQKMDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4G056", "url": "https://www.uniprot.org/uniprotkb/Q4G056" } ], "site_lbl": "Ser61" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "359", "end_pos": "359" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "119", "end_pos": "119" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "61", "end_pos": "61" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q01986-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q01986-1", "length": 393, "uniprot_id": "MP2K1_RAT", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "refseq_ac": "NP_113831", "refseq_name": "dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "Map2k1", "gene_names_uniprotkb": "Map2k1; Mek1; Prkmk1", "gene_names_refseq": "Map2k1; Mek1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Inhibiting O-GlcNAcylation impacts p38 and Erk1/2 signaling and perturbs cardiomyocyte hypertrophy.", "journal": "The Journal of biological chemistry", "date": "2023-03", "authors": "Papanicolaou Kyriakos N, Jung Jessica, Ashok Deepthi, Zhang Wenxi, Modaressanavi Amir, Avila Eddie, Foster D Brian, Zachara Natasha E, O'Rourke Brian", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q01986", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q01986" } ], "reference": [ { "type": "PubMed", "id": "36642184", "url": "https://glygen.org/publication/PubMed/36642184" } ] } ], "crossref": [ { "id": "36642184", "url": "https://glygen.org/publication/PubMed/36642184", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q01986", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q01986", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "36642184", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/36642184" }, { "id": "Q01986", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q01986" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "298", "end_pos": "298" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q01986-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "Q01986-1", "length": 393, "uniprot_id": "MP2K1_RAT", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "refseq_ac": "NP_113831", "refseq_name": "dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "Map2k1", "gene_names_uniprotkb": "Map2k1; Mek1; Prkmk1", "gene_names_refseq": "Map2k1; Mek1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Identification of 2 serine residues of MEK-1 that are differentially phosphorylated during activation by raf and MEK kinase.", "journal": "The Journal of biological chemistry", "date": "1994", "authors": "Yan M, Templeton DJ", "evidence": [ { "database": "iPTMnet", "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986" } ], "reference": [ { "type": "PubMed", "id": "8034665", "url": "https://glygen.org/publication/PubMed/8034665" } ] } ], "crossref": [ { "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "8034665", "url": "https://glygen.org/publication/PubMed/8034665", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VNSRGEIKLCDFGVSGQLID", "down_seq": "MANSFVGTRSYMSPERLQGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by RAF", "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" }, { "database": "iPTMnet", "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986" }, { "database": "PubMed", "id": "8034665", "url": "https://glygen.org/publication/PubMed/8034665" } ], "site_lbl": "Ser218" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "298", "end_pos": "298" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q01986-1.222.222", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q01986-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "Q01986-1", "length": 393, "uniprot_id": "MP2K1_RAT", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "refseq_ac": "NP_113831", "refseq_name": "dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "Map2k1", "gene_names_uniprotkb": "Map2k1; Mek1; Prkmk1", "gene_names_refseq": "Map2k1; Mek1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Identification of 2 serine residues of MEK-1 that are differentially phosphorylated during activation by raf and MEK kinase.", "journal": "The Journal of biological chemistry", "date": "1994", "authors": "Yan M, Templeton DJ", "evidence": [ { "database": "iPTMnet", "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986" } ], "reference": [ { "type": "PubMed", "id": "8034665", "url": "https://glygen.org/publication/PubMed/8034665" } ] } ], "crossref": [ { "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "8034665", "url": "https://glygen.org/publication/PubMed/8034665", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GEIKLCDFGVSGQLIDSMAN", "down_seq": "FVGTRSYMSPERLQGTHYSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by RAF", "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" }, { "database": "iPTMnet", "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986" }, { "database": "PubMed", "id": "8034665", "url": "https://glygen.org/publication/PubMed/8034665" } ], "site_lbl": "Ser222" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "298", "end_pos": "298" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q01986-1.218.218", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q01986-1.286.286", "start_pos": 286, "end_pos": 286, "uniprot_canonical_ac": "Q01986-1", "length": 393, "uniprot_id": "MP2K1_RAT", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "refseq_ac": "NP_113831", "refseq_name": "dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "Map2k1", "gene_names_uniprotkb": "Map2k1; Mek1; Prkmk1", "gene_names_refseq": "Map2k1; Mek1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PDAKELELLFGCQVEGDAAE", "down_seq": "PPRPRTPGRPLSSYGMDSRP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" } ], "site_lbl": "Thr286" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "298", "end_pos": "298" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q01986-1.292.292", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q01986-1.298.298", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q01986-1.292.292", "start_pos": 292, "end_pos": 292, "uniprot_canonical_ac": "Q01986-1", "length": 393, "uniprot_id": "MP2K1_RAT", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "refseq_ac": "NP_113831", "refseq_name": "dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "Map2k1", "gene_names_uniprotkb": "Map2k1; Mek1; Prkmk1", "gene_names_refseq": "Map2k1; Mek1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Mitogen-activated protein kinase feedback phosphorylation regulates MEK1 complex formation and activation during cellular adhesion.", "journal": "Molecular and cellular biology", "date": "2004", "authors": "Eblen ST, Slack-Davis JK, Tarcsafalvi A, Parsons JT, Weber MJ, Catling AD", "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" }, { "database": "iPTMnet", "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986" } ], "reference": [ { "type": "PubMed", "id": "14993270", "url": "https://glygen.org/publication/PubMed/14993270" } ] } ], "crossref": [ { "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "14993270", "url": "https://glygen.org/publication/PubMed/14993270", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ELLFGCQVEGDAAETPPRPR", "down_seq": "PGRPLSSYGMDSRPPMAIFE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by MAPK1", "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" }, { "database": "iPTMnet", "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986" }, { "database": "PubMed", "id": "14993270", "url": "https://glygen.org/publication/PubMed/14993270" } ], "site_lbl": "Thr292" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "298", "end_pos": "298" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q01986-1.286.286", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q01986-1.298.298", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q01986-1.298.298", "start_pos": 298, "end_pos": 298, "uniprot_canonical_ac": "Q01986-1", "length": 393, "uniprot_id": "MP2K1_RAT", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 1", "refseq_ac": "NP_113831", "refseq_name": "dual specificity mitogen-activated protein kinase kinase 1", "gene_name": "Map2k1", "gene_names_uniprotkb": "Map2k1; Mek1; Prkmk1", "gene_names_refseq": "Map2k1; Mek1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Mitogen-activated protein kinase feedback phosphorylation regulates MEK1 complex formation and activation during cellular adhesion.", "journal": "Molecular and cellular biology", "date": "2004", "authors": "Eblen ST, Slack-Davis JK, Tarcsafalvi A, Parsons JT, Weber MJ, Catling AD", "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" }, { "database": "iPTMnet", "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986" } ], "reference": [ { "type": "PubMed", "id": "14993270", "url": "https://glygen.org/publication/PubMed/14993270" } ] }, { "title": "PAK1 phosphorylation of MEK1 regulates fibronectin-stimulated MAPK activation.", "journal": "The Journal of cell biology", "date": "2003", "authors": "Slack-Davis JK, Eblen ST, Zecevic M, Boerner SA, Tarcsafalvi A, Diaz HB, Marshall MS, Weber MJ, Parsons JT, Catling AD", "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" }, { "database": "iPTMnet", "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986" } ], "reference": [ { "type": "PubMed", "id": "12876277", "url": "https://glygen.org/publication/PubMed/12876277" } ] } ], "crossref": [ { "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "14993270", "url": "https://glygen.org/publication/PubMed/14993270", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12876277", "url": "https://glygen.org/publication/PubMed/12876277", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QVEGDAAETPPRPRTPGRPL", "down_seq": "SYGMDSRPPMAIFELLDYIV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PAK", "evidence": [ { "database": "UniProtKB", "id": "Q01986", "url": "https://www.uniprot.org/uniprotkb/Q01986" }, { "database": "iPTMnet", "id": "Q01986", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01986" }, { "database": "PubMed", "id": "14993270", "url": "https://glygen.org/publication/PubMed/14993270" }, { "database": "PubMed", "id": "12876277", "url": "https://glygen.org/publication/PubMed/12876277" } ], "site_lbl": "Ser298" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "218", "end_pos": "218" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "298", "end_pos": "298" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q01986-1.286.286", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q01986-1.292.292", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "G3V893-1.200.200", "start_pos": 200, "end_pos": 200, "uniprot_canonical_ac": "G3V893-1", "length": 1336, "uniprot_id": "ZN335_RAT", "protein_name": "Zinc finger protein 335", "refseq_ac": "", "refseq_name": "", "gene_name": "Zfp335; Znf335", "gene_names_uniprotkb": "Zfp335; Znf335; Zfp335", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "G3V893", "url": "https://www.uniprot.org/uniprotkb/G3V893" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MSTSTLANSLAAIEALADGP", "down_seq": "STSTCLEPAEQPPGEPSSLA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr200", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "200", "end_pos": "200" }, { "start_pos": "556", "end_pos": "556" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1006", "end_pos": "1006" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "G3V893-1.556.556", "start_pos": 556, "end_pos": 556, "uniprot_canonical_ac": "G3V893-1", "length": 1336, "uniprot_id": "ZN335_RAT", "protein_name": "Zinc finger protein 335", "refseq_ac": "", "refseq_name": "", "gene_name": "Zfp335; Znf335", "gene_names_uniprotkb": "Zfp335; Znf335; Zfp335", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "G3V893", "url": "https://www.uniprot.org/uniprotkb/G3V893" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KDVIRHAAVHSQDRKKRPDP", "down_seq": "PKLSSFPCPVCGRVYPMQKR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr556", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "200", "end_pos": "200" }, { "start_pos": "556", "end_pos": "556" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1006", "end_pos": "1006" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "G3V893-1.1006.1006", "start_pos": 1006, "end_pos": 1006, "uniprot_canonical_ac": "G3V893-1", "length": 1336, "uniprot_id": "ZN335_RAT", "protein_name": "Zinc finger protein 335", "refseq_ac": "", "refseq_name": "", "gene_name": "Zfp335; Znf335", "gene_names_uniprotkb": "Zfp335; Znf335; Zfp335", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "G3V893", "url": "https://www.uniprot.org/uniprotkb/G3V893" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "G3V893", "url": "https://www.uniprot.org/uniprotkb/G3V893", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QGSSTPPPATSHALGLLVPH", "down_seq": "PPSAAASSTKKFSCKVCSEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "G3V893", "url": "https://www.uniprot.org/uniprotkb/G3V893" } ], "site_lbl": "Ser1006" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "200", "end_pos": "200" }, { "start_pos": "556", "end_pos": "556" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1006", "end_pos": "1006" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "G3V893-1.1148.1148", "start_pos": 1148, "end_pos": 1148, "uniprot_canonical_ac": "G3V893-1", "length": 1336, "uniprot_id": "ZN335_RAT", "protein_name": "Zinc finger protein 335", "refseq_ac": "", "refseq_name": "", "gene_name": "Zfp335; Znf335", "gene_names_uniprotkb": "Zfp335; Znf335; Zfp335", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "G3V893", "url": "https://www.uniprot.org/uniprotkb/G3V893" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "G3V893", "url": "https://www.uniprot.org/uniprotkb/G3V893", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGRKTGTSTARAPAQTIILN", "down_seq": "EEETLATLHTAFQSNHGTLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "G3V893", "url": "https://www.uniprot.org/uniprotkb/G3V893" } ], "site_lbl": "Ser1148" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "200", "end_pos": "200" }, { "start_pos": "556", "end_pos": "556" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1006", "end_pos": "1006" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "G3V893-1.975.975", "start_pos": 975, "end_pos": 975, "uniprot_canonical_ac": "G3V893-1", "length": 1336, "uniprot_id": "ZN335_RAT", "protein_name": "Zinc finger protein 335", "refseq_ac": "", "refseq_name": "", "gene_name": "Zfp335; Znf335", "gene_names_uniprotkb": "Zfp335; Znf335; Zfp335", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "G3V893", "url": "https://www.uniprot.org/uniprotkb/G3V893" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "G3V893", "url": "https://www.uniprot.org/uniprotkb/G3V893" }, { "database": "iPTMnet", "id": "G3V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/G3V893" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "G3V893", "url": "https://www.uniprot.org/uniprotkb/G3V893", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "G3V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/G3V893", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTKWPLLQCGGPPRDGPEVL", "down_seq": "PTKTHHTGGSQGSSTPPPAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "G3V893", "url": "https://www.uniprot.org/uniprotkb/G3V893" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "G3V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/G3V893" } ], "site_lbl": "Ser975" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "200", "end_pos": "200" }, { "start_pos": "556", "end_pos": "556" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1006", "end_pos": "1006" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2GUZ1-1.445.445", "start_pos": 445, "end_pos": 445, "uniprot_canonical_ac": "B2GUZ1-1", "length": 961, "uniprot_id": "UBP4_RAT", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 4", "refseq_ac": "NP_001128484", "refseq_name": "ubiquitin carboxyl-terminal hydrolase 4", "gene_name": "C8h3orf62; Usp4", "gene_names_uniprotkb": "C8h3orf62; Usp4; LOC498675; Usp4", "gene_names_refseq": "Usp4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRPDAVVAKEAWENHRLRND", "down_seq": "VIVDTFHGLFKSTLVCPECA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1" } ], "site_lbl": "Ser445" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "445", "end_pos": "445" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "674", "end_pos": "674" }, { "start_pos": "679", "end_pos": "679" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GUZ1-1.655.655", "start_pos": 655, "end_pos": 655, "uniprot_canonical_ac": "B2GUZ1-1", "length": 961, "uniprot_id": "UBP4_RAT", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 4", "refseq_ac": "NP_001128484", "refseq_name": "ubiquitin carboxyl-terminal hydrolase 4", "gene_name": "C8h3orf62; Usp4", "gene_names_uniprotkb": "C8h3orf62; Usp4; LOC498675; Usp4", "gene_names_refseq": "Usp4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1" }, { "database": "iPTMnet", "id": "B2GUZ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUZ1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2GUZ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUZ1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPEEFLSSPLEPGACNGSRG", "down_seq": "YEGDEEEMDHQEEGKEQLSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2GUZ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUZ1" } ], "site_lbl": "Ser655" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "445", "end_pos": "445" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "674", "end_pos": "674" }, { "start_pos": "679", "end_pos": "679" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "B2GUZ1-1.674.674", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2GUZ1-1.674.674", "start_pos": 674, "end_pos": 674, "uniprot_canonical_ac": "B2GUZ1-1", "length": 961, "uniprot_id": "UBP4_RAT", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 4", "refseq_ac": "NP_001128484", "refseq_name": "ubiquitin carboxyl-terminal hydrolase 4", "gene_name": "C8h3orf62; Usp4", "gene_names_uniprotkb": "C8h3orf62; Usp4; LOC498675; Usp4", "gene_names_refseq": "Usp4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1" }, { "database": "iPTMnet", "id": "B2GUZ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUZ1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2GUZ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUZ1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSYEGDEEEMDHQEEGKEQL", "down_seq": "EVEESGEDSQGGDPTETTQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2GUZ1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GUZ1" } ], "site_lbl": "Ser674" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "445", "end_pos": "445" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "674", "end_pos": "674" }, { "start_pos": "679", "end_pos": "679" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "B2GUZ1-1.655.655", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "B2GUZ1-1.679.679", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2GUZ1-1.679.679", "start_pos": 679, "end_pos": 679, "uniprot_canonical_ac": "B2GUZ1-1", "length": 961, "uniprot_id": "UBP4_RAT", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 4", "refseq_ac": "NP_001128484", "refseq_name": "ubiquitin carboxyl-terminal hydrolase 4", "gene_name": "C8h3orf62; Usp4", "gene_names_uniprotkb": "C8h3orf62; Usp4; LOC498675; Usp4", "gene_names_refseq": "Usp4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DEEEMDHQEEGKEQLSEVEE", "down_seq": "GEDSQGGDPTETTQKAKGPP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GUZ1", "url": "https://www.uniprot.org/uniprotkb/B2GUZ1" } ], "site_lbl": "Ser679" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "445", "end_pos": "445" }, { "start_pos": "655", "end_pos": "655" }, { "start_pos": "674", "end_pos": "674" }, { "start_pos": "679", "end_pos": "679" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "B2GUZ1-1.674.674", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D3ZF42-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "D3ZF42-1", "length": 1037, "uniprot_id": "SENP7_RAT", "protein_name": "Sentrin-specific protease 7", "refseq_ac": "NP_001099358", "refseq_name": "sentrin-specific protease 7", "gene_name": "Impg2; Senp7", "gene_names_uniprotkb": "Impg2; Senp7; Impg2; Senp7; Susp2", "gene_names_refseq": "Senp7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" }, { "database": "iPTMnet", "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDRARPGRRRA", "down_seq": "SEIVTEGKRKKSSPADLQKI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42" } ], "site_lbl": "Ser12" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "433", "end_pos": "433" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "D3ZF42-1.13.13", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "D3ZF42-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZF42-1.13.13", "start_pos": 13, "end_pos": 13, "uniprot_canonical_ac": "D3ZF42-1", "length": 1037, "uniprot_id": "SENP7_RAT", "protein_name": "Sentrin-specific protease 7", "refseq_ac": "NP_001099358", "refseq_name": "sentrin-specific protease 7", "gene_name": "Impg2; Senp7", "gene_names_uniprotkb": "Impg2; Senp7; Impg2; Senp7; Susp2", "gene_names_refseq": "Senp7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" }, { "database": "iPTMnet", "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDRARPGRRRAS", "down_seq": "EIVTEGKRKKSSPADLQKIT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42" } ], "site_lbl": "Ser13" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "433", "end_pos": "433" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "D3ZF42-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "D3ZF42-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZF42-1.189.189", "start_pos": 189, "end_pos": 189, "uniprot_canonical_ac": "D3ZF42-1", "length": 1037, "uniprot_id": "SENP7_RAT", "protein_name": "Sentrin-specific protease 7", "refseq_ac": "NP_001099358", "refseq_name": "sentrin-specific protease 7", "gene_name": "Impg2; Senp7", "gene_names_uniprotkb": "Impg2; Senp7; Impg2; Senp7; Susp2", "gene_names_refseq": "Senp7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" }, { "database": "iPTMnet", "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGRKYLKIPSVTEASLSDTA", "down_seq": "PKSEELSSSADGSLESCQNV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42" } ], "site_lbl": "Ser189" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "433", "end_pos": "433" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZF42-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "D3ZF42-1", "length": 1037, "uniprot_id": "SENP7_RAT", "protein_name": "Sentrin-specific protease 7", "refseq_ac": "NP_001099358", "refseq_name": "sentrin-specific protease 7", "gene_name": "Impg2; Senp7", "gene_names_uniprotkb": "Impg2; Senp7; Impg2; Senp7; Susp2", "gene_names_refseq": "Senp7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RPGRRRASSEIVTEGKRKKS", "down_seq": "PADLQKITKLLTVKSEDVLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" } ], "site_lbl": "Ser25" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "433", "end_pos": "433" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "D3ZF42-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "D3ZF42-1.13.13", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D3ZF42-1.432.432", "start_pos": 432, "end_pos": 432, "uniprot_canonical_ac": "D3ZF42-1", "length": 1037, "uniprot_id": "SENP7_RAT", "protein_name": "Sentrin-specific protease 7", "refseq_ac": "NP_001099358", "refseq_name": "sentrin-specific protease 7", "gene_name": "Impg2; Senp7", "gene_names_uniprotkb": "Impg2; Senp7; Impg2; Senp7; Susp2", "gene_names_refseq": "Senp7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" }, { "database": "iPTMnet", "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPGGNSEENQLLMSAEPIVV", "down_seq": "SDEEGPVEHKNSVILKLQPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42" } ], "site_lbl": "Ser432" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "433", "end_pos": "433" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "D3ZF42-1.433.433", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZF42-1.433.433", "start_pos": 433, "end_pos": 433, "uniprot_canonical_ac": "D3ZF42-1", "length": 1037, "uniprot_id": "SENP7_RAT", "protein_name": "Sentrin-specific protease 7", "refseq_ac": "NP_001099358", "refseq_name": "sentrin-specific protease 7", "gene_name": "Impg2; Senp7", "gene_names_uniprotkb": "Impg2; Senp7; Impg2; Senp7; Susp2", "gene_names_refseq": "Senp7", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" }, { "database": "iPTMnet", "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGGNSEENQLLMSAEPIVVS", "down_seq": "DEEGPVEHKNSVILKLQPSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZF42", "url": "https://www.uniprot.org/uniprotkb/D3ZF42" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZF42", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZF42" } ], "site_lbl": "Ser433" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "13", "end_pos": "13" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "433", "end_pos": "433" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "D3ZF42-1.432.432", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62764-1.126.126", "start_pos": 126, "end_pos": 126, "uniprot_canonical_ac": "Q62764-1", "length": 361, "uniprot_id": "YBOX3_RAT", "protein_name": "Y-box-binding protein 3", "refseq_ac": "NP_114185", "refseq_name": "Y-box-binding protein 3", "gene_name": "Ybx3", "gene_names_uniprotkb": "Ybx3; Csda; Dbpa; Yb2", "gene_names_refseq": "Csda; Dbpa; Yb2; Ybx3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDVFVHQTAIKKNNPRKYLR", "down_seq": "VGDGETVEFDVVEGEKGAEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "site_lbl": "Ser126" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62764-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "Q62764-1", "length": 361, "uniprot_id": "YBOX3_RAT", "protein_name": "Y-box-binding protein 3", "refseq_ac": "NP_114185", "refseq_name": "Y-box-binding protein 3", "gene_name": "Ybx3", "gene_names_uniprotkb": "Ybx3; Csda; Dbpa; Yb2", "gene_names_refseq": "Csda; Dbpa; Yb2; Ybx3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YYGRRRGPPRNYAGEEEEEG", "down_seq": "GSSEGFEPPAADGQFSGARN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "site_lbl": "Ser193" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q62764-1.195.195", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q62764-1.196.196", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62764-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "Q62764-1", "length": 361, "uniprot_id": "YBOX3_RAT", "protein_name": "Y-box-binding protein 3", "refseq_ac": "NP_114185", "refseq_name": "Y-box-binding protein 3", "gene_name": "Ybx3", "gene_names_uniprotkb": "Ybx3; Csda; Dbpa; Yb2", "gene_names_refseq": "Csda; Dbpa; Yb2; Ybx3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRRRGPPRNYAGEEEEEGSG", "down_seq": "SEGFEPPAADGQFSGARNQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "site_lbl": "Ser195" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q62764-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q62764-1.196.196", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62764-1.196.196", "start_pos": 196, "end_pos": 196, "uniprot_canonical_ac": "Q62764-1", "length": 361, "uniprot_id": "YBOX3_RAT", "protein_name": "Y-box-binding protein 3", "refseq_ac": "NP_114185", "refseq_name": "Y-box-binding protein 3", "gene_name": "Ybx3", "gene_names_uniprotkb": "Ybx3; Csda; Dbpa; Yb2", "gene_names_refseq": "Csda; Dbpa; Yb2; Ybx3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRRGPPRNYAGEEEEEGSGS", "down_seq": "EGFEPPAADGQFSGARNQLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "site_lbl": "Ser196" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q62764-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q62764-1.195.195", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62764-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "Q62764-1", "length": 361, "uniprot_id": "YBOX3_RAT", "protein_name": "Y-box-binding protein 3", "refseq_ac": "NP_114185", "refseq_name": "Y-box-binding protein 3", "gene_name": "Ybx3", "gene_names_uniprotkb": "Ybx3; Csda; Dbpa; Yb2", "gene_names_refseq": "Csda; Dbpa; Yb2; Ybx3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "M", "down_seq": "EAGEATTGGTTLPQAAADAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "site_lbl": "Ser2" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62764-1.313.313", "start_pos": 313, "end_pos": 313, "uniprot_canonical_ac": "Q62764-1", "length": 361, "uniprot_id": "YBOX3_RAT", "protein_name": "Y-box-binding protein 3", "refseq_ac": "NP_114185", "refseq_name": "Y-box-binding protein 3", "gene_name": "Ybx3", "gene_names_uniprotkb": "Ybx3; Csda; Dbpa; Yb2", "gene_names_refseq": "Csda; Dbpa; Yb2; Ybx3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AIGEAEDKENQQAANGPNQP", "down_seq": "ARRGFRRPYNYRRRPRPLNA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "site_lbl": "Ser313" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62764-1.335.335", "start_pos": 335, "end_pos": 335, "uniprot_canonical_ac": "Q62764-1", "length": 361, "uniprot_id": "YBOX3_RAT", "protein_name": "Y-box-binding protein 3", "refseq_ac": "NP_114185", "refseq_name": "Y-box-binding protein 3", "gene_name": "Ybx3", "gene_names_uniprotkb": "Ybx3; Csda; Dbpa; Yb2", "gene_names_refseq": "Csda; Dbpa; Yb2; Ybx3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRGFRRPYNYRRRPRPLNAV", "down_seq": "QDGKETKAGEAPTENPAPAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "site_lbl": "Ser335" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62764-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "Q62764-1", "length": 361, "uniprot_id": "YBOX3_RAT", "protein_name": "Y-box-binding protein 3", "refseq_ac": "NP_114185", "refseq_name": "Y-box-binding protein 3", "gene_name": "Ybx3", "gene_names_uniprotkb": "Ybx3; Csda; Dbpa; Yb2", "gene_names_refseq": "Csda; Dbpa; Yb2; Ybx3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLPQAAADAPAAAPPDPAPK", "down_seq": "PAASGAPQAPAPAALLAGSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "site_lbl": "Ser33" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q62764-1.52.52", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62764-1.358.358", "start_pos": 358, "end_pos": 358, "uniprot_canonical_ac": "Q62764-1", "length": 361, "uniprot_id": "YBOX3_RAT", "protein_name": "Y-box-binding protein 3", "refseq_ac": "NP_114185", "refseq_name": "Y-box-binding protein 3", "gene_name": "Ybx3", "gene_names_uniprotkb": "Ybx3; Csda; Dbpa; Yb2", "gene_names_refseq": "Csda; Dbpa; Yb2; Ybx3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GKETKAGEAPTENPAPATEQ", "down_seq": "SAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "site_lbl": "Ser358" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q62764-1.359.359", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62764-1.359.359", "start_pos": 359, "end_pos": 359, "uniprot_canonical_ac": "Q62764-1", "length": 361, "uniprot_id": "YBOX3_RAT", "protein_name": "Y-box-binding protein 3", "refseq_ac": "NP_114185", "refseq_name": "Y-box-binding protein 3", "gene_name": "Ybx3", "gene_names_uniprotkb": "Ybx3; Csda; Dbpa; Yb2", "gene_names_refseq": "Csda; Dbpa; Yb2; Ybx3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KETKAGEAPTENPAPATEQS", "down_seq": "AE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "site_lbl": "Ser359" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q62764-1.358.358", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62764-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "Q62764-1", "length": 361, "uniprot_id": "YBOX3_RAT", "protein_name": "Y-box-binding protein 3", "refseq_ac": "NP_114185", "refseq_name": "Y-box-binding protein 3", "gene_name": "Ybx3", "gene_names_uniprotkb": "Ybx3; Csda; Dbpa; Yb2", "gene_names_refseq": "Csda; Dbpa; Yb2; Ybx3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSPAASGAPQAPAPAALLAG", "down_seq": "PGGDAAPGPAPASSAPAGSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62764", "url": "https://www.uniprot.org/uniprotkb/Q62764" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62764", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62764" } ], "site_lbl": "Ser52" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "126", "end_pos": "126" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "195", "end_pos": "195" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q62764-1.33.33", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P33436-1.460.460", "start_pos": 460, "end_pos": 460, "uniprot_canonical_ac": "P33436-1", "length": 662, "uniprot_id": "MMP2_RAT", "protein_name": "72 kDa type IV collagenase", "refseq_ac": "NP_112316", "refseq_name": "72 kDa type IV collagenase precursor", "gene_name": "Mmp2", "gene_names_uniprotkb": "Mmp2", "gene_names_refseq": "Mmp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P33436", "url": "https://www.uniprot.org/uniprotkb/P33436" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GIQELYGPSPDADTDTGTGP", "down_seq": "PTLGPVTPEICKQDIVFDGI", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr460", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "460", "end_pos": "460" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "644", "end_pos": "644" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "542", "end_pos": "542" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33436-1.500.500", "start_pos": 500, "end_pos": 500, "uniprot_canonical_ac": "P33436-1", "length": 662, "uniprot_id": "MMP2_RAT", "protein_name": "72 kDa type IV collagenase", "refseq_ac": "NP_112316", "refseq_name": "72 kDa type IV collagenase precursor", "gene_name": "Mmp2", "gene_names_uniprotkb": "Mmp2", "gene_names_refseq": "Mmp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P33436", "url": "https://www.uniprot.org/uniprotkb/P33436" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IAQIRGEIFFFKDRFIWRTV", "down_seq": "PRDKPTGPLLVATFWPELPE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr500", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "460", "end_pos": "460" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "644", "end_pos": "644" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "542", "end_pos": "542" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33436-1.575.575", "start_pos": 575, "end_pos": 575, "uniprot_canonical_ac": "P33436-1", "length": 662, "uniprot_id": "MMP2_RAT", "protein_name": "72 kDa type IV collagenase", "refseq_ac": "NP_112316", "refseq_name": "72 kDa type IV collagenase precursor", "gene_name": "Mmp2", "gene_names_uniprotkb": "Mmp2", "gene_names_refseq": "Mmp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P33436", "url": "https://www.uniprot.org/uniprotkb/P33436" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P33436", "url": "https://www.uniprot.org/uniprotkb/P33436", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PKPLTSLGLPPDVQQVDAAF", "down_seq": "WSKNKKTYIFSGDKFWRYNE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn575", "evidence": [ { "id": "P33436", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33436#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "460", "end_pos": "460" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "644", "end_pos": "644" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "542", "end_pos": "542" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33436-1.644.644", "start_pos": 644, "end_pos": 644, "uniprot_canonical_ac": "P33436-1", "length": 662, "uniprot_id": "MMP2_RAT", "protein_name": "72 kDa type IV collagenase", "refseq_ac": "NP_112316", "refseq_name": "72 kDa type IV collagenase precursor", "gene_name": "Mmp2", "gene_names_uniprotkb": "Mmp2", "gene_names_refseq": "Mmp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P33436", "url": "https://www.uniprot.org/uniprotkb/P33436" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P33436", "url": "https://www.uniprot.org/uniprotkb/P33436", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DLQGGGHSYFFKGAYYLKLE", "down_seq": "QSLKSVKFGSIKSDWLGC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn644", "evidence": [ { "id": "P33436", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33436#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "460", "end_pos": "460" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "644", "end_pos": "644" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "542", "end_pos": "542" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33436-1.542.542", "start_pos": 542, "end_pos": 542, "uniprot_canonical_ac": "P33436-1", "length": 662, "uniprot_id": "MMP2_RAT", "protein_name": "72 kDa type IV collagenase", "refseq_ac": "NP_112316", "refseq_name": "72 kDa type IV collagenase precursor", "gene_name": "Mmp2", "gene_names_uniprotkb": "Mmp2", "gene_names_refseq": "Mmp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P33436", "url": "https://www.uniprot.org/uniprotkb/P33436" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A0A8I5Y0Q9", "url": "https://www.uniprot.org/uniprotkb/A0A8I5Y0Q9", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "IDAVYEAPQEEKAVFFAGNE", "down_seq": "WVYSASTLERGYPKPLTSLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by PKDCC", "evidence": [ { "database": "UniProtKB", "id": "A0A8I5Y0Q9", "url": "https://www.uniprot.org/uniprotkb/A0A8I5Y0Q9" } ], "site_lbl": "Tyr542" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "460", "end_pos": "460" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "644", "end_pos": "644" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "542", "end_pos": "542" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WU34-1.91.91", "start_pos": 91, "end_pos": 91, "uniprot_canonical_ac": "Q9WU34-1", "length": 358, "uniprot_id": "SEPT3_RAT", "protein_name": "Neuronal-specific septin-3", "refseq_ac": "NP_062248", "refseq_name": "neuronal-specific septin-3", "gene_name": "Septin3", "gene_names_uniprotkb": "Septin3; Sept3", "gene_names_refseq": "Sep3; Sept3; Septin3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WU34", "url": "https://www.uniprot.org/uniprotkb/Q9WU34" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Phosphorylation of septin 3 on Ser-91 by cGMP-dependent protein kinase-I in nerve terminals.", "journal": "The Biochemical journal", "date": "2004", "authors": "Xue J, Milburn PJ, Hanna BT, Graham ME, Rostas JA, Robinson PJ", "evidence": [ { "database": "UniProtKB", "id": "Q9WU34", "url": "https://www.uniprot.org/uniprotkb/Q9WU34" }, { "database": "iPTMnet", "id": "Q9WU34", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WU34" } ], "reference": [ { "type": "PubMed", "id": "15107017", "url": "https://glygen.org/publication/PubMed/15107017" } ] } ], "crossref": [ { "id": "Q9WU34", "url": "https://www.uniprot.org/uniprotkb/Q9WU34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15107017", "url": "https://glygen.org/publication/PubMed/15107017", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WU34", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WU34", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLGKSTLVNTLFKSQVSRKA", "down_seq": "SWNREEKIPKTVEIKAIGHV", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes phosphorylation by PKG.", "evidence": [ { "database": "UniProtKB", "id": "Q9WU34", "url": "https://www.uniprot.org/uniprotkb/Q9WU34" }, { "database": "PubMed", "id": "15107017", "url": "https://glygen.org/publication/PubMed/15107017" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WU34", "url": "https://www.uniprot.org/uniprotkb/Q9WU34" }, { "database": "PubMed", "id": "15107017", "url": "https://glygen.org/publication/PubMed/15107017" }, { "database": "iPTMnet", "id": "Q9WU34", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WU34" } ], "site_lbl": "Ser91" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "91", "end_pos": "91" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9WU34-1.92.92", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WU34-1.92.92", "start_pos": 92, "end_pos": 92, "uniprot_canonical_ac": "Q9WU34-1", "length": 358, "uniprot_id": "SEPT3_RAT", "protein_name": "Neuronal-specific septin-3", "refseq_ac": "NP_062248", "refseq_name": "neuronal-specific septin-3", "gene_name": "Septin3", "gene_names_uniprotkb": "Septin3; Sept3", "gene_names_refseq": "Sep3; Sept3; Septin3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WU34", "url": "https://www.uniprot.org/uniprotkb/Q9WU34" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Phosphorylation of septin 3 on Ser-91 by cGMP-dependent protein kinase-I in nerve terminals.", "journal": "The Biochemical journal", "date": "2004", "authors": "Xue J, Milburn PJ, Hanna BT, Graham ME, Rostas JA, Robinson PJ", "evidence": [ { "database": "UniProtKB", "id": "Q9WU34", "url": "https://www.uniprot.org/uniprotkb/Q9WU34" }, { "database": "iPTMnet", "id": "Q9WU34", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WU34" } ], "reference": [ { "type": "PubMed", "id": "15107017", "url": "https://glygen.org/publication/PubMed/15107017" } ] } ], "crossref": [ { "id": "Q9WU34", "url": "https://www.uniprot.org/uniprotkb/Q9WU34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15107017", "url": "https://glygen.org/publication/PubMed/15107017", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGKSTLVNTLFKSQVSRKAS", "down_seq": "WNREEKIPKTVEIKAIGHVI", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Increases phosphorylation by PKG.", "evidence": [ { "database": "UniProtKB", "id": "Q9WU34", "url": "https://www.uniprot.org/uniprotkb/Q9WU34" }, { "database": "PubMed", "id": "15107017", "url": "https://glygen.org/publication/PubMed/15107017" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "91", "end_pos": "91" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9WU34-1.91.91", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WUF4-1.17.17", "start_pos": 17, "end_pos": 17, "uniprot_canonical_ac": "Q9WUF4-1", "length": 100, "uniprot_id": "VAMP8_RAT", "protein_name": "Vesicle-associated membrane protein 8", "refseq_ac": "NP_114015", "refseq_name": "vesicle-associated membrane protein 8", "gene_name": "Vamp8", "gene_names_uniprotkb": "Vamp8", "gene_names_refseq": "Vamp8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEASGSAGNDRVRNLQ", "down_seq": "EVEGVKNIMTQNVERILARG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "site_lbl": "Ser17" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "17", "end_pos": "17" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q9WUF4-1.4.4", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9WUF4-1.27.27", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WUF4-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "Q9WUF4-1", "length": 100, "uniprot_id": "VAMP8_RAT", "protein_name": "Vesicle-associated membrane protein 8", "refseq_ac": "NP_114015", "refseq_name": "vesicle-associated membrane protein 8", "gene_name": "Vamp8", "gene_names_uniprotkb": "Vamp8", "gene_names_refseq": "Vamp8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AGNDRVRNLQSEVEGVKNIM", "down_seq": "QNVERILARGENLDHLRNKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "site_lbl": "Thr27" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "17", "end_pos": "17" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9WUF4-1.17.17", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9WUF4-1.47.47", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WUF4-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "Q9WUF4-1", "length": 100, "uniprot_id": "VAMP8_RAT", "protein_name": "Vesicle-associated membrane protein 8", "refseq_ac": "NP_114015", "refseq_name": "vesicle-associated membrane protein 8", "gene_name": "Vamp8", "gene_names_uniprotkb": "Vamp8", "gene_names_refseq": "Vamp8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TQNVERILARGENLDHLRNK", "down_seq": "EDLEATSEHFKTTSQKVARK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "site_lbl": "Thr47" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "17", "end_pos": "17" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9WUF4-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9WUF4-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9WUF4-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WUF4-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "Q9WUF4-1", "length": 100, "uniprot_id": "VAMP8_RAT", "protein_name": "Vesicle-associated membrane protein 8", "refseq_ac": "NP_114015", "refseq_name": "vesicle-associated membrane protein 8", "gene_name": "Vamp8", "gene_names_uniprotkb": "Vamp8", "gene_names_refseq": "Vamp8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEA", "down_seq": "GSAGNDRVRNLQSEVEGVKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "site_lbl": "Ser4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "17", "end_pos": "17" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q9WUF4-1.17.17", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WUF4-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "Q9WUF4-1", "length": 100, "uniprot_id": "VAMP8_RAT", "protein_name": "Vesicle-associated membrane protein 8", "refseq_ac": "NP_114015", "refseq_name": "vesicle-associated membrane protein 8", "gene_name": "Vamp8", "gene_names_uniprotkb": "Vamp8", "gene_names_refseq": "Vamp8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ILARGENLDHLRNKTEDLEA", "down_seq": "SEHFKTTSQKVARKFWWKNV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "site_lbl": "Thr53" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "17", "end_pos": "17" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9WUF4-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9WUF4-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WUF4-1.54.54", "start_pos": 54, "end_pos": 54, "uniprot_canonical_ac": "Q9WUF4-1", "length": 100, "uniprot_id": "VAMP8_RAT", "protein_name": "Vesicle-associated membrane protein 8", "refseq_ac": "NP_114015", "refseq_name": "vesicle-associated membrane protein 8", "gene_name": "Vamp8", "gene_names_uniprotkb": "Vamp8", "gene_names_refseq": "Vamp8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LARGENLDHLRNKTEDLEAT", "down_seq": "EHFKTTSQKVARKFWWKNVK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WUF4", "url": "https://www.uniprot.org/uniprotkb/Q9WUF4" } ], "site_lbl": "Ser54" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "17", "end_pos": "17" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9WUF4-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9WUF4-1.53.53", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63537-1.508.508", "start_pos": 508, "end_pos": 508, "uniprot_canonical_ac": "Q63537-1", "length": 586, "uniprot_id": "SYN2_RAT", "protein_name": "Synapsin-2", "refseq_ac": "NP_001029192", "refseq_name": "synapsin-2 isoform 1", "gene_name": "Syn2", "gene_names_uniprotkb": "Syn2", "gene_names_refseq": "Syn2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSSSSSSSSSSSAPQRPGGP", "down_seq": "STQVNASSSSNSLAEPQAPQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr508", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "508", "end_pos": "508" }, { "start_pos": "77", "end_pos": "77" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "426", "end_pos": "426" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63537-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "Q63537-1", "length": 586, "uniprot_id": "SYN2_RAT", "protein_name": "Synapsin-2", "refseq_ac": "NP_001029192", "refseq_name": "synapsin-2 isoform 1", "gene_name": "Syn2", "gene_names_uniprotkb": "Syn2", "gene_names_refseq": "Syn2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ERRPPPAQAPAPQPAPQPAP", "down_seq": "PSVGSSFFSSLSQAVKQTAA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr77", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "508", "end_pos": "508" }, { "start_pos": "77", "end_pos": "77" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "426", "end_pos": "426" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63537-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q63537-1", "length": 586, "uniprot_id": "SYN2_RAT", "protein_name": "Synapsin-2", "refseq_ac": "NP_001029192", "refseq_name": "synapsin-2 isoform 1", "gene_name": "Syn2", "gene_names_uniprotkb": "Syn2", "gene_names_refseq": "Syn2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q63537", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q63537" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] } ], "crossref": [ { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63537", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q63537", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "Q63537", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q63537" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "508", "end_pos": "508" }, { "start_pos": "77", "end_pos": "77" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "426", "end_pos": "426" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q63537-1.10.10", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63537-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "Q63537-1", "length": 586, "uniprot_id": "SYN2_RAT", "protein_name": "Synapsin-2", "refseq_ac": "NP_001029192", "refseq_name": "synapsin-2 isoform 1", "gene_name": "Syn2", "gene_names_uniprotkb": "Syn2", "gene_names_refseq": "Syn2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "A phospho-switch controls the dynamic association of synapsins with synaptic vesicles.", "journal": "Neuron", "date": "1999", "authors": "Hosaka M, Hammer RE, Sudhof TC", "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" }, { "database": "iPTMnet", "id": "Q63537", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63537" } ], "reference": [ { "type": "PubMed", "id": "10571231", "url": "https://glygen.org/publication/PubMed/10571231" } ] } ], "crossref": [ { "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q63537", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63537", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "10571231", "url": "https://glygen.org/publication/PubMed/10571231", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MMNFLRRRL", "down_seq": "DSSFIANLPNGYMTDLQRPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA and CaMK1", "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" }, { "database": "iPTMnet", "id": "Q63537", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63537" }, { "database": "PubMed", "id": "10571231", "url": "https://glygen.org/publication/PubMed/10571231" } ], "site_lbl": "Ser10" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "508", "end_pos": "508" }, { "start_pos": "77", "end_pos": "77" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "426", "end_pos": "426" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q63537-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63537-1.422.422", "start_pos": 422, "end_pos": 422, "uniprot_canonical_ac": "Q63537-1", "length": 586, "uniprot_id": "SYN2_RAT", "protein_name": "Synapsin-2", "refseq_ac": "NP_001029192", "refseq_name": "synapsin-2 isoform 1", "gene_name": "Syn2", "gene_names_uniprotkb": "Syn2", "gene_names_refseq": "Syn2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" }, { "database": "iPTMnet", "id": "Q63537", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63537" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63537", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63537", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EDRQLITDLVISKMNQLLSR", "down_seq": "PALSPQRPLTTQQPQSGTLK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63537", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63537" } ], "site_lbl": "Thr422" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "508", "end_pos": "508" }, { "start_pos": "77", "end_pos": "77" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "426", "end_pos": "426" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q63537-1.426.426", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63537-1.426.426", "start_pos": 426, "end_pos": 426, "uniprot_canonical_ac": "Q63537-1", "length": 586, "uniprot_id": "SYN2_RAT", "protein_name": "Synapsin-2", "refseq_ac": "NP_001029192", "refseq_name": "synapsin-2 isoform 1", "gene_name": "Syn2", "gene_names_uniprotkb": "Syn2", "gene_names_refseq": "Syn2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" }, { "database": "iPTMnet", "id": "Q63537", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63537" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63537", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63537", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LITDLVISKMNQLLSRTPAL", "down_seq": "PQRPLTTQQPQSGTLKEPDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63537", "url": "https://www.uniprot.org/uniprotkb/Q63537" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63537", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63537" } ], "site_lbl": "Ser426" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "508", "end_pos": "508" }, { "start_pos": "77", "end_pos": "77" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "422", "end_pos": "422" }, { "start_pos": "426", "end_pos": "426" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q63537-1.422.422", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q00900-1.2198.2198", "start_pos": 2198, "end_pos": 2198, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YGDQEGAYEHHGSSLFPEGP", "down_seq": "DYVFSHLPLHSQQQVRAPIP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2198", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q00900-1.861.861", "start_pos": 861, "end_pos": 861, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GPVSPEWAPPGDGAESGSRP", "down_seq": "PSQQVPQHSYHGQPRLVRQH", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr861", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q00900-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Genome-wide repression of NF-kappaB target genes by transcription factor MIBP1 and its modulation by O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase.", "journal": "The Journal of biological chemistry", "date": "2012", "authors": "Iwashita Y, Fukuchi N, Waki M, Hayashi K, Tahira T", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q00900", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q00900" } ], "reference": [ { "type": "PubMed", "id": "22294689", "url": "https://glygen.org/publication/PubMed/22294689" } ] } ], "crossref": [ { "id": "22294689", "url": "https://glygen.org/publication/PubMed/22294689", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q00900", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q00900", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "22294689", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/22294689" }, { "id": "Q00900", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q00900" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q00900-1.1045.1045", "start_pos": 1045, "end_pos": 1045, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRCSSEQMPCPHPTEVPEIR", "down_seq": "KSFDYGNLSHAPVAGASPST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "site_lbl": "Ser1045" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q00900-1.1438.1438", "start_pos": 1438, "end_pos": 1438, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" }, { "database": "iPTMnet", "id": "Q00900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00900" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q00900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00900", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LCLPSTSDSAASLGGSKRML", "down_seq": "PASSLELFMETKQQKRVKEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q00900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00900" } ], "site_lbl": "Ser1438" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q00900-1.1442.1442", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q00900-1.1442.1442", "start_pos": 1442, "end_pos": 1442, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STSDSAASLGGSKRMLSPAS", "down_seq": "LELFMETKQQKRVKEEKMYG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "site_lbl": "Ser1442" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q00900-1.1438.1438", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q00900-1.2109.2109", "start_pos": 2109, "end_pos": 2109, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "REMSQGDASPRRHLSPRRPL", "down_seq": "PGKDITTRRDLSPRRERRYM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "site_lbl": "Ser2109" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q00900-1.2288.2288", "start_pos": 2288, "end_pos": 2288, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLSRRHEKQAPHVLQSSGLP", "down_seq": "SPSSPRLLMKQSTSEDSLNS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "site_lbl": "Ser2288" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q00900-1.2292.2292", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q00900-1.2292.2292", "start_pos": 2292, "end_pos": 2292, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RHEKQAPHVLQSSGLPSSPS", "down_seq": "PRLLMKQSTSEDSLNSTERE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "site_lbl": "Ser2292" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q00900-1.2288.2288", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q00900-1.2420.2420", "start_pos": 2420, "end_pos": 2420, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FYSKGSVDEKQVDFQSSKEL", "down_seq": "LSTEEGNEPSSEKNRLH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "site_lbl": "Ser2420" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q00900-1.2422.2422", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q00900-1.2422.2422", "start_pos": 2422, "end_pos": 2422, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKGSVDEKQVDFQSSKELSL", "down_seq": "TEEGNEPSSEKNRLH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "site_lbl": "Ser2422" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q00900-1.2420.2420", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q00900-1.816.816", "start_pos": 816, "end_pos": 816, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" }, { "database": "iPTMnet", "id": "Q00900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00900" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q00900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00900", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISVIQHTNSLSRPNSFERSE", "down_seq": "TEMAVSTQDKTPSPSEMGDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q00900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00900" } ], "site_lbl": "Ser816" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q00900-1.947.947", "start_pos": 947, "end_pos": 947, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPAEKLPPKKKRLRLADMEH", "down_seq": "SGESSFESTGTGLSRSPSQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "site_lbl": "Ser947" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q00900-1.952.952", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q00900-1.952.952", "start_pos": 952, "end_pos": 952, "uniprot_canonical_ac": "Q00900-1", "length": 2437, "uniprot_id": "ZEP2_RAT", "protein_name": "Human immunodeficiency virus type I enhancer-binding protein 2 homolog", "refseq_ac": "NP_077051", "refseq_name": "human immunodeficiency virus type I enhancer-binding protein 2 homolog", "gene_name": "Hivep2", "gene_names_uniprotkb": "Hivep2; Agie-bp1; Mibp1", "gene_names_refseq": "Hivep2; MIBP1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPPKKKRLRLADMEHSSGES", "down_seq": "FESTGTGLSRSPSQESNLSH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00900", "url": "https://www.uniprot.org/uniprotkb/Q00900" } ], "site_lbl": "Ser952" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "2198", "end_pos": "2198" }, { "start_pos": "861", "end_pos": "861" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1438", "end_pos": "1438" }, { "start_pos": "1442", "end_pos": "1442" }, { "start_pos": "2109", "end_pos": "2109" }, { "start_pos": "2288", "end_pos": "2288" }, { "start_pos": "2292", "end_pos": "2292" }, { "start_pos": "2420", "end_pos": "2420" }, { "start_pos": "2422", "end_pos": "2422" }, { "start_pos": "816", "end_pos": "816" }, { "start_pos": "947", "end_pos": "947" }, { "start_pos": "952", "end_pos": "952" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q00900-1.947.947", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P37091-1.210.210", "start_pos": 210, "end_pos": 210, "uniprot_canonical_ac": "P37091-1", "length": 650, "uniprot_id": "SCNNG_RAT", "protein_name": "Epithelial sodium channel subunit gamma", "refseq_ac": "NP_058742", "refseq_name": "epithelial sodium channel subunit gamma", "gene_name": "Scnn1g", "gene_names_uniprotkb": "Scnn1g; RCNaCh2", "gene_names_refseq": "ENaC; Scnn1g", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ASNVMHVHESKKLVGFQLCS", "down_seq": "DTSDCATYTFSSGINAIQEW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn210", "evidence": [ { "id": "P37091", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P37091#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "498", "end_pos": "498" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P37091-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "P37091-1", "length": 650, "uniprot_id": "SCNNG_RAT", "protein_name": "Epithelial sodium channel subunit gamma", "refseq_ac": "NP_058742", "refseq_name": "epithelial sodium channel subunit gamma", "gene_name": "Scnn1g", "gene_names_uniprotkb": "Scnn1g; RCNaCh2", "gene_names_refseq": "ENaC; Scnn1g", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YSAEELLVTCFFDGMSCDAR", "down_seq": "FTLFHHPMYGNCYTFNNKEN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn272", "evidence": [ { "id": "P37091", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P37091#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "498", "end_pos": "498" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P37091-1.498.498", "start_pos": 498, "end_pos": 498, "uniprot_canonical_ac": "P37091-1", "length": 650, "uniprot_id": "SCNNG_RAT", "protein_name": "Epithelial sodium channel subunit gamma", "refseq_ac": "NP_058742", "refseq_name": "epithelial sodium channel subunit gamma", "gene_name": "Scnn1g", "gene_names_uniprotkb": "Scnn1g; RCNaCh2", "gene_names_refseq": "ENaC; Scnn1g", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EKWLLNVLTWDQSQQINKKL", "down_seq": "KTDLAKLLIFYKDLNQRSIM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn498", "evidence": [ { "id": "P37091", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P37091#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "498", "end_pos": "498" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P37091-1.13.13", "start_pos": 13, "end_pos": 13, "uniprot_canonical_ac": "P37091-1", "length": 650, "uniprot_id": "SCNNG_RAT", "protein_name": "Epithelial sodium channel subunit gamma", "refseq_ac": "NP_058742", "refseq_name": "epithelial sodium channel subunit gamma", "gene_name": "Scnn1g", "gene_names_uniprotkb": "Scnn1g; RCNaCh2", "gene_names_refseq": "ENaC; Scnn1g", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Regulation of stability and function of the epithelial Na+ channel (ENaC) by ubiquitination.", "journal": "The EMBO journal", "date": "1997", "authors": "Staub O, Gautschi I, Ishikawa T, Breitschopf K, Ciechanover A, Schild L, Rotin D", "evidence": [ { "database": "UniProtKB", "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091" } ], "reference": [ { "type": "PubMed", "id": "9351815", "url": "https://glygen.org/publication/PubMed/9351815" } ] } ], "crossref": [ { "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9351815", "url": "https://glygen.org/publication/PubMed/9351815", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "MAPGEKIKAKIK", "down_seq": "NLPVRGPQAPTIKDLMHWYC", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Loss of ubiquitination. Increased expression of functional channels at the plasma membrane; when associated with R-6.", "evidence": [ { "database": "UniProtKB", "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091" }, { "database": "PubMed", "id": "9351815", "url": "https://glygen.org/publication/PubMed/9351815" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "498", "end_pos": "498" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P37091-1.6.6", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P37091-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "P37091-1", "length": 650, "uniprot_id": "SCNNG_RAT", "protein_name": "Epithelial sodium channel subunit gamma", "refseq_ac": "NP_058742", "refseq_name": "epithelial sodium channel subunit gamma", "gene_name": "Scnn1g", "gene_names_uniprotkb": "Scnn1g; RCNaCh2", "gene_names_refseq": "ENaC; Scnn1g", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "A mutation causing pseudohypoaldosteronism type 1 identifies a conserved glycine that is involved in the gating of the epithelial sodium channel.", "journal": "The EMBO journal", "date": "1997-03-03", "authors": "Gr\u00fcnder S, Firsov D, Chang S S, Jaeger N F, Gautschi I, Schild L, Lifton R P, Rossier B C", "evidence": [ { "database": "UniProtKB", "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091" } ], "reference": [ { "type": "PubMed", "id": "9118951", "url": "https://glygen.org/publication/PubMed/9118951" } ] } ], "crossref": [ { "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9118951", "url": "https://glygen.org/publication/PubMed/9118951", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "PQAPTIKDLMHWYCMNTNTH", "down_seq": "CRRIVVSRGRLRRLLWIAFT", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "S", "comment": "Decreased sodium ion transmembrane transport. Decreased channel open probability.", "evidence": [ { "database": "UniProtKB", "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091" }, { "database": "PubMed", "id": "9118951", "url": "https://glygen.org/publication/PubMed/9118951" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "498", "end_pos": "498" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P37091-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "P37091-1", "length": 650, "uniprot_id": "SCNNG_RAT", "protein_name": "Epithelial sodium channel subunit gamma", "refseq_ac": "NP_058742", "refseq_name": "epithelial sodium channel subunit gamma", "gene_name": "Scnn1g", "gene_names_uniprotkb": "Scnn1g; RCNaCh2", "gene_names_refseq": "ENaC; Scnn1g", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Regulation of stability and function of the epithelial Na+ channel (ENaC) by ubiquitination.", "journal": "The EMBO journal", "date": "1997", "authors": "Staub O, Gautschi I, Ishikawa T, Breitschopf K, Ciechanover A, Schild L, Rotin D", "evidence": [ { "database": "UniProtKB", "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091" } ], "reference": [ { "type": "PubMed", "id": "9351815", "url": "https://glygen.org/publication/PubMed/9351815" } ] } ], "crossref": [ { "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9351815", "url": "https://glygen.org/publication/PubMed/9351815", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "MAPGE", "down_seq": "IKAKIKKNLPVRGPQAPTIK", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Loss of ubiquitination. Increased expression of functional channels at the plasma membrane; when associated with R-13.", "evidence": [ { "database": "UniProtKB", "id": "P37091", "url": "https://www.uniprot.org/uniprotkb/P37091" }, { "database": "PubMed", "id": "9351815", "url": "https://glygen.org/publication/PubMed/9351815" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "210", "end_pos": "210" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "498", "end_pos": "498" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "6", "end_pos": "6" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P37091-1.13.13", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JLS4-1.116.116", "start_pos": 116, "end_pos": 116, "uniprot_canonical_ac": "Q9JLS4-1", "length": 348, "uniprot_id": "SFRP4_RAT", "protein_name": "Secreted frizzled-related protein 4", "refseq_ac": "NP_445996", "refseq_name": "secreted frizzled-related protein 4 precursor", "gene_name": "Sfrp4", "gene_names_uniprotkb": "Sfrp4; Ddc4; Frp", "gene_names_refseq": "Sfrp4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JLS4", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JLS4", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PCKSVCQRARDDCEPLMKMY", "down_seq": "HSWPESLACDELPVYDRGVC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn116", "evidence": [ { "id": "Q9JLS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "68", "end_pos": "68" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JLS4-1.194.194", "start_pos": 194, "end_pos": 194, "uniprot_canonical_ac": "Q9JLS4-1", "length": 348, "uniprot_id": "SFRP4_RAT", "protein_name": "Secreted frizzled-related protein 4", "refseq_ac": "NP_445996", "refseq_name": "secreted frizzled-related protein 4 precursor", "gene_name": "Sfrp4", "gene_names_uniprotkb": "Sfrp4; Ddc4; Frp", "gene_names_refseq": "Sfrp4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JLS4", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JLS4", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SPDRCKCKKVKPTLATYLSK", "down_seq": "YSYVIHAKIKAVQRSGCNEV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn194", "evidence": [ { "id": "Q9JLS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "68", "end_pos": "68" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JLS4-1.240.240", "start_pos": 240, "end_pos": 240, "uniprot_canonical_ac": "Q9JLS4-1", "length": 348, "uniprot_id": "SFRP4_RAT", "protein_name": "Secreted frizzled-related protein 4", "refseq_ac": "NP_445996", "refseq_name": "secreted frizzled-related protein 4 precursor", "gene_name": "Sfrp4", "gene_names_uniprotkb": "Sfrp4; Ddc4; Frp", "gene_names_refseq": "Sfrp4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JLS4", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JLS4", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VKEIFKSSSPIPRTQVPLIT", "down_seq": "SSCQCPHILPHQDVLIMCYE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn240", "evidence": [ { "id": "Q9JLS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "68", "end_pos": "68" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JLS4-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "Q9JLS4-1", "length": 348, "uniprot_id": "SFRP4_RAT", "protein_name": "Secreted frizzled-related protein 4", "refseq_ac": "NP_445996", "refseq_name": "secreted frizzled-related protein 4 precursor", "gene_name": "Sfrp4", "gene_names_uniprotkb": "Sfrp4; Ddc4; Frp", "gene_names_refseq": "Sfrp4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JLS4", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JLS4", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GVRGAPCEAVRIPMCRHMPW", "down_seq": "ITRMPNHLHHSTQENAILAI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn38", "evidence": [ { "id": "Q9JLS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "68", "end_pos": "68" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JLS4-1.68.68", "start_pos": 68, "end_pos": 68, "uniprot_canonical_ac": "Q9JLS4-1", "length": 348, "uniprot_id": "SFRP4_RAT", "protein_name": "Secreted frizzled-related protein 4", "refseq_ac": "NP_445996", "refseq_name": "secreted frizzled-related protein 4 precursor", "gene_name": "Sfrp4", "gene_names_uniprotkb": "Sfrp4; Ddc4; Frp", "gene_names_refseq": "Sfrp4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JLS4", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JLS4", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HSTQENAILAIEQYEELVDV", "down_seq": "CSSVLRFFLCAMYAPICTLE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn68", "evidence": [ { "id": "Q9JLS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9JLS4#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "68", "end_pos": "68" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5EXX3-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "Q5EXX3-1", "length": 1203, "uniprot_id": "ZBT38_RAT", "protein_name": "Zinc finger and BTB domain-containing protein 38", "refseq_ac": "NP_001012489", "refseq_name": "zinc finger and BTB domain-containing protein 38", "gene_name": "Zbtb38", "gene_names_uniprotkb": "Zbtb38", "gene_names_refseq": "RGD1310136; Zbtb38", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5EXX3", "url": "https://www.uniprot.org/uniprotkb/Q5EXX3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5EXX3", "url": "https://www.uniprot.org/uniprotkb/Q5EXX3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGKRLGISFLEDLSDRNFSN", "down_seq": "PGPYVVCITEKGVVKEEKNE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5EXX3", "url": "https://www.uniprot.org/uniprotkb/Q5EXX3" } ], "site_lbl": "Ser130" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "130", "end_pos": "130" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08562-1.1350.1350", "start_pos": 1350, "end_pos": 1350, "uniprot_canonical_ac": "O08562-1", "length": 1984, "uniprot_id": "SCN9A_RAT", "protein_name": "Sodium channel protein type 9 subunit alpha", "refseq_ac": "NP_579823", "refseq_name": "sodium channel protein type 9 subunit alpha", "gene_name": "Scn9a", "gene_names_uniprotkb": "Scn9a", "gene_names_refseq": "Nav1.7; PN1; Scn2a; Scn9a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WLIFSIMGVNLFAGKFYECV", "down_seq": "TTDGSRFPTSQVANRSECFA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1350", "evidence": [ { "id": "O08562", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O08562#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1350", "end_pos": "1350" }, { "start_pos": "1364", "end_pos": "1364" }, { "start_pos": "1373", "end_pos": "1373" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "283", "end_pos": "283" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1488", "end_pos": "1488" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "O08562-1.1364.1364", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08562-1.1364.1364", "start_pos": 1364, "end_pos": 1364, "uniprot_canonical_ac": "O08562-1", "length": 1984, "uniprot_id": "SCN9A_RAT", "protein_name": "Sodium channel protein type 9 subunit alpha", "refseq_ac": "NP_579823", "refseq_name": "sodium channel protein type 9 subunit alpha", "gene_name": "Scn9a", "gene_names_uniprotkb": "Scn9a", "gene_names_refseq": "Nav1.7; PN1; Scn2a; Scn9a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KFYECVNTTDGSRFPTSQVA", "down_seq": "RSECFALMNVSGNVRWKNLK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1364", "evidence": [ { "id": "O08562", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O08562#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1350", "end_pos": "1350" }, { "start_pos": "1364", "end_pos": "1364" }, { "start_pos": "1373", "end_pos": "1373" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "283", "end_pos": "283" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1488", "end_pos": "1488" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O08562-1.1350.1350", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O08562-1.1373.1373", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08562-1.1373.1373", "start_pos": 1373, "end_pos": 1373, "uniprot_canonical_ac": "O08562-1", "length": 1984, "uniprot_id": "SCN9A_RAT", "protein_name": "Sodium channel protein type 9 subunit alpha", "refseq_ac": "NP_579823", "refseq_name": "sodium channel protein type 9 subunit alpha", "gene_name": "Scn9a", "gene_names_uniprotkb": "Scn9a", "gene_names_refseq": "Nav1.7; PN1; Scn2a; Scn9a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DGSRFPTSQVANRSECFALM", "down_seq": "VSGNVRWKNLKVNFDNVGLG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1373", "evidence": [ { "id": "O08562", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O08562#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1350", "end_pos": "1350" }, { "start_pos": "1364", "end_pos": "1364" }, { "start_pos": "1373", "end_pos": "1373" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "283", "end_pos": "283" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1488", "end_pos": "1488" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O08562-1.1364.1364", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08562-1.209.209", "start_pos": 209, "end_pos": 209, "uniprot_canonical_ac": "O08562-1", "length": 1984, "uniprot_id": "SCN9A_RAT", "protein_name": "Sodium channel protein type 9 subunit alpha", "refseq_ac": "NP_579823", "refseq_name": "sodium channel protein type 9 subunit alpha", "gene_name": "Scn9a", "gene_names_uniprotkb": "Scn9a", "gene_names_refseq": "Nav1.7; PN1; Scn2a; Scn9a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NWLDFVVIVFAYLTEFVNLG", "down_seq": "VSALRTFRVLRALKTISVIP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn209", "evidence": [ { "id": "O08562", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O08562#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1350", "end_pos": "1350" }, { "start_pos": "1364", "end_pos": "1364" }, { "start_pos": "1373", "end_pos": "1373" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "283", "end_pos": "283" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1488", "end_pos": "1488" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08562-1.283.283", "start_pos": 283, "end_pos": 283, "uniprot_canonical_ac": "O08562-1", "length": 1984, "uniprot_id": "SCN9A_RAT", "protein_name": "Sodium channel protein type 9 subunit alpha", "refseq_ac": "NP_579823", "refseq_name": "sodium channel protein type 9 subunit alpha", "gene_name": "Scn9a", "gene_names_uniprotkb": "Scn9a", "gene_names_refseq": "Nav1.7; PN1; Scn2a; Scn9a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GLQLFMGNLKHKCFRKELEE", "down_seq": "ETLESIMNTAESEEELKKYF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn283", "evidence": [ { "id": "O08562", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O08562#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1350", "end_pos": "1350" }, { "start_pos": "1364", "end_pos": "1364" }, { "start_pos": "1373", "end_pos": "1373" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "283", "end_pos": "283" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1488", "end_pos": "1488" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08562-1.1488.1488", "start_pos": 1488, "end_pos": 1488, "uniprot_canonical_ac": "O08562-1", "length": 1984, "uniprot_id": "SCN9A_RAT", "protein_name": "Sodium channel protein type 9 subunit alpha", "refseq_ac": "NP_579823", "refseq_name": "sodium channel protein type 9 subunit alpha", "gene_name": "Scn9a", "gene_names_uniprotkb": "Scn9a", "gene_names_refseq": "Nav1.7; PN1; Scn2a; Scn9a", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QDIFMTEEQKKYYNAMKKLG", "down_seq": "KKPQKPIPRPGNKFQGCIFD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "O08562", "url": "https://www.uniprot.org/uniprotkb/O08562" } ], "site_lbl": "Ser1488" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1350", "end_pos": "1350" }, { "start_pos": "1364", "end_pos": "1364" }, { "start_pos": "1373", "end_pos": "1373" }, { "start_pos": "209", "end_pos": "209" }, { "start_pos": "283", "end_pos": "283" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1488", "end_pos": "1488" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08625-1.136.136", "start_pos": 136, "end_pos": 136, "uniprot_canonical_ac": "O08625-1", "length": 523, "uniprot_id": "SYT10_RAT", "protein_name": "Synaptotagmin-10", "refseq_ac": "NP_113854", "refseq_name": "synaptotagmin-10", "gene_name": "Syt10", "gene_names_uniprotkb": "Syt10", "gene_names_refseq": "Syt10", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08625", "url": "https://www.uniprot.org/uniprotkb/O08625" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08625", "url": "https://www.uniprot.org/uniprotkb/O08625", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VEENEKPAPKAIEPAIKISH", "down_seq": "SPDIPAEVQTALKEHLIKHA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O08625", "url": "https://www.uniprot.org/uniprotkb/O08625" } ], "site_lbl": "Thr136" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "136", "end_pos": "136" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P08104-1.1317.1317", "start_pos": 1317, "end_pos": 1317, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WLIFSIMGVNLFAGKFYHCV", "down_seq": "TTTGNMFEIKEVNNFSDCQA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1317", "evidence": [ { "id": "P08104", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08104#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "P08104-1.1331.1331", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P08104-1.1331.1331", "start_pos": 1331, "end_pos": 1331, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KFYHCVNTTTGNMFEIKEVN", "down_seq": "FSDCQALGKQARWKNVKVNF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1331", "evidence": [ { "id": "P08104", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08104#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P08104-1.1317.1317", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P08104-1.211.211", "start_pos": 211, "end_pos": 211, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NWLDFSVIVMAYVTEFVDLG", "down_seq": "VSALRTFRVLRALKTISVIP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "P08104", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08104#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P08104-1.290.290", "start_pos": 290, "end_pos": 290, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "MGNLRNKCSQWPPSDSAFET", "down_seq": "TTSYFNGTMDSNGTFVNVTM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn290", "evidence": [ { "id": "P08104", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08104#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "P08104-1.296.296", "categories": [ "glycosylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P08104-1.302.302", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P08104-1.307.307", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P08104-1.296.296", "start_pos": 296, "end_pos": 296, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KCSQWPPSDSAFETNTTSYF", "down_seq": "GTMDSNGTFVNVTMSTFNWK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn296", "evidence": [ { "id": "P08104", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08104#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P08104-1.290.290", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P08104-1.302.302", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P08104-1.307.307", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P08104-1.302.302", "start_pos": 302, "end_pos": 302, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSDSAFETNTTSYFNGTMDS", "down_seq": "GTFVNVTMSTFNWKDYIADD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn302", "evidence": [ { "id": "P08104", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08104#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P08104-1.290.290", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P08104-1.296.296", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P08104-1.307.307", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P08104-1.307.307", "start_pos": 307, "end_pos": 307, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FETNTTSYFNGTMDSNGTFV", "down_seq": "VTMSTFNWKDYIADDSHFYV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn307", "evidence": [ { "id": "P08104", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08104#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P08104-1.290.290", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P08104-1.296.296", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P08104-1.302.302", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P08104-1.339.339", "start_pos": 339, "end_pos": 339, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IADDSHFYVLDGQKDPLLCG", "down_seq": "GSDAGQCPEGYICVKAGRNP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn339", "evidence": [ { "id": "P08104", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08104#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P08104-1.1503.1503", "start_pos": 1503, "end_pos": 1503, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Synergetic action of domain II and IV underlies persistent current generation in Nav1.3 as revealed by a tarantula toxin.", "journal": "Scientific reports", "date": "2015", "authors": "Tang C, Zhou X, Zhang Y, Xiao Z, Hu Z, Zhang C, Huang Y, Chen B, Liu Z, Liang S", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "reference": [ { "type": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] } ], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "IMILICLNMVTMMVETDDQS", "down_seq": "YMTLVLSRINLVFIVLFTGE", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "P", "comment": "6-fold decrease in activity of the spider RTX-VII toxin.", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P08104-1.1504.1504", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P08104-1.1505.1505", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P08104-1.1506.1506", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P08104-1.1507.1507", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08104-1.1504.1504", "start_pos": 1504, "end_pos": 1504, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Synergetic action of domain II and IV underlies persistent current generation in Nav1.3 as revealed by a tarantula toxin.", "journal": "Scientific reports", "date": "2015", "authors": "Tang C, Zhou X, Zhang Y, Xiao Z, Hu Z, Zhang C, Huang Y, Chen B, Liu Z, Liang S", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "reference": [ { "type": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] } ], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MILICLNMVTMMVETDDQSK", "down_seq": "MTLVLSRINLVFIVLFTGEF", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "E", "comment": "2-fold decrease in activity of the spider RTX-VII toxin.", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P08104-1.1503.1503", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P08104-1.1505.1505", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P08104-1.1506.1506", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P08104-1.1507.1507", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08104-1.1505.1505", "start_pos": 1505, "end_pos": 1505, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Synergetic action of domain II and IV underlies persistent current generation in Nav1.3 as revealed by a tarantula toxin.", "journal": "Scientific reports", "date": "2015", "authors": "Tang C, Zhou X, Zhang Y, Xiao Z, Hu Z, Zhang C, Huang Y, Chen B, Liu Z, Liang S", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "reference": [ { "type": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] } ], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "ILICLNMVTMMVETDDQSKY", "down_seq": "TLVLSRINLVFIVLFTGEFL", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "K", "comment": "4.5-fold decrease in activity of the spider RTX-VII toxin.", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P08104-1.1503.1503", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P08104-1.1504.1504", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P08104-1.1506.1506", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P08104-1.1507.1507", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08104-1.1506.1506", "start_pos": 1506, "end_pos": 1506, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Synergetic action of domain II and IV underlies persistent current generation in Nav1.3 as revealed by a tarantula toxin.", "journal": "Scientific reports", "date": "2015", "authors": "Tang C, Zhou X, Zhang Y, Xiao Z, Hu Z, Zhang C, Huang Y, Chen B, Liu Z, Liang S", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "reference": [ { "type": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] } ], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LICLNMVTMMVETDDQSKYM", "down_seq": "LVLSRINLVFIVLFTGEFLL", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "I", "comment": "10-fold decrease in activity of the spider RTX-VII toxin.", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P08104-1.1503.1503", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P08104-1.1504.1504", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P08104-1.1505.1505", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P08104-1.1507.1507", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08104-1.1507.1507", "start_pos": 1507, "end_pos": 1507, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Synergetic action of domain II and IV underlies persistent current generation in Nav1.3 as revealed by a tarantula toxin.", "journal": "Scientific reports", "date": "2015", "authors": "Tang C, Zhou X, Zhang Y, Xiao Z, Hu Z, Zhang C, Huang Y, Chen B, Liu Z, Liang S", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "reference": [ { "type": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] } ], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "ICLNMVTMMVETDDQSKYMT", "down_seq": "VLSRINLVFIVLFTGEFLLK", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "N", "comment": "12-fold decrease in activity of the spider RTX-VII toxin.", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P08104-1.1503.1503", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P08104-1.1504.1504", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P08104-1.1505.1505", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P08104-1.1506.1506", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08104-1.1559.1559", "start_pos": 1559, "end_pos": 1559, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Molecular determination of selectivity of the site 3 modulator (BmK I) to sodium channels in the CNS: a clue to the importance of Nav1.6 in BmK I-induced neuronal hyperexcitability.", "journal": "The Biochemical journal", "date": "2010", "authors": "He H, Liu Z, Dong B, Zhou J, Zhu H, Ji Y", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "reference": [ { "type": "PubMed", "id": "20678086", "url": "https://glygen.org/publication/PubMed/20678086" } ] } ], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20678086", "url": "https://glygen.org/publication/PubMed/20678086", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "GWNIFDFVVVILSIVGMFLA", "down_seq": "LIEKYFVSPTLFRVIRLARI", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "D", "comment": "Increase in sensitivity to the scorpion toxin BMKM1.", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "PubMed", "id": "20678086", "url": "https://glygen.org/publication/PubMed/20678086" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P08104-1.1562.1562", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08104-1.1562.1562", "start_pos": 1562, "end_pos": 1562, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Synergetic action of domain II and IV underlies persistent current generation in Nav1.3 as revealed by a tarantula toxin.", "journal": "Scientific reports", "date": "2015", "authors": "Tang C, Zhou X, Zhang Y, Xiao Z, Hu Z, Zhang C, Huang Y, Chen B, Liu Z, Liang S", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "reference": [ { "type": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] } ], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "IFDFVVVILSIVGMFLAELI", "down_seq": "KYFVSPTLFRVIRLARIGRI", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "Q", "comment": "5.5-fold decrease in activity of the spider RTX-VII toxin.", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] }, { "sequence_org": "E", "sequence_mut": "R", "comment": "20-fold decrease in activity of the spider RTX-VII toxin.", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "PubMed", "id": "25784299", "url": "https://glygen.org/publication/PubMed/25784299" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P08104-1.1559.1559", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08104-1.1452.1452", "start_pos": 1452, "end_pos": 1452, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QDIFMTEEQKKYYNAMKKLG", "down_seq": "KKPQKPIPRPANKFQGMVFD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "site_lbl": "Ser1452" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P08104-1.484.484", "start_pos": 484, "end_pos": 484, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "iPTMnet", "id": "P08104", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08104" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08104", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08104", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AASAASRDFSGIGGLGELLE", "down_seq": "SSEASKLSSKSAKEWRNRRK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P08104", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08104" } ], "site_lbl": "Ser484" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P08104-1.485.485", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P08104-1.486.486", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08104-1.485.485", "start_pos": 485, "end_pos": 485, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "iPTMnet", "id": "P08104", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08104" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08104", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08104", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASAASRDFSGIGGLGELLES", "down_seq": "SEASKLSSKSAKEWRNRRKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P08104", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08104" } ], "site_lbl": "Ser485" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P08104-1.484.484", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P08104-1.486.486", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P08104-1.486.486", "start_pos": 486, "end_pos": 486, "uniprot_canonical_ac": "P08104-1", "length": 1951, "uniprot_id": "SCN3A_RAT", "protein_name": "Sodium channel protein type 3 subunit alpha", "refseq_ac": "", "refseq_name": "", "gene_name": "Scn3a", "gene_names_uniprotkb": "Scn3a", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "iPTMnet", "id": "P08104", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08104" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P08104", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08104", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SAASRDFSGIGGLGELLESS", "down_seq": "EASKLSSKSAKEWRNRRKKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08104", "url": "https://www.uniprot.org/uniprotkb/P08104" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P08104", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08104" } ], "site_lbl": "Ser486" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1317", "end_pos": "1317" }, { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "211", "end_pos": "211" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "302", "end_pos": "302" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "339", "end_pos": "339" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1503", "end_pos": "1503" }, { "start_pos": "1504", "end_pos": "1504" }, { "start_pos": "1505", "end_pos": "1505" }, { "start_pos": "1506", "end_pos": "1506" }, { "start_pos": "1507", "end_pos": "1507" }, { "start_pos": "1559", "end_pos": "1559" }, { "start_pos": "1562", "end_pos": "1562" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1452", "end_pos": "1452" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "486", "end_pos": "486" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P08104-1.484.484", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P08104-1.485.485", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.103.103", "start_pos": 103, "end_pos": 103, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "journal": "Journal of neurochemistry", "date": "1999", "authors": "Cole RN, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] }, { "title": "O-linked beta-N-acetylglucosamine (O-GlcNAc) site thr-87 regulates synapsin I localization to synapses and size of the reserve pool of synaptic vesicles.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Skorobogatko Y, Landicho A, Chalkley RJ, Kossenkov AV, Gallo G, Vosseller K", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219" } ] }, { "title": "Synaptic protein changes after a chronic period of sensorimotor perturbation in adult rats: a potential role of phosphorylation/O-GlcNAcylation interplay.", "journal": "Journal of neurochemistry", "date": "2018", "authors": "Fourneau J, Canu MH, Cieniewski-Bernard C, Bastide B, Dupont E", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487" } ] }, { "title": "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "journal": "Molecular & cellular proteomics : MCP", "date": "2002", "authors": "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" } ], "reference": [ { "type": "PubMed", "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "crossref": [ { "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AVKQTTAAAAATFSEQVGGG", "down_seq": "GGAGRGGAAARVLLVIDEPH", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser103", "evidence": [ { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "P09951", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "24280219", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24280219" }, { "id": "29808487", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29808487" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "P09951", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P09951" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser103", "evidence": [ { "id": "P09951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P09951-1.87.87", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P09951-1.96.96", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.261.261", "start_pos": 261, "end_pos": 261, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "journal": "Journal of neurochemistry", "date": "1999", "authors": "Cole RN, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] }, { "title": "O-linked beta-N-acetylglucosamine (O-GlcNAc) site thr-87 regulates synapsin I localization to synapses and size of the reserve pool of synaptic vesicles.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Skorobogatko Y, Landicho A, Chalkley RJ, Kossenkov AV, Gallo G, Vosseller K", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219" } ] }, { "title": "Synaptic protein changes after a chronic period of sensorimotor perturbation in adult rats: a potential role of phosphorylation/O-GlcNAcylation interplay.", "journal": "Journal of neurochemistry", "date": "2018", "authors": "Fourneau J, Canu MH, Cieniewski-Bernard C, Bastide B, Dupont E", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487" } ] }, { "title": "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "journal": "Molecular & cellular proteomics : MCP", "date": "2002", "authors": "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" } ], "reference": [ { "type": "PubMed", "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "crossref": [ { "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TEEFPLIDQTFYPNHKEMLS", "down_seq": "TTYPVVVKMGHAHSGMGKVK", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser261", "evidence": [ { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "P09951", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "24280219", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24280219" }, { "id": "29808487", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29808487" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "P09951", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P09951" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser261", "evidence": [ { "id": "P09951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.430.430", "start_pos": 430, "end_pos": 430, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "journal": "Journal of neurochemistry", "date": "1999", "authors": "Cole RN, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] }, { "title": "O-linked beta-N-acetylglucosamine (O-GlcNAc) site thr-87 regulates synapsin I localization to synapses and size of the reserve pool of synaptic vesicles.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Skorobogatko Y, Landicho A, Chalkley RJ, Kossenkov AV, Gallo G, Vosseller K", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219" } ] }, { "title": "Synaptic protein changes after a chronic period of sensorimotor perturbation in adult rats: a potential role of phosphorylation/O-GlcNAcylation interplay.", "journal": "Journal of neurochemistry", "date": "2018", "authors": "Fourneau J, Canu MH, Cieniewski-Bernard C, Bastide B, Dupont E", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487" } ] }, { "title": "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "journal": "Molecular & cellular proteomics : MCP", "date": "2002", "authors": "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" } ], "reference": [ { "type": "PubMed", "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "crossref": [ { "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VVNKMTQALPRQRDASPGRG", "down_seq": "HSQTPSPGALPLGRQTSQQP", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser430", "evidence": [ { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "P09951", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "24280219", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24280219" }, { "id": "29808487", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29808487" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "P09951", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P09951" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser430", "evidence": [ { "id": "P09951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; alternate", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "site_lbl": "Ser430" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P09951-1.425.425", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P09951-1.432.432", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P09951-1.434.434", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P09951-1.436.436", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TDLQRPQPPPPPPSAASPGA", "down_seq": "PGSAAASAERASTAAPVASP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr43", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P09951-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P09951-1.55.55", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P09951-1.56.56", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P09951-1.62.62", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09951-1.510.510", "start_pos": 510, "end_pos": 510, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HLSGLGPPAGSPLPQRLPSP", "down_seq": "AAPQQSASQATPMTQGQGRQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr510", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "P09951-1.516.516", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P09951-1.524.524", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09951-1.516.516", "start_pos": 516, "end_pos": 516, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "journal": "Journal of neurochemistry", "date": "1999", "authors": "Cole RN, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] }, { "title": "O-linked beta-N-acetylglucosamine (O-GlcNAc) site thr-87 regulates synapsin I localization to synapses and size of the reserve pool of synaptic vesicles.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Skorobogatko Y, Landicho A, Chalkley RJ, Kossenkov AV, Gallo G, Vosseller K", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219" } ] }, { "title": "Synaptic protein changes after a chronic period of sensorimotor perturbation in adult rats: a potential role of phosphorylation/O-GlcNAcylation interplay.", "journal": "Journal of neurochemistry", "date": "2018", "authors": "Fourneau J, Canu MH, Cieniewski-Bernard C, Bastide B, Dupont E", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487" } ] }, { "title": "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "journal": "Molecular & cellular proteomics : MCP", "date": "2002", "authors": "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" } ], "reference": [ { "type": "PubMed", "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "crossref": [ { "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPAGSPLPQRLPSPTAAPQQ", "down_seq": "ASQATPMTQGQGRQSRPVAG", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser516", "evidence": [ { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "P09951", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "24280219", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24280219" }, { "id": "29808487", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29808487" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "P09951", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P09951" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser516", "evidence": [ { "id": "P09951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ], "site_lbl": "Ser516" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P09951-1.510.510", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P09951-1.524.524", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.524.524", "start_pos": 524, "end_pos": 524, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "journal": "Journal of neurochemistry", "date": "1999", "authors": "Cole RN, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] }, { "title": "O-linked beta-N-acetylglucosamine (O-GlcNAc) site thr-87 regulates synapsin I localization to synapses and size of the reserve pool of synaptic vesicles.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Skorobogatko Y, Landicho A, Chalkley RJ, Kossenkov AV, Gallo G, Vosseller K", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219" } ] }, { "title": "Synaptic protein changes after a chronic period of sensorimotor perturbation in adult rats: a potential role of phosphorylation/O-GlcNAcylation interplay.", "journal": "Journal of neurochemistry", "date": "2018", "authors": "Fourneau J, Canu MH, Cieniewski-Bernard C, Bastide B, Dupont E", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487" } ] }, { "title": "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "journal": "Molecular & cellular proteomics : MCP", "date": "2002", "authors": "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" } ], "reference": [ { "type": "PubMed", "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "crossref": [ { "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QRLPSPTAAPQQSASQATPM", "down_seq": "QGQGRQSRPVAGGPGAPPAA", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr524", "evidence": [ { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "P09951", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "24280219", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24280219" }, { "id": "29808487", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29808487" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "P09951", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P09951" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr524", "evidence": [ { "id": "P09951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ], "site_lbl": "Thr524" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P09951-1.510.510", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P09951-1.516.516", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "journal": "Journal of neurochemistry", "date": "1999", "authors": "Cole RN, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] }, { "title": "O-linked beta-N-acetylglucosamine (O-GlcNAc) site thr-87 regulates synapsin I localization to synapses and size of the reserve pool of synaptic vesicles.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Skorobogatko Y, Landicho A, Chalkley RJ, Kossenkov AV, Gallo G, Vosseller K", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219" } ] }, { "title": "Synaptic protein changes after a chronic period of sensorimotor perturbation in adult rats: a potential role of phosphorylation/O-GlcNAcylation interplay.", "journal": "Journal of neurochemistry", "date": "2018", "authors": "Fourneau J, Canu MH, Cieniewski-Bernard C, Bastide B, Dupont E", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487" } ] }, { "title": "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "journal": "Molecular & cellular proteomics : MCP", "date": "2002", "authors": "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" } ], "reference": [ { "type": "PubMed", "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "crossref": [ { "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSAASPGATPGSAAASAERA", "down_seq": "TAAPVASPAAPSPGSSGGGG", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser55", "evidence": [ { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "P09951", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "24280219", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24280219" }, { "id": "29808487", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29808487" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "P09951", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P09951" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser55", "evidence": [ { "id": "P09951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ], "site_lbl": "Ser55" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P09951-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P09951-1.43.43", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P09951-1.56.56", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P09951-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P09951-1.67.67", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.562.562", "start_pos": 562, "end_pos": 562, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "journal": "Journal of neurochemistry", "date": "1999", "authors": "Cole RN, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] }, { "title": "O-linked beta-N-acetylglucosamine (O-GlcNAc) site thr-87 regulates synapsin I localization to synapses and size of the reserve pool of synaptic vesicles.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Skorobogatko Y, Landicho A, Chalkley RJ, Kossenkov AV, Gallo G, Vosseller K", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219" } ] }, { "title": "Synaptic protein changes after a chronic period of sensorimotor perturbation in adult rats: a potential role of phosphorylation/O-GlcNAcylation interplay.", "journal": "Journal of neurochemistry", "date": "2018", "authors": "Fourneau J, Canu MH, Cieniewski-Bernard C, Bastide B, Dupont E", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487" } ] }, { "title": "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "journal": "Molecular & cellular proteomics : MCP", "date": "2002", "authors": "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" } ], "reference": [ { "type": "PubMed", "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "crossref": [ { "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PAARPPASPSPQRQAGPPQA", "down_seq": "RQASISGPAPPKVSGASPGG", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr562", "evidence": [ { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "P09951", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "24280219", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24280219" }, { "id": "29808487", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29808487" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "P09951", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P09951" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr562", "evidence": [ { "id": "P09951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ], "site_lbl": "Thr562" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P09951-1.549.549", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P09951-1.551.551", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P09951-1.566.566", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P09951-1.576.576", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "journal": "Journal of neurochemistry", "date": "1999", "authors": "Cole RN, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] }, { "title": "O-linked beta-N-acetylglucosamine (O-GlcNAc) site thr-87 regulates synapsin I localization to synapses and size of the reserve pool of synaptic vesicles.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Skorobogatko Y, Landicho A, Chalkley RJ, Kossenkov AV, Gallo G, Vosseller K", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219" } ] }, { "title": "Synaptic protein changes after a chronic period of sensorimotor perturbation in adult rats: a potential role of phosphorylation/O-GlcNAcylation interplay.", "journal": "Journal of neurochemistry", "date": "2018", "authors": "Fourneau J, Canu MH, Cieniewski-Bernard C, Bastide B, Dupont E", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487" } ] }, { "title": "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "journal": "Molecular & cellular proteomics : MCP", "date": "2002", "authors": "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" } ], "reference": [ { "type": "PubMed", "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "crossref": [ { "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SAASPGATPGSAAASAERAS", "down_seq": "AAPVASPAAPSPGSSGGGGF", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr56", "evidence": [ { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "P09951", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "24280219", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24280219" }, { "id": "29808487", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29808487" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "P09951", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P09951" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr56", "evidence": [ { "id": "P09951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ], "site_lbl": "Thr56" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P09951-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P09951-1.43.43", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P09951-1.55.55", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P09951-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P09951-1.67.67", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.576.576", "start_pos": 576, "end_pos": 576, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "journal": "Journal of neurochemistry", "date": "1999", "authors": "Cole RN, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] }, { "title": "O-linked beta-N-acetylglucosamine (O-GlcNAc) site thr-87 regulates synapsin I localization to synapses and size of the reserve pool of synaptic vesicles.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Skorobogatko Y, Landicho A, Chalkley RJ, Kossenkov AV, Gallo G, Vosseller K", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219" } ] }, { "title": "Synaptic protein changes after a chronic period of sensorimotor perturbation in adult rats: a potential role of phosphorylation/O-GlcNAcylation interplay.", "journal": "Journal of neurochemistry", "date": "2018", "authors": "Fourneau J, Canu MH, Cieniewski-Bernard C, Bastide B, Dupont E", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487" } ] }, { "title": "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "journal": "Molecular & cellular proteomics : MCP", "date": "2002", "authors": "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" } ], "reference": [ { "type": "PubMed", "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "crossref": [ { "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGPPQATRQASISGPAPPKV", "down_seq": "GASPGGQQRQGPPQKPPGPA", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser576", "evidence": [ { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "P09951", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "24280219", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24280219" }, { "id": "29808487", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29808487" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "P09951", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P09951" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser576", "evidence": [ { "id": "P09951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ], "site_lbl": "Ser576" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P09951-1.562.562", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P09951-1.566.566", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "journal": "Journal of neurochemistry", "date": "1999", "authors": "Cole RN, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] }, { "title": "O-linked beta-N-acetylglucosamine (O-GlcNAc) site thr-87 regulates synapsin I localization to synapses and size of the reserve pool of synaptic vesicles.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Skorobogatko Y, Landicho A, Chalkley RJ, Kossenkov AV, Gallo G, Vosseller K", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219" } ] }, { "title": "Synaptic protein changes after a chronic period of sensorimotor perturbation in adult rats: a potential role of phosphorylation/O-GlcNAcylation interplay.", "journal": "Journal of neurochemistry", "date": "2018", "authors": "Fourneau J, Canu MH, Cieniewski-Bernard C, Bastide B, Dupont E", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487" } ] }, { "title": "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "journal": "Molecular & cellular proteomics : MCP", "date": "2002", "authors": "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" } ], "reference": [ { "type": "PubMed", "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "crossref": [ { "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SPGSSGGGGFFSSLSNAVKQ", "down_seq": "TAAAAATFSEQVGGGSGGAG", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr87", "evidence": [ { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "P09951", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "24280219", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24280219" }, { "id": "29808487", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29808487" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "P09951", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P09951" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr87", "evidence": [ { "id": "P09951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "24280219", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24280219" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ], "site_lbl": "Thr87" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P09951-1.67.67", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P09951-1.96.96", "categories": [ "glycosylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P09951-1.103.103", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.96.96", "start_pos": 96, "end_pos": 96, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "journal": "Journal of neurochemistry", "date": "1999", "authors": "Cole RN, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Quantification of O-glycosylation stoichiometry and dynamics using resolvable mass tags.", "journal": "Nature chemical biology", "date": "2010", "authors": "Rexach JE, Rogers CJ, Yu SH, Tao J, Sun YE, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584" } ] }, { "title": "O-linked beta-N-acetylglucosamine (O-GlcNAc) site thr-87 regulates synapsin I localization to synapses and size of the reserve pool of synaptic vesicles.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Skorobogatko Y, Landicho A, Chalkley RJ, Kossenkov AV, Gallo G, Vosseller K", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219" } ] }, { "title": "Synaptic protein changes after a chronic period of sensorimotor perturbation in adult rats: a potential role of phosphorylation/O-GlcNAcylation interplay.", "journal": "Journal of neurochemistry", "date": "2018", "authors": "Fourneau J, Canu MH, Cieniewski-Bernard C, Bastide B, Dupont E", "evidence": [ { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" } ], "reference": [ { "type": "PubMed", "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487" } ] }, { "title": "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "journal": "Molecular & cellular proteomics : MCP", "date": "2002", "authors": "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "O-GlcNAc Database", "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "database": "O-GlcNAc Atlas", "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951" } ], "reference": [ { "type": "PubMed", "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "crossref": [ { "id": "10386995", "url": "https://glygen.org/publication/PubMed/10386995", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20657584", "url": "https://glygen.org/publication/PubMed/20657584", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24280219", "url": "https://glygen.org/publication/PubMed/24280219", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29808487", "url": "https://glygen.org/publication/PubMed/29808487", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12438562", "url": "https://glygen.org/publication/PubMed/12438562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://oglcnac.org/atlas/detail/P09951", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FFSSLSNAVKQTTAAAAATF", "down_seq": "EQVGGGSGGAGRGGAAARVL", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser96", "evidence": [ { "id": "10386995", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10386995" }, { "id": "P09951", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P09951" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "20657584", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/20657584" }, { "id": "24280219", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24280219" }, { "id": "29808487", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/29808487" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" }, { "id": "P09951", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P09951" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser96", "evidence": [ { "id": "P09951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09951#ptm_processing" }, { "id": "12438562", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/12438562" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P09951-1.87.87", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P09951-1.103.103", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.312.312", "start_pos": 312, "end_pos": 312, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ASVVALTKTYATAEPFIDAK", "down_seq": "DVRVQKIGQNYKAYMRTSVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "site_lbl": "Tyr312" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09951-1.39.39", "start_pos": 39, "end_pos": 39, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NGYMTDLQRPQPPPPPPSAA", "down_seq": "PGATPGSAAASAERASTAAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "site_lbl": "Ser39" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P09951-1.43.43", "categories": [ "glycosylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P09951-1.55.55", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P09951-1.56.56", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.425.425", "start_pos": 425, "end_pos": 425, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LIVELVVNKMTQALPRQRDA", "down_seq": "PGRGSHSQTPSPGALPLGRQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "site_lbl": "Ser425" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P09951-1.430.430", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P09951-1.432.432", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P09951-1.434.434", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P09951-1.436.436", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.432.432", "start_pos": 432, "end_pos": 432, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NKMTQALPRQRDASPGRGSH", "down_seq": "QTPSPGALPLGRQTSQQPAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "site_lbl": "Ser432" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P09951-1.425.425", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P09951-1.430.430", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P09951-1.434.434", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P09951-1.436.436", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09951-1.434.434", "start_pos": 434, "end_pos": 434, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MTQALPRQRDASPGRGSHSQ", "down_seq": "PSPGALPLGRQTSQQPAGPP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "site_lbl": "Thr434" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P09951-1.425.425", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P09951-1.430.430", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P09951-1.432.432", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P09951-1.436.436", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.436.436", "start_pos": 436, "end_pos": 436, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QALPRQRDASPGRGSHSQTP", "down_seq": "PGALPLGRQTSQQPAGPPAQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "site_lbl": "Ser436" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P09951-1.425.425", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P09951-1.430.430", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P09951-1.432.432", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P09951-1.434.434", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.549.549", "start_pos": 549, "end_pos": 549, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Effects of estrogen on synapsin I distribution in developing hypothalamic neurons.", "journal": "Neuroscience research", "date": "2010", "authors": "Ohtani-Kaneko R, Iwafuchi M, Iwakura T, Muraoka D, Yokosuka M, Shiga T, Watanabe C", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "19896987", "url": "https://glygen.org/publication/PubMed/19896987" } ] }, { "title": "Neurotrophins stimulate phosphorylation of synapsin I by MAP kinase and regulate synapsin I-actin interactions.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1996", "authors": "Jovanovic JN, Benfenati F, Siow YL, Sihra TS, Sanghera JS, Pelech SL, Greengard P, Czernik AJ", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "8622996", "url": "https://glygen.org/publication/PubMed/8622996" } ] } ], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19896987", "url": "https://glygen.org/publication/PubMed/19896987", "database": "PubMed", "categories": [ "Other" ] }, { "id": "8622996", "url": "https://glygen.org/publication/PubMed/8622996", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RQSRPVAGGPGAPPAARPPA", "down_seq": "PSPQRQAGPPQATRQASISG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "19896987", "url": "https://glygen.org/publication/PubMed/19896987" }, { "database": "PubMed", "id": "8622996", "url": "https://glygen.org/publication/PubMed/8622996" } ], "site_lbl": "Ser549" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P09951-1.551.551", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P09951-1.562.562", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P09951-1.566.566", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.551.551", "start_pos": 551, "end_pos": 551, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRPVAGGPGAPPAARPPASP", "down_seq": "PQRQAGPPQATRQASISGPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PDPK1", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "site_lbl": "Ser551" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P09951-1.549.549", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P09951-1.562.562", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P09951-1.566.566", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09951-1.566.566", "start_pos": 566, "end_pos": 566, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] }, { "title": "Amino acid sequences surrounding the cAMP-dependent and calcium/calmodulin-dependent phosphorylation sites in rat and bovine synapsin I.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1987", "authors": "Czernik AJ, Pang DT, Greengard P", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "3118371", "url": "https://glygen.org/publication/PubMed/3118371" } ] } ], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "3118371", "url": "https://glygen.org/publication/PubMed/3118371", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPASPSPQRQAGPPQATRQA", "down_seq": "ISGPAPPKVSGASPGGQQRQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CaMK2", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "3118371", "url": "https://glygen.org/publication/PubMed/3118371" } ], "site_lbl": "Ser566" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P09951-1.549.549", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P09951-1.551.551", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P09951-1.562.562", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P09951-1.576.576", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.603.603", "start_pos": 603, "end_pos": 603, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Synapsin I is phosphorylated at Ser603 by p21-activated kinases (PAKs) in vitro and in PC12 cells stimulated with bradykinin.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Sakurada K, Kato H, Nagumo H, Hiraoka H, Furuya K, Ikuhara T, Yamakita Y, Fukunaga K, Miyamoto E, Matsumura F, Matsuo YI, Naito Y, Sasaki Y", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "12237306", "url": "https://glygen.org/publication/PubMed/12237306" } ] }, { "title": "In vitro effects of bisphenol A on developing hypothalamic neurons.", "journal": "Toxicology", "date": "2010", "authors": "Iwakura T, Iwafuchi M, Muraoka D, Yokosuka M, Shiga T, Watanabe C, Ohtani-Kaneko R", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "20399245", "url": "https://glygen.org/publication/PubMed/20399245" } ] }, { "title": "The disturbance of hippocampal CaMKII/PKA/PKC phosphorylation in early experimental diabetes mellitus.", "journal": "CNS neuroscience & therapeutics", "date": "2013", "authors": "Liao MH, Xiang YC, Huang JY, Tao RR, Tian Y, Ye WF, Zhang GS, Lu YM, Ahmed MM, Liu ZR, Fukunaga K, Han F", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "23490331", "url": "https://glygen.org/publication/PubMed/23490331" } ] }, { "title": "Amino acid sequences surrounding the cAMP-dependent and calcium/calmodulin-dependent phosphorylation sites in rat and bovine synapsin I.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1987", "authors": "Czernik AJ, Pang DT, Greengard P", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "3118371", "url": "https://glygen.org/publication/PubMed/3118371" } ] } ], "crossref": [ { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "12237306", "url": "https://glygen.org/publication/PubMed/12237306", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20399245", "url": "https://glygen.org/publication/PubMed/20399245", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23490331", "url": "https://glygen.org/publication/PubMed/23490331", "database": "PubMed", "categories": [ "Other" ] }, { "id": "3118371", "url": "https://glygen.org/publication/PubMed/3118371", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQRQGPPQKPPGPAGPIRQA", "down_seq": "QAGPGPRTGPPTTQQPRPSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "P35465-1", "kinase_gene_name": "Pak1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "12237306", "url": "https://glygen.org/publication/PubMed/12237306" } ], "site_lbl": "Ser603" }, { "kinase_uniprot_canonical_ac": "Q62829-1", "kinase_gene_name": "Pak3", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "12237306", "url": "https://glygen.org/publication/PubMed/12237306" } ], "site_lbl": "Ser603" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CaMK2", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "12237306", "url": "https://glygen.org/publication/PubMed/12237306" }, { "database": "PubMed", "id": "20399245", "url": "https://glygen.org/publication/PubMed/20399245" }, { "database": "PubMed", "id": "23490331", "url": "https://glygen.org/publication/PubMed/23490331" }, { "database": "PubMed", "id": "3118371", "url": "https://glygen.org/publication/PubMed/3118371" } ], "site_lbl": "Ser603" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.62.62", "start_pos": 62, "end_pos": 62, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] }, { "title": "Administration of the calcineurin inhibitor cyclosporine modulates cocaine-induced locomotor activity in rats.", "journal": "Psychopharmacology", "date": "2008", "authors": "Addy NA, Bahi A, Taylor JR, Picciotto MR", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "18587562", "url": "https://glygen.org/publication/PubMed/18587562" } ] }, { "title": "Effects of estrogen on synapsin I distribution in developing hypothalamic neurons.", "journal": "Neuroscience research", "date": "2010", "authors": "Ohtani-Kaneko R, Iwafuchi M, Iwakura T, Muraoka D, Yokosuka M, Shiga T, Watanabe C", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "19896987", "url": "https://glygen.org/publication/PubMed/19896987" } ] }, { "title": "Vagal afferent NMDA receptors modulate CCK-induced reduction of food intake through synapsin I phosphorylation in adult male rats.", "journal": "Endocrinology", "date": "2013", "authors": "Campos CA, Shiina H, Silvas M, Page S, Ritter RC", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "23715865", "url": "https://glygen.org/publication/PubMed/23715865" } ] }, { "title": "Neurotrophins stimulate phosphorylation of synapsin I by MAP kinase and regulate synapsin I-actin interactions.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1996", "authors": "Jovanovic JN, Benfenati F, Siow YL, Sihra TS, Sanghera JS, Pelech SL, Greengard P, Czernik AJ", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "8622996", "url": "https://glygen.org/publication/PubMed/8622996" } ] } ], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18587562", "url": "https://glygen.org/publication/PubMed/18587562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19896987", "url": "https://glygen.org/publication/PubMed/19896987", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23715865", "url": "https://glygen.org/publication/PubMed/23715865", "database": "PubMed", "categories": [ "Other" ] }, { "id": "8622996", "url": "https://glygen.org/publication/PubMed/8622996", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATPGSAAASAERASTAAPVA", "down_seq": "PAAPSPGSSGGGGFFSSLSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "18587562", "url": "https://glygen.org/publication/PubMed/18587562" }, { "database": "PubMed", "id": "19896987", "url": "https://glygen.org/publication/PubMed/19896987" }, { "database": "PubMed", "id": "23715865", "url": "https://glygen.org/publication/PubMed/23715865" }, { "database": "PubMed", "id": "8622996", "url": "https://glygen.org/publication/PubMed/8622996" } ], "site_lbl": "Ser62" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P09951-1.43.43", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P09951-1.55.55", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P09951-1.56.56", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P09951-1.67.67", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.662.662", "start_pos": 662, "end_pos": 662, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DVPPPIIAAAGGPPHPQLNK", "down_seq": "QSLTNAFNLPEPAPPRPSLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "site_lbl": "Ser662" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P09951-1.664.664", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P09951-1.682.682", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09951-1.664.664", "start_pos": 664, "end_pos": 664, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPPIIAAAGGPPHPQLNKSQ", "down_seq": "LTNAFNLPEPAPPRPSLSQD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "site_lbl": "Ser664" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P09951-1.662.662", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P09951-1.682.682", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.67.67", "start_pos": 67, "end_pos": 67, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] }, { "title": "Administration of the calcineurin inhibitor cyclosporine modulates cocaine-induced locomotor activity in rats.", "journal": "Psychopharmacology", "date": "2008", "authors": "Addy NA, Bahi A, Taylor JR, Picciotto MR", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "18587562", "url": "https://glygen.org/publication/PubMed/18587562" } ] }, { "title": "Effects of estrogen on synapsin I distribution in developing hypothalamic neurons.", "journal": "Neuroscience research", "date": "2010", "authors": "Ohtani-Kaneko R, Iwafuchi M, Iwakura T, Muraoka D, Yokosuka M, Shiga T, Watanabe C", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "19896987", "url": "https://glygen.org/publication/PubMed/19896987" } ] }, { "title": "Vagal afferent NMDA receptors modulate CCK-induced reduction of food intake through synapsin I phosphorylation in adult male rats.", "journal": "Endocrinology", "date": "2013", "authors": "Campos CA, Shiina H, Silvas M, Page S, Ritter RC", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "23715865", "url": "https://glygen.org/publication/PubMed/23715865" } ] }, { "title": "Neurotrophins stimulate phosphorylation of synapsin I by MAP kinase and regulate synapsin I-actin interactions.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1996", "authors": "Jovanovic JN, Benfenati F, Siow YL, Sihra TS, Sanghera JS, Pelech SL, Greengard P, Czernik AJ", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "8622996", "url": "https://glygen.org/publication/PubMed/8622996" } ] } ], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18587562", "url": "https://glygen.org/publication/PubMed/18587562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19896987", "url": "https://glygen.org/publication/PubMed/19896987", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23715865", "url": "https://glygen.org/publication/PubMed/23715865", "database": "PubMed", "categories": [ "Other" ] }, { "id": "8622996", "url": "https://glygen.org/publication/PubMed/8622996", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAASAERASTAAPVASPAAP", "down_seq": "PGSSGGGGFFSSLSNAVKQT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "18587562", "url": "https://glygen.org/publication/PubMed/18587562" }, { "database": "PubMed", "id": "19896987", "url": "https://glygen.org/publication/PubMed/19896987" }, { "database": "PubMed", "id": "23715865", "url": "https://glygen.org/publication/PubMed/23715865" }, { "database": "PubMed", "id": "8622996", "url": "https://glygen.org/publication/PubMed/8622996" } ], "site_lbl": "Ser67" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P09951-1.55.55", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P09951-1.56.56", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P09951-1.62.62", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P09951-1.87.87", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P09951-1.682.682", "start_pos": 682, "end_pos": 682, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SQSLTNAFNLPEPAPPRPSL", "down_seq": "QDEVKAETIRSLRKSFASLF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "site_lbl": "Ser682" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P09951-1.662.662", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "P09951-1.664.664", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P09951-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "P09951-1", "length": 704, "uniprot_id": "SYN1_RAT", "protein_name": "Synapsin-1", "refseq_ac": "NP_001104252", "refseq_name": "synapsin-1 isoform b", "gene_name": "Syn1", "gene_names_uniprotkb": "Syn1", "gene_names_refseq": "Syn1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Synapsin I is phosphorylated at Ser603 by p21-activated kinases (PAKs) in vitro and in PC12 cells stimulated with bradykinin.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Sakurada K, Kato H, Nagumo H, Hiraoka H, Furuya K, Ikuhara T, Yamakita Y, Fukunaga K, Miyamoto E, Matsumura F, Matsuo YI, Naito Y, Sasaki Y", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "12237306", "url": "https://glygen.org/publication/PubMed/12237306" } ] }, { "title": "In vitro effects of bisphenol A on developing hypothalamic neurons.", "journal": "Toxicology", "date": "2010", "authors": "Iwakura T, Iwafuchi M, Muraoka D, Yokosuka M, Shiga T, Watanabe C, Ohtani-Kaneko R", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "20399245", "url": "https://glygen.org/publication/PubMed/20399245" } ] }, { "title": "A phospho-switch controls the dynamic association of synapsins with synaptic vesicles.", "journal": "Neuron", "date": "1999", "authors": "Hosaka M, Hammer RE, Sudhof TC", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" } ], "reference": [ { "type": "PubMed", "id": "10571231", "url": "https://glygen.org/publication/PubMed/10571231" } ] } ], "crossref": [ { "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "12237306", "url": "https://glygen.org/publication/PubMed/12237306", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20399245", "url": "https://glygen.org/publication/PubMed/20399245", "database": "PubMed", "categories": [ "Other" ] }, { "id": "10571231", "url": "https://glygen.org/publication/PubMed/10571231", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MNYLRRRL", "down_seq": "DSNFMANLPNGYMTDLQRPQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q64303-1", "kinase_gene_name": "Pak2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "12237306", "url": "https://glygen.org/publication/PubMed/12237306" } ], "site_lbl": "Ser9" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CaMK1 and PKA", "evidence": [ { "database": "UniProtKB", "id": "P09951", "url": "https://www.uniprot.org/uniprotkb/P09951" }, { "database": "iPTMnet", "id": "P09951", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P09951" }, { "database": "PubMed", "id": "20399245", "url": "https://glygen.org/publication/PubMed/20399245" }, { "database": "PubMed", "id": "10571231", "url": "https://glygen.org/publication/PubMed/10571231" } ], "site_lbl": "Ser9" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "96", "end_pos": "96" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "312", "end_pos": "312" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "524", "end_pos": "524" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "576", "end_pos": "576" }, { "start_pos": "603", "end_pos": "603" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "664", "end_pos": "664" }, { "start_pos": "67", "end_pos": "67" }, { "start_pos": "682", "end_pos": "682" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P15242-1.173.173", "start_pos": 173, "end_pos": 173, "uniprot_canonical_ac": "P15242-1", "length": 333, "uniprot_id": "TEST2_RAT", "protein_name": "Testin-2", "refseq_ac": "NP_775155", "refseq_name": "testin-2 precursor", "gene_name": "Testin", "gene_names_uniprotkb": "Testin", "gene_names_refseq": "Testin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15242", "url": "https://www.uniprot.org/uniprotkb/P15242" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P15242", "url": "https://www.uniprot.org/uniprotkb/P15242", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RKTERLIPLSEQNLLDCMGS", "down_seq": "VTHGCSGGFMQYAFQYVKDN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn173", "evidence": [ { "id": "P15242", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15242#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "173", "end_pos": "173" }, { "start_pos": "20", "end_pos": "20" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P15242-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "P15242-1", "length": 333, "uniprot_id": "TEST2_RAT", "protein_name": "Testin-2", "refseq_ac": "NP_775155", "refseq_name": "testin-2 precursor", "gene_name": "Testin", "gene_names_uniprotkb": "Testin", "gene_names_refseq": "Testin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P15242", "url": "https://www.uniprot.org/uniprotkb/P15242" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "", "down_seq": "PDPSLDVEWNEWRTKHGKTY", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr20", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "173", "end_pos": "173" }, { "start_pos": "20", "end_pos": "20" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P27775-1.35.35", "start_pos": 35, "end_pos": 35, "uniprot_canonical_ac": "P27775-1", "length": 71, "uniprot_id": "IPKB_RAT", "protein_name": "cAMP-dependent protein kinase inhibitor beta", "refseq_ac": "", "refseq_name": "", "gene_name": "Pkib", "gene_names_uniprotkb": "Pkib", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P27775", "url": "https://www.uniprot.org/uniprotkb/P27775" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P27775", "url": "https://www.uniprot.org/uniprotkb/P27775" }, { "database": "iPTMnet", "id": "P27775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27775" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P27775", "url": "https://www.uniprot.org/uniprotkb/P27775", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P27775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27775", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ARAGRRNALPDIQSSLATGG", "down_seq": "PDLALKLEALAVKEDAKMKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P27775", "url": "https://www.uniprot.org/uniprotkb/P27775" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P27775", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27775" } ], "site_lbl": "Ser35" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "35", "end_pos": "35" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P45380-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "P45380-1", "length": 703, "uniprot_id": "S26A1_RAT", "protein_name": "Sulfate anion transporter 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc26a1", "gene_names_uniprotkb": "Slc26a1; Sat1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Functional expression cloning of the canalicular sulfate transport system of rat hepatocytes.", "journal": "The Journal of biological chemistry", "date": "1994-01-28", "authors": "Bissig M, Hagenbuch B, Stieger B, Koller T, Meier P J", "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "8300633", "url": "https://glygen.org/publication/PubMed/8300633" } ] } ], "crossref": [ { "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8300633", "url": "https://glygen.org/publication/PubMed/8300633", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DRELQLAGFDPSQDSLGPGN", "down_seq": "DSTLNNTATLTVGLQDCGRD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn158", "evidence": [ { "id": "P45380", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P45380#ptm_processing" }, { "id": "8300633", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/8300633" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "587", "end_pos": "587" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "589", "end_pos": "589" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P45380-1.163.163", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P45380-1.163.163", "start_pos": 163, "end_pos": 163, "uniprot_canonical_ac": "P45380-1", "length": 703, "uniprot_id": "S26A1_RAT", "protein_name": "Sulfate anion transporter 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc26a1", "gene_names_uniprotkb": "Slc26a1; Sat1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Functional expression cloning of the canalicular sulfate transport system of rat hepatocytes.", "journal": "The Journal of biological chemistry", "date": "1994-01-28", "authors": "Bissig M, Hagenbuch B, Stieger B, Koller T, Meier P J", "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "8300633", "url": "https://glygen.org/publication/PubMed/8300633" } ] } ], "crossref": [ { "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8300633", "url": "https://glygen.org/publication/PubMed/8300633", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LAGFDPSQDSLGPGNNDSTL", "down_seq": "NTATLTVGLQDCGRDCHAIR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn163", "evidence": [ { "id": "P45380", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P45380#ptm_processing" }, { "id": "8300633", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/8300633" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "587", "end_pos": "587" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "589", "end_pos": "589" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P45380-1.158.158", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P45380-1.587.587", "start_pos": 587, "end_pos": 587, "uniprot_canonical_ac": "P45380-1", "length": 703, "uniprot_id": "S26A1_RAT", "protein_name": "Sulfate anion transporter 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc26a1", "gene_names_uniprotkb": "Slc26a1; Sat1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Functional expression cloning of the canalicular sulfate transport system of rat hepatocytes.", "journal": "The Journal of biological chemistry", "date": "1994-01-28", "authors": "Bissig M, Hagenbuch B, Stieger B, Koller T, Meier P J", "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "8300633", "url": "https://glygen.org/publication/PubMed/8300633" } ] } ], "crossref": [ { "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8300633", "url": "https://glygen.org/publication/PubMed/8300633", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GLDAGYSATRKDRGTEVGVS", "down_seq": "RSLVDRKDLGSVSSGDGLVV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn587", "evidence": [ { "id": "P45380", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P45380#ptm_processing" }, { "id": "8300633", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/8300633" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "587", "end_pos": "587" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "589", "end_pos": "589" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P45380-1.586.586", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P45380-1.589.589", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P45380-1.13.13", "start_pos": 13, "end_pos": 13, "uniprot_canonical_ac": "P45380-1", "length": 703, "uniprot_id": "S26A1_RAT", "protein_name": "Sulfate anion transporter 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc26a1", "gene_names_uniprotkb": "Slc26a1; Sat1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" }, { "database": "iPTMnet", "id": "P45380", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45380" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P45380", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45380", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MDASPEPPQKGG", "down_seq": "LVLVRRQPPVSQGLLETLKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P45380", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45380" } ], "site_lbl": "Thr13" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "587", "end_pos": "587" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "589", "end_pos": "589" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P45380-1.586.586", "start_pos": 586, "end_pos": 586, "uniprot_canonical_ac": "P45380-1", "length": 703, "uniprot_id": "S26A1_RAT", "protein_name": "Sulfate anion transporter 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc26a1", "gene_names_uniprotkb": "Slc26a1; Sat1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" }, { "database": "iPTMnet", "id": "P45380", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45380" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P45380", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45380", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TGLDAGYSATRKDRGTEVGV", "down_seq": "NRSLVDRKDLGSVSSGDGLV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P45380", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45380" } ], "site_lbl": "Ser586" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "587", "end_pos": "587" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "589", "end_pos": "589" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P45380-1.587.587", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P45380-1.589.589", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P45380-1.589.589", "start_pos": 589, "end_pos": 589, "uniprot_canonical_ac": "P45380-1", "length": 703, "uniprot_id": "S26A1_RAT", "protein_name": "Sulfate anion transporter 1", "refseq_ac": "", "refseq_name": "", "gene_name": "Slc26a1", "gene_names_uniprotkb": "Slc26a1; Sat1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" }, { "database": "iPTMnet", "id": "P45380", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45380" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P45380", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45380", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DAGYSATRKDRGTEVGVSNR", "down_seq": "LVDRKDLGSVSSGDGLVVPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P45380", "url": "https://www.uniprot.org/uniprotkb/P45380" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P45380", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P45380" } ], "site_lbl": "Ser589" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "587", "end_pos": "587" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "589", "end_pos": "589" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P45380-1.586.586", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P45380-1.587.587", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P47861-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "P47861-1", "length": 386, "uniprot_id": "SYT5_RAT", "protein_name": "Synaptotagmin-5", "refseq_ac": "NP_062223", "refseq_name": "synaptotagmin-5", "gene_name": "Syt5", "gene_names_uniprotkb": "Syt5", "gene_names_refseq": "Syt5; SytIX", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47861", "url": "https://www.uniprot.org/uniprotkb/P47861" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MFPEPP", "down_seq": "PGSPAPETPPDSSRIRQGAV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr7", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P47861-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P47861-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P47861-1", "length": 386, "uniprot_id": "SYT5_RAT", "protein_name": "Synaptotagmin-5", "refseq_ac": "NP_062223", "refseq_name": "synaptotagmin-5", "gene_name": "Syt5", "gene_names_uniprotkb": "Syt5", "gene_names_refseq": "Syt5; SytIX", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P47861", "url": "https://www.uniprot.org/uniprotkb/P47861" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P47861", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47861" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P47861", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47861", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P47861", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P47861" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P47861-1.7.7", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P54900-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "P54900-1", "length": 215, "uniprot_id": "SCN2B_RAT", "protein_name": "Sodium channel regulatory subunit beta-2", "refseq_ac": "NP_037009", "refseq_name": "sodium channel regulatory subunit beta-2 precursor", "gene_name": "Scn2b", "gene_names_uniprotkb": "Scn2b", "gene_names_refseq": "SCNB2; Scn2b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SLVPSGRSMEVTVPTTLSVL", "down_seq": "GSDTRLPCTFNSCYTVNHKQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn42", "evidence": [ { "id": "P54900", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P54900#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "204", "end_pos": "204" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "P54900-1.55.55", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P54900-1.66.66", "start_pos": 66, "end_pos": 66, "uniprot_canonical_ac": "P54900-1", "length": 215, "uniprot_id": "SCN2B_RAT", "protein_name": "Sodium channel regulatory subunit beta-2", "refseq_ac": "NP_037009", "refseq_name": "sodium channel regulatory subunit beta-2 precursor", "gene_name": "Scn2b", "gene_names_uniprotkb": "Scn2b", "gene_names_refseq": "SCNB2; Scn2b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TRLPCTFNSCYTVNHKQFSL", "down_seq": "WTYQECSNCSEEMFLQFRMK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn66", "evidence": [ { "id": "P54900", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P54900#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "204", "end_pos": "204" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P54900-1.55.55", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P54900-1.74.74", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P54900-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "P54900-1", "length": 215, "uniprot_id": "SCN2B_RAT", "protein_name": "Sodium channel regulatory subunit beta-2", "refseq_ac": "NP_037009", "refseq_name": "sodium channel regulatory subunit beta-2 precursor", "gene_name": "Scn2b", "gene_names_uniprotkb": "Scn2b", "gene_names_refseq": "SCNB2; Scn2b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SCYTVNHKQFSLNWTYQECS", "down_seq": "CSEEMFLQFRMKIINLKLER", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn74", "evidence": [ { "id": "P54900", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P54900#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "204", "end_pos": "204" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P54900-1.55.55", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P54900-1.66.66", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P54900-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "P54900-1", "length": 215, "uniprot_id": "SCN2B_RAT", "protein_name": "Sodium channel regulatory subunit beta-2", "refseq_ac": "NP_037009", "refseq_name": "sodium channel regulatory subunit beta-2 precursor", "gene_name": "Scn2b", "gene_names_uniprotkb": "Scn2b", "gene_names_refseq": "SCNB2; Scn2b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Identification of the cysteine residue responsible for disulfide linkage of Na+ channel alpha and beta2 subunits.", "journal": "The Journal of biological chemistry", "date": "2012", "authors": "Chen C, Calhoun JD, Zhang Y, Lopez-Santiago L, Zhou N, Davis TH, Salzer JL, Isom LL", "evidence": [ { "database": "UniProtKB", "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900" } ], "reference": [ { "type": "PubMed", "id": "22992729", "url": "https://glygen.org/publication/PubMed/22992729" } ] } ], "crossref": [ { "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22992729", "url": "https://glygen.org/publication/PubMed/22992729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "PTTLSVLNGSDTRLPCTFNS", "down_seq": "YTVNHKQFSLNWTYQECSNC", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of disulfide linkage with alpha subunit. No effect on localization to the plasma membrane. Loss of localization to node of Ranvier.", "evidence": [ { "database": "UniProtKB", "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900" }, { "database": "PubMed", "id": "22992729", "url": "https://glygen.org/publication/PubMed/22992729" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "204", "end_pos": "204" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P54900-1.42.42", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P54900-1.66.66", "categories": [ "glycosylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P54900-1.74.74", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P54900-1.192.192", "start_pos": 192, "end_pos": 192, "uniprot_canonical_ac": "P54900-1", "length": 215, "uniprot_id": "SCN2B_RAT", "protein_name": "Sodium channel regulatory subunit beta-2", "refseq_ac": "NP_037009", "refseq_name": "sodium channel regulatory subunit beta-2 precursor", "gene_name": "Scn2b", "gene_names_uniprotkb": "Scn2b", "gene_names_refseq": "SCNB2; Scn2b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900" }, { "database": "iPTMnet", "id": "P54900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54900" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P54900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54900", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VVILVLMVVKCVRRKKEQKL", "down_seq": "TDDLKTEEEGKTDGEGNAED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P54900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54900" } ], "site_lbl": "Ser192" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "204", "end_pos": "204" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "P54900-1.204.204", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P54900-1.204.204", "start_pos": 204, "end_pos": 204, "uniprot_canonical_ac": "P54900-1", "length": 215, "uniprot_id": "SCN2B_RAT", "protein_name": "Sodium channel regulatory subunit beta-2", "refseq_ac": "NP_037009", "refseq_name": "sodium channel regulatory subunit beta-2 precursor", "gene_name": "Scn2b", "gene_names_uniprotkb": "Scn2b", "gene_names_refseq": "SCNB2; Scn2b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900" }, { "database": "iPTMnet", "id": "P54900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54900" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P54900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54900", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RRKKEQKLSTDDLKTEEEGK", "down_seq": "DGEGNAEDGAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P54900", "url": "https://www.uniprot.org/uniprotkb/P54900" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P54900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P54900" } ], "site_lbl": "Thr204" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "42", "end_pos": "42" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "204", "end_pos": "204" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P54900-1.192.192", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2MHH0-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "Q2MHH0-1", "length": 173, "uniprot_id": "TARG1_RAT", "protein_name": "Trafficking regulator of GLUT4 1", "refseq_ac": "NP_001034252", "refseq_name": "trafficking regulator of GLUT4 1", "gene_name": "Trarg1", "gene_names_uniprotkb": "Trarg1; Tusc5", "gene_names_refseq": "DSPB1; Trarg1; Tusc5", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" }, { "database": "iPTMnet", "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MANPVQPQLQDPGST", "down_seq": "PLDLPEMEKLLTKVENKDDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2MHH0-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "Q2MHH0-1", "length": 173, "uniprot_id": "TARG1_RAT", "protein_name": "Trafficking regulator of GLUT4 1", "refseq_ac": "NP_001034252", "refseq_name": "trafficking regulator of GLUT4 1", "gene_name": "Trarg1", "gene_names_uniprotkb": "Trarg1; Tusc5", "gene_names_refseq": "DSPB1; Trarg1; Tusc5", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" }, { "database": "iPTMnet", "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEKLLTKVENKDDQALNLSK", "down_seq": "LSGALDLEQNGHSLPFKVIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0" } ], "site_lbl": "Ser43" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q2MHH0-1.45.45", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2MHH0-1.45.45", "start_pos": 45, "end_pos": 45, "uniprot_canonical_ac": "Q2MHH0-1", "length": 173, "uniprot_id": "TARG1_RAT", "protein_name": "Trafficking regulator of GLUT4 1", "refseq_ac": "NP_001034252", "refseq_name": "trafficking regulator of GLUT4 1", "gene_name": "Trarg1", "gene_names_uniprotkb": "Trarg1; Tusc5", "gene_names_refseq": "DSPB1; Trarg1; Tusc5", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" }, { "database": "iPTMnet", "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLLTKVENKDDQALNLSKSL", "down_seq": "GALDLEQNGHSLPFKVISEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0" } ], "site_lbl": "Ser45" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q2MHH0-1.43.43", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2MHH0-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "Q2MHH0-1", "length": 173, "uniprot_id": "TARG1_RAT", "protein_name": "Trafficking regulator of GLUT4 1", "refseq_ac": "NP_001034252", "refseq_name": "trafficking regulator of GLUT4 1", "gene_name": "Trarg1", "gene_names_uniprotkb": "Trarg1; Tusc5", "gene_names_refseq": "DSPB1; Trarg1; Tusc5", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" }, { "database": "iPTMnet", "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEQNGHSLPFKVISEGHRQP", "down_seq": "LSGSPSRASSRRASSVVTTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0" } ], "site_lbl": "Ser70" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q2MHH0-1.84.84", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q2MHH0-1.85.85", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2MHH0-1.84.84", "start_pos": 84, "end_pos": 84, "uniprot_canonical_ac": "Q2MHH0-1", "length": 173, "uniprot_id": "TARG1_RAT", "protein_name": "Trafficking regulator of GLUT4 1", "refseq_ac": "NP_001034252", "refseq_name": "trafficking regulator of GLUT4 1", "gene_name": "Trarg1", "gene_names_uniprotkb": "Trarg1; Tusc5", "gene_names_refseq": "DSPB1; Trarg1; Tusc5", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" }, { "database": "iPTMnet", "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EGHRQPSLSGSPSRASSRRA", "down_seq": "SVVTTSYAQDQEAPKDYLVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0" } ], "site_lbl": "Ser84" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q2MHH0-1.70.70", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q2MHH0-1.85.85", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q2MHH0-1.85.85", "start_pos": 85, "end_pos": 85, "uniprot_canonical_ac": "Q2MHH0-1", "length": 173, "uniprot_id": "TARG1_RAT", "protein_name": "Trafficking regulator of GLUT4 1", "refseq_ac": "NP_001034252", "refseq_name": "trafficking regulator of GLUT4 1", "gene_name": "Trarg1", "gene_names_uniprotkb": "Trarg1; Tusc5", "gene_names_refseq": "DSPB1; Trarg1; Tusc5", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" }, { "database": "iPTMnet", "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GHRQPSLSGSPSRASSRRAS", "down_seq": "VVTTSYAQDQEAPKDYLVLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q2MHH0", "url": "https://www.uniprot.org/uniprotkb/Q2MHH0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q2MHH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q2MHH0" } ], "site_lbl": "Ser85" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "84", "end_pos": "84" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q2MHH0-1.70.70", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q2MHH0-1.84.84", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q498M5-1.570.570", "start_pos": 570, "end_pos": 570, "uniprot_canonical_ac": "Q498M5-1", "length": 735, "uniprot_id": "SH3R2_RAT", "protein_name": "E3 ubiquitin-protein ligase SH3RF2", "refseq_ac": "NP_001029359", "refseq_name": "E3 ubiquitin-protein ligase SH3RF2", "gene_name": "Sh3rf2", "gene_names_uniprotkb": "Sh3rf2; Posh3; Posher; Ppp1r39; Rnf158", "gene_names_refseq": "Posh2; Ppp1r39; Sh3rf2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q498M5", "url": "https://www.uniprot.org/uniprotkb/Q498M5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MVIRPQKFQFYQPQGMTPSP", "down_seq": "PIMVEIGSKSISTGEPALTC", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr570", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "570", "end_pos": "570" }, { "start_pos": "667", "end_pos": "667" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "655", "end_pos": "655" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q498M5-1.667.667", "start_pos": 667, "end_pos": 667, "uniprot_canonical_ac": "Q498M5-1", "length": 735, "uniprot_id": "SH3R2_RAT", "protein_name": "E3 ubiquitin-protein ligase SH3RF2", "refseq_ac": "NP_001029359", "refseq_name": "E3 ubiquitin-protein ligase SH3RF2", "gene_name": "Sh3rf2", "gene_names_uniprotkb": "Sh3rf2; Posh3; Posher; Ppp1r39; Rnf158", "gene_names_refseq": "Posh2; Ppp1r39; Sh3rf2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q498M5", "url": "https://www.uniprot.org/uniprotkb/Q498M5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KTVRFQNYSPPPTKHSASGP", "down_seq": "SGKHEQPATLKGSQPEAVSS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr667", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "570", "end_pos": "570" }, { "start_pos": "667", "end_pos": "667" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "655", "end_pos": "655" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q498M5-1.655.655", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q498M5-1.655.655", "start_pos": 655, "end_pos": 655, "uniprot_canonical_ac": "Q498M5-1", "length": 735, "uniprot_id": "SH3R2_RAT", "protein_name": "E3 ubiquitin-protein ligase SH3RF2", "refseq_ac": "NP_001029359", "refseq_name": "E3 ubiquitin-protein ligase SH3RF2", "gene_name": "Sh3rf2", "gene_names_uniprotkb": "Sh3rf2; Posh3; Posher; Ppp1r39; Rnf158", "gene_names_refseq": "Posh2; Ppp1r39; Sh3rf2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q498M5", "url": "https://www.uniprot.org/uniprotkb/Q498M5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q498M5", "url": "https://www.uniprot.org/uniprotkb/Q498M5" }, { "database": "iPTMnet", "id": "Q498M5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q498M5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q498M5", "url": "https://www.uniprot.org/uniprotkb/Q498M5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q498M5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q498M5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PENSKNGIEKQVKTVRFQNY", "down_seq": "PPPTKHSASGPTSGKHEQPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q498M5", "url": "https://www.uniprot.org/uniprotkb/Q498M5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q498M5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q498M5" } ], "site_lbl": "Ser655" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "570", "end_pos": "570" }, { "start_pos": "667", "end_pos": "667" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "655", "end_pos": "655" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q498M5-1.667.667", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5XIN1-1.180.180", "start_pos": 180, "end_pos": 180, "uniprot_canonical_ac": "Q5XIN1-1", "length": 490, "uniprot_id": "MDM4_RAT", "protein_name": "Protein Mdm4", "refseq_ac": "NP_001012026", "refseq_name": "protein Mdm4", "gene_name": "Mdm4", "gene_names_uniprotkb": "Mdm4; Mdmx", "gene_names_refseq": "Mdm4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5XIN1", "url": "https://www.uniprot.org/uniprotkb/Q5XIN1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5XIN1", "url": "https://www.uniprot.org/uniprotkb/Q5XIN1" }, { "database": "iPTMnet", "id": "Q5XIN1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XIN1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5XIN1", "url": "https://www.uniprot.org/uniprotkb/Q5XIN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5XIN1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XIN1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTSRRKCRDSRADEDLIEHL", "down_seq": "QDETSRLDLDFEEWDVAGLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5XIN1", "url": "https://www.uniprot.org/uniprotkb/Q5XIN1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5XIN1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5XIN1" } ], "site_lbl": "Ser180" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "368", "end_pos": "368" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5XIN1-1.342.342", "start_pos": 342, "end_pos": 342, "uniprot_canonical_ac": "Q5XIN1-1", "length": 490, "uniprot_id": "MDM4_RAT", "protein_name": "Protein Mdm4", "refseq_ac": "NP_001012026", "refseq_name": "protein Mdm4", "gene_name": "Mdm4", "gene_names_uniprotkb": "Mdm4; Mdmx", "gene_names_refseq": "Mdm4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5XIN1", "url": "https://www.uniprot.org/uniprotkb/Q5XIN1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5XIN1", "url": "https://www.uniprot.org/uniprotkb/Q5XIN1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RCWALRKDWYSDCSKLTHSL", "down_seq": "TSNITAIPEKKDNEGIDVPD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CHEK2", "evidence": [ { "database": "UniProtKB", "id": "Q5XIN1", "url": "https://www.uniprot.org/uniprotkb/Q5XIN1" } ], "site_lbl": "Ser342" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "368", "end_pos": "368" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5XIN1-1.368.368", "start_pos": 368, "end_pos": 368, "uniprot_canonical_ac": "Q5XIN1-1", "length": 490, "uniprot_id": "MDM4_RAT", "protein_name": "Protein Mdm4", "refseq_ac": "NP_001012026", "refseq_name": "protein Mdm4", "gene_name": "Mdm4", "gene_names_uniprotkb": "Mdm4; Mdmx", "gene_names_refseq": "Mdm4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5XIN1", "url": "https://www.uniprot.org/uniprotkb/Q5XIN1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5XIN1", "url": "https://www.uniprot.org/uniprotkb/Q5XIN1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AIPEKKDNEGIDVPDCRRTI", "down_seq": "APVVRPKDGYLKEEKPRFDP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CHEK1 and CHEK2", "evidence": [ { "database": "UniProtKB", "id": "Q5XIN1", "url": "https://www.uniprot.org/uniprotkb/Q5XIN1" } ], "site_lbl": "Ser368" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "368", "end_pos": "368" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62634-1.504.504", "start_pos": 504, "end_pos": 504, "uniprot_canonical_ac": "Q62634-1", "length": 560, "uniprot_id": "VGLU1_RAT", "protein_name": "Vesicular glutamate transporter 1", "refseq_ac": "NP_446311", "refseq_name": "vesicular glutamate transporter 1", "gene_name": "Slc17a7", "gene_names_uniprotkb": "Slc17a7; Bnpi; Vglut1", "gene_names_refseq": "BNPI; Slc17a7; Vglut1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62634", "url": "https://www.uniprot.org/uniprotkb/Q62634" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62634", "url": "https://www.uniprot.org/uniprotkb/Q62634" }, { "database": "iPTMnet", "id": "Q62634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62634" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62634", "url": "https://www.uniprot.org/uniprotkb/Q62634", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62634", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IFYGVFASGEKQPWAEPEEM", "down_seq": "EEKCGFVGHDQLAGSDESEM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62634", "url": "https://www.uniprot.org/uniprotkb/Q62634" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62634", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62634" } ], "site_lbl": "Ser504" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "504", "end_pos": "504" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7TNK0-1.351.351", "start_pos": 351, "end_pos": 351, "uniprot_canonical_ac": "Q7TNK0-1", "length": 453, "uniprot_id": "SERC1_RAT", "protein_name": "Serine incorporator 1", "refseq_ac": "NP_891996", "refseq_name": "serine incorporator 1", "gene_name": "Serinc1", "gene_names_uniprotkb": "Serinc1; Tde1l; Tde2", "gene_names_refseq": "LRRGT00191; Serinc1; Tde1l; Tde2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSIRTSNNSQVNKLTLTSDE", "down_seq": "TLIEDGNGRSDGSLDDGEGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0" } ], "site_lbl": "Ser351" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "351", "end_pos": "351" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q7TNK0-1.352.352", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q7TNK0-1.361.361", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q7TNK0-1.364.364", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TNK0-1.352.352", "start_pos": 352, "end_pos": 352, "uniprot_canonical_ac": "Q7TNK0-1", "length": 453, "uniprot_id": "SERC1_RAT", "protein_name": "Serine incorporator 1", "refseq_ac": "NP_891996", "refseq_name": "serine incorporator 1", "gene_name": "Serinc1", "gene_names_uniprotkb": "Serinc1; Tde1l; Tde2", "gene_names_refseq": "LRRGT00191; Serinc1; Tde1l; Tde2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SIRTSNNSQVNKLTLTSDES", "down_seq": "LIEDGNGRSDGSLDDGEGVH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0" } ], "site_lbl": "Thr352" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "351", "end_pos": "351" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q7TNK0-1.351.351", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q7TNK0-1.361.361", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q7TNK0-1.364.364", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TNK0-1.361.361", "start_pos": 361, "end_pos": 361, "uniprot_canonical_ac": "Q7TNK0-1", "length": 453, "uniprot_id": "SERC1_RAT", "protein_name": "Serine incorporator 1", "refseq_ac": "NP_891996", "refseq_name": "serine incorporator 1", "gene_name": "Serinc1", "gene_names_uniprotkb": "Serinc1; Tde1l; Tde2", "gene_names_refseq": "LRRGT00191; Serinc1; Tde1l; Tde2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VNKLTLTSDESTLIEDGNGR", "down_seq": "DGSLDDGEGVHRAVDNERDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0" } ], "site_lbl": "Ser361" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "351", "end_pos": "351" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q7TNK0-1.351.351", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q7TNK0-1.352.352", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q7TNK0-1.364.364", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7TNK0-1.364.364", "start_pos": 364, "end_pos": 364, "uniprot_canonical_ac": "Q7TNK0-1", "length": 453, "uniprot_id": "SERC1_RAT", "protein_name": "Serine incorporator 1", "refseq_ac": "NP_891996", "refseq_name": "serine incorporator 1", "gene_name": "Serinc1", "gene_names_uniprotkb": "Serinc1; Tde1l; Tde2", "gene_names_refseq": "LRRGT00191; Serinc1; Tde1l; Tde2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0" }, { "database": "iPTMnet", "id": "Q7TNK0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TNK0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q7TNK0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TNK0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LTLTSDESTLIEDGNGRSDG", "down_seq": "LDDGEGVHRAVDNERDGVTY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q7TNK0", "url": "https://www.uniprot.org/uniprotkb/Q7TNK0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q7TNK0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q7TNK0" } ], "site_lbl": "Ser364" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "351", "end_pos": "351" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q7TNK0-1.351.351", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q7TNK0-1.352.352", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q7TNK0-1.361.361", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q7TSF2-1.106.106", "start_pos": 106, "end_pos": 106, "uniprot_canonical_ac": "Q7TSF2-1", "length": 588, "uniprot_id": "VGLU3_RAT", "protein_name": "Vesicular glutamate transporter 3", "refseq_ac": "NP_714947", "refseq_name": "vesicular glutamate transporter 3", "gene_name": "Slc17a8", "gene_names_uniprotkb": "Slc17a8; Vglut3", "gene_names_refseq": "Slc17a8; Vglut3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q7TSF2", "url": "https://www.uniprot.org/uniprotkb/Q7TSF2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q7TSF2", "url": "https://www.uniprot.org/uniprotkb/Q7TSF2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FCISFGIRCNLGVAIVEMVN", "down_seq": "STVYVDGKPEIQTAQFNWDP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn106", "evidence": [ { "id": "Q7TSF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7TSF2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "106", "end_pos": "106" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9EQS5-1.253.253", "start_pos": 253, "end_pos": 253, "uniprot_canonical_ac": "Q9EQS5-1", "length": 299, "uniprot_id": "SC5D_RAT", "protein_name": "Lathosterol oxidase", "refseq_ac": "NP_446094", "refseq_name": "lathosterol oxidase", "gene_name": "Sc5d", "gene_names_uniprotkb": "Sc5d; C5d", "gene_names_refseq": "Sc5dl; Sc5d", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9EQS5", "url": "https://www.uniprot.org/uniprotkb/Q9EQS5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9EQS5", "url": "https://www.uniprot.org/uniprotkb/Q9EQS5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HMLFDYNYGQYFTLWDRIGG", "down_seq": "FKHPSSFEGKGPHSYVKNMT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9EQS5", "url": "https://www.uniprot.org/uniprotkb/Q9EQS5" } ], "site_lbl": "Ser253" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "253", "end_pos": "253" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WVR6-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "Q9WVR6-1", "length": 533, "uniprot_id": "LAT2_RAT", "protein_name": "Large neutral amino acids transporter small subunit 2", "refseq_ac": "NP_445894", "refseq_name": "large neutral amino acids transporter small subunit 2", "gene_name": "Slc7a8", "gene_names_uniprotkb": "Slc7a8; Lat2; Lat4", "gene_names_refseq": "Lat2; Lat4; Slc7a8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "", "down_seq": "DTSPEAEASSGGGGVALKKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" } ], "site_lbl": "Ser20" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "529", "end_pos": "529" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9WVR6-1.23.23", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9WVR6-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9WVR6-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9WVR6-1.23.23", "start_pos": 23, "end_pos": 23, "uniprot_canonical_ac": "Q9WVR6-1", "length": 533, "uniprot_id": "LAT2_RAT", "protein_name": "Large neutral amino acids transporter small subunit 2", "refseq_ac": "NP_445894", "refseq_name": "large neutral amino acids transporter small subunit 2", "gene_name": "Slc7a8", "gene_names_uniprotkb": "Slc7a8; Lat2; Lat4", "gene_names_refseq": "Lat2; Lat4; Slc7a8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" }, { "database": "iPTMnet", "id": "Q9WVR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVR6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WVR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVR6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KGTRQRNNTAKNHPDRGSDT", "down_seq": "PEAEASSGGGGVALKKEIGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WVR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVR6" } ], "site_lbl": "Ser23" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "529", "end_pos": "529" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9WVR6-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9WVR6-1.29.29", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9WVR6-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WVR6-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "Q9WVR6-1", "length": 533, "uniprot_id": "LAT2_RAT", "protein_name": "Large neutral amino acids transporter small subunit 2", "refseq_ac": "NP_445894", "refseq_name": "large neutral amino acids transporter small subunit 2", "gene_name": "Slc7a8", "gene_names_uniprotkb": "Slc7a8; Lat2; Lat4", "gene_names_refseq": "Lat2; Lat4; Slc7a8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" }, { "database": "iPTMnet", "id": "Q9WVR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVR6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WVR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVR6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NNTAKNHPDRGSDTSPEAEA", "down_seq": "SGGGGVALKKEIGLVSACGI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WVR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVR6" } ], "site_lbl": "Ser29" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "529", "end_pos": "529" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q9WVR6-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9WVR6-1.23.23", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9WVR6-1.30.30", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WVR6-1.30.30", "start_pos": 30, "end_pos": 30, "uniprot_canonical_ac": "Q9WVR6-1", "length": 533, "uniprot_id": "LAT2_RAT", "protein_name": "Large neutral amino acids transporter small subunit 2", "refseq_ac": "NP_445894", "refseq_name": "large neutral amino acids transporter small subunit 2", "gene_name": "Slc7a8", "gene_names_uniprotkb": "Slc7a8; Lat2; Lat4", "gene_names_refseq": "Lat2; Lat4; Slc7a8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" }, { "database": "iPTMnet", "id": "Q9WVR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVR6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WVR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVR6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NTAKNHPDRGSDTSPEAEAS", "down_seq": "GGGGVALKKEIGLVSACGII", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WVR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVR6" } ], "site_lbl": "Ser30" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "529", "end_pos": "529" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9WVR6-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9WVR6-1.23.23", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9WVR6-1.29.29", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9WVR6-1.529.529", "start_pos": 529, "end_pos": 529, "uniprot_canonical_ac": "Q9WVR6-1", "length": 533, "uniprot_id": "LAT2_RAT", "protein_name": "Large neutral amino acids transporter small subunit 2", "refseq_ac": "NP_445894", "refseq_name": "large neutral amino acids transporter small subunit 2", "gene_name": "Slc7a8", "gene_names_uniprotkb": "Slc7a8; Lat2; Lat4", "gene_names_refseq": "Lat2; Lat4; Slc7a8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" }, { "database": "iPTMnet", "id": "Q9WVR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVR6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9WVR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVR6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DDVEEQHKPIFQPTPVKDPD", "down_seq": "EEQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9WVR6", "url": "https://www.uniprot.org/uniprotkb/Q9WVR6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9WVR6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9WVR6" } ], "site_lbl": "Ser529" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "20", "end_pos": "20" }, { "start_pos": "23", "end_pos": "23" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "529", "end_pos": "529" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZML2-1.464.464", "start_pos": 464, "end_pos": 464, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TPKGTPVHTPKESPAGTPNP", "down_seq": "PPSSPSVGGVPWRTRLNSIK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr464", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "site_lbl": "Thr464" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "D3ZML2-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "D3ZML2-1.460.460", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D3ZML2-1.175.175", "start_pos": 175, "end_pos": 175, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NIRIADFGMASLQVGDSLLE", "down_seq": "SCGSPHYACPEVIRGEKYDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by LKB1", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "site_lbl": "Thr175" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D3ZML2-1.261.261", "start_pos": 261, "end_pos": 261, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PPDCQSLLRGMIEVDAARRL", "down_seq": "LEHIQKHIWYIGGKNEPEPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKA", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "site_lbl": "Thr261" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D3ZML2-1.295.295", "start_pos": 295, "end_pos": 295, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" }, { "database": "iPTMnet", "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KNEPEPEQPIPRKVQIRSLP", "down_seq": "LEDIDPDVLDSMHSLGCFRD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2" } ], "site_lbl": "Ser295" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZML2-1.368.368", "start_pos": 368, "end_pos": 368, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HEDEDLPPRNEIDPPRKRVD", "down_seq": "PMLNRHGKRRPERKSMEVLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "site_lbl": "Ser368" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "D3ZML2-1.383.383", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D3ZML2-1.383.383", "start_pos": 383, "end_pos": 383, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" }, { "database": "iPTMnet", "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKRVDSPMLNRHGKRRPERK", "down_seq": "MEVLSVTDGGSPVPARRAIE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2" } ], "site_lbl": "Ser383" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "D3ZML2-1.368.368", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "D3ZML2-1.394.394", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZML2-1.394.394", "start_pos": 394, "end_pos": 394, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" }, { "database": "iPTMnet", "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HGKRRPERKSMEVLSVTDGG", "down_seq": "PVPARRAIEMAQHGQRSRSI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2" } ], "site_lbl": "Ser394" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "D3ZML2-1.383.383", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "D3ZML2-1.413.413", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZML2-1.413.413", "start_pos": 413, "end_pos": 413, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSPVPARRAIEMAQHGQRSR", "down_seq": "ISGASSGLSTSPLSSPRVTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "site_lbl": "Ser413" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "D3ZML2-1.394.394", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "D3ZML2-1.424.424", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "D3ZML2-1.428.428", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D3ZML2-1.424.424", "start_pos": 424, "end_pos": 424, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" }, { "database": "iPTMnet", "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAQHGQRSRSISGASSGLST", "down_seq": "PLSSPRVTPHPSPRGSPLPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2" } ], "site_lbl": "Ser424" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "D3ZML2-1.413.413", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "D3ZML2-1.428.428", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZML2-1.428.428", "start_pos": 428, "end_pos": 428, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" }, { "database": "iPTMnet", "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GQRSRSISGASSGLSTSPLS", "down_seq": "PRVTPHPSPRGSPLPTPKGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2" } ], "site_lbl": "Ser428" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "D3ZML2-1.413.413", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "D3ZML2-1.424.424", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZML2-1.456.456", "start_pos": 456, "end_pos": 456, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" }, { "database": "iPTMnet", "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPRGSPLPTPKGTPVHTPKE", "down_seq": "PAGTPNPTPPSSPSVGGVPW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZML2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZML2" } ], "site_lbl": "Ser456" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "D3ZML2-1.460.460", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "D3ZML2-1.464.464", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZML2-1.460.460", "start_pos": 460, "end_pos": 460, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SPLPTPKGTPVHTPKESPAG", "down_seq": "PNPTPPSSPSVGGVPWRTRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "site_lbl": "Thr460" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "D3ZML2-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "D3ZML2-1.464.464", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D3ZML2-1.510.510", "start_pos": 510, "end_pos": 510, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SPRFHRRKLQVPTPEEMSNL", "down_seq": "PESSPELGHLQLFGNPVSKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "site_lbl": "Thr510" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "D3ZML2-1.513.513", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "D3ZML2-1.514.514", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D3ZML2-1.513.513", "start_pos": 513, "end_pos": 513, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FHRRKLQVPTPEEMSNLTPE", "down_seq": "SPELGHLQLFGNPVSKVRSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "site_lbl": "Ser513" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "D3ZML2-1.510.510", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "D3ZML2-1.514.514", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D3ZML2-1.514.514", "start_pos": 514, "end_pos": 514, "uniprot_canonical_ac": "D3ZML2-1", "length": 735, "uniprot_id": "BRSK2_RAT", "protein_name": "Serine/threonine-protein kinase BRSK2", "refseq_ac": "", "refseq_name": "", "gene_name": "Brsk2", "gene_names_uniprotkb": "Brsk2; Sada", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HRRKLQVPTPEEMSNLTPES", "down_seq": "PELGHLQLFGNPVSKVRSVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZML2", "url": "https://www.uniprot.org/uniprotkb/D3ZML2" } ], "site_lbl": "Ser514" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "175", "end_pos": "175" }, { "start_pos": "261", "end_pos": "261" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "428", "end_pos": "428" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "513", "end_pos": "513" }, { "start_pos": "514", "end_pos": "514" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "D3ZML2-1.510.510", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "D3ZML2-1.513.513", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O09171-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Betaine homocysteine S-methyltransferase emerges as a new player of the nuclear methionine cycle.", "journal": "Biochimica et biophysica acta. Molecular cell research", "date": "2017", "authors": "Perez-Miguelsanz J, Vallecillo N, Garrido F, Reytor E, Perez-Sala D, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "reference": [ { "type": "PubMed", "id": "28288879", "url": "https://glygen.org/publication/PubMed/28288879" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28288879", "url": "https://glygen.org/publication/PubMed/28288879", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "MAPIAGKKA", "down_seq": "RGILERLNAGEVVIGDGGFV", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Has no effect on tetramer assembly. Decreases the catalytic efficiency. Alters nucleocytoplasmic distribution.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "28288879", "url": "https://glygen.org/publication/PubMed/28288879" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O09171-1.7.7", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O09171-1.8.8", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O09171-1.11.11", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O09171-1.21.21", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O09171-1.26.26", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.119.119", "start_pos": 119, "end_pos": 119, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Active-site-mutagenesis study of rat liver betaine-homocysteine S-methyltransferase.", "journal": "The Biochemical journal", "date": "2003", "authors": "Gonzalez B, Campillo N, Garrido F, Gasset M, Sanz-Aparicio J, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "RefSeq", "id": "NP_110477", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_110477" } ], "reference": [ { "type": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "VNEAACDIARQVADEGDALV", "down_seq": "GGVSQTPSYLSCKSETEVKK", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "G", "comment": "Decreases the catalytic efficiency.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Betaine homocysteine S-methyltransferase emerges as a new player of the nuclear methionine cycle.", "journal": "Biochimica et biophysica acta. Molecular cell research", "date": "2017", "authors": "Perez-Miguelsanz J, Vallecillo N, Garrido F, Reytor E, Perez-Sala D, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "reference": [ { "type": "PubMed", "id": "28288879", "url": "https://glygen.org/publication/PubMed/28288879" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28288879", "url": "https://glygen.org/publication/PubMed/28288879", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "MAPIAGKKAK", "down_seq": "GILERLNAGEVVIGDGGFVF", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Has no effect on tetramer assembly.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "28288879", "url": "https://glygen.org/publication/PubMed/28288879" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O09171-1.7.7", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O09171-1.8.8", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O09171-1.10.10", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O09171-1.21.21", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O09171-1.26.26", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.159.159", "start_pos": 159, "end_pos": 159, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Active-site-mutagenesis study of rat liver betaine-homocysteine S-methyltransferase.", "journal": "The Biochemical journal", "date": "2003", "authors": "Gonzalez B, Campillo N, Garrido F, Gasset M, Sanz-Aparicio J, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "RefSeq", "id": "NP_110477", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_110477" } ], "reference": [ { "type": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "KIFHQQLEVFMKKNVDFLIA", "down_seq": "YFEHVEEAVWAVEALKTSGK", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "G", "comment": "Loss of catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] }, { "sequence_org": "E", "sequence_mut": "K", "comment": "Loss of catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.184.184", "start_pos": 184, "end_pos": 184, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Active-site-mutagenesis study of rat liver betaine-homocysteine S-methyltransferase.", "journal": "The Biochemical journal", "date": "2003", "authors": "Gonzalez B, Campillo N, Garrido F, Gasset M, Sanz-Aparicio J, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "RefSeq", "id": "NP_110477", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_110477" } ], "reference": [ { "type": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VEEAVWAVEALKTSGKPIAA", "down_seq": "MCIGPEGDLHGVSPGECAVR", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "G", "comment": "Decreases the catalytic efficiency.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O09171-1.186.186", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.186.186", "start_pos": 186, "end_pos": 186, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Active-site-mutagenesis study of rat liver betaine-homocysteine S-methyltransferase.", "journal": "The Biochemical journal", "date": "2003", "authors": "Gonzalez B, Campillo N, Garrido F, Gasset M, Sanz-Aparicio J, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "RefSeq", "id": "NP_110477", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_110477" } ], "reference": [ { "type": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "EAVWAVEALKTSGKPIAATM", "down_seq": "IGPEGDLHGVSPGECAVRLV", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Decreases the catalytic efficiency. Increases the affinity for L-homocysteine.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] }, { "sequence_org": "C", "sequence_mut": "S", "comment": "Decreases the catalytic efficiency. Increases the affinity for L-homocysteine.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O09171-1.184.184", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.21.21", "start_pos": 21, "end_pos": 21, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Active-site-mutagenesis study of rat liver betaine-homocysteine S-methyltransferase.", "journal": "The Biochemical journal", "date": "2003", "authors": "Gonzalez B, Campillo N, Garrido F, Gasset M, Sanz-Aparicio J, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "RefSeq", "id": "NP_110477", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_110477" } ], "reference": [ { "type": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "MAPIAGKKAKRGILERLNAG", "down_seq": "VVIGDGGFVFALEKRGYVKA", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Decreases the catalytic efficiency. Increases the affinity for L-homocysteine.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] }, { "sequence_org": "E", "sequence_mut": "K", "comment": "Decreases the catalytic efficiency. Increases the affinity for L-homocysteine.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O09171-1.7.7", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O09171-1.8.8", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O09171-1.10.10", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O09171-1.11.11", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O09171-1.26.26", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Active-site-mutagenesis study of rat liver betaine-homocysteine S-methyltransferase.", "journal": "The Biochemical journal", "date": "2003", "authors": "Gonzalez B, Campillo N, Garrido F, Gasset M, Sanz-Aparicio J, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "RefSeq", "id": "NP_110477", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_110477" } ], "reference": [ { "type": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "GKKAKRGILERLNAGEVVIG", "down_seq": "GGFVFALEKRGYVKAGPWTP", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Decreases the catalytic efficiency. Decreases the affinity for glycine betaine.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] }, { "sequence_org": "D", "sequence_mut": "I", "comment": "Decreases the catalytic efficiency. Decreases the affinity for glycine betaine.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O09171-1.7.7", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "downstream", "id": "O09171-1.8.8", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O09171-1.10.10", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O09171-1.11.11", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O09171-1.21.21", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Active-site-mutagenesis study of rat liver betaine-homocysteine S-methyltransferase.", "journal": "The Biochemical journal", "date": "2003", "authors": "Gonzalez B, Campillo N, Garrido F, Gasset M, Sanz-Aparicio J, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "RefSeq", "id": "NP_110477", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_110477" } ], "reference": [ { "type": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PEAVRQLHREFLRAGSNVMQ", "down_seq": "FTFYASEDKLENRGNYVAEK", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "G", "comment": "Decreases the catalytic efficiency.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O09171-1.74.74", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O09171-1.77.77", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Active-site-mutagenesis study of rat liver betaine-homocysteine S-methyltransferase.", "journal": "The Biochemical journal", "date": "2003", "authors": "Gonzalez B, Campillo N, Garrido F, Gasset M, Sanz-Aparicio J, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "RefSeq", "id": "NP_110477", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_110477" } ], "reference": [ { "type": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "EAVRQLHREFLRAGSNVMQT", "down_seq": "TFYASEDKLENRGNYVAEKI", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Decreases the catalytic efficiency. Decreases the affinity for glycine betaine.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O09171-1.73.73", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O09171-1.77.77", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Active-site-mutagenesis study of rat liver betaine-homocysteine S-methyltransferase.", "journal": "The Biochemical journal", "date": "2003", "authors": "Gonzalez B, Campillo N, Garrido F, Gasset M, Sanz-Aparicio J, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "RefSeq", "id": "NP_110477", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_110477" } ], "reference": [ { "type": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "RQLHREFLRAGSNVMQTFTF", "down_seq": "ASEDKLENRGNYVAEKISGQ", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Decreases the catalytic efficiency.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "12487625", "url": "https://glygen.org/publication/PubMed/12487625" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O09171-1.73.73", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O09171-1.74.74", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Betaine homocysteine S-methyltransferase emerges as a new player of the nuclear methionine cycle.", "journal": "Biochimica et biophysica acta. Molecular cell research", "date": "2017", "authors": "Perez-Miguelsanz J, Vallecillo N, Garrido F, Reytor E, Perez-Sala D, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "reference": [ { "type": "PubMed", "id": "28288879", "url": "https://glygen.org/publication/PubMed/28288879" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28288879", "url": "https://glygen.org/publication/PubMed/28288879", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "MAPIAG", "down_seq": "KAKRGILERLNAGEVVIGDG", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Has no effect on tetramer assembly or catalytic efficiency.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "28288879", "url": "https://glygen.org/publication/PubMed/28288879" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O09171-1.8.8", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O09171-1.10.10", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O09171-1.11.11", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O09171-1.21.21", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O09171-1.26.26", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Betaine homocysteine S-methyltransferase emerges as a new player of the nuclear methionine cycle.", "journal": "Biochimica et biophysica acta. Molecular cell research", "date": "2017", "authors": "Perez-Miguelsanz J, Vallecillo N, Garrido F, Reytor E, Perez-Sala D, Pajares MA", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "reference": [ { "type": "PubMed", "id": "28288879", "url": "https://glygen.org/publication/PubMed/28288879" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28288879", "url": "https://glygen.org/publication/PubMed/28288879", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "MAPIAGK", "down_seq": "AKRGILERLNAGEVVIGDGG", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Has no effect on tetramer assembly. Decreases the catalytic efficiency.", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "28288879", "url": "https://glygen.org/publication/PubMed/28288879" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O09171-1.7.7", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O09171-1.10.10", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O09171-1.11.11", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O09171-1.21.21", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O09171-1.26.26", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O09171-1.330.330", "start_pos": 330, "end_pos": 330, "uniprot_canonical_ac": "O09171-1", "length": 407, "uniprot_id": "BHMT1_RAT", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "refseq_ac": "NP_110477", "refseq_name": "betaine--homocysteine S-methyltransferase 1", "gene_name": "Bhmt", "gene_names_uniprotkb": "Bhmt", "gene_names_refseq": "Bhmt", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "iPTMnet", "id": "O09171", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O09171" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O09171", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O09171", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IAEELAPERGFLPPASEKHG", "down_seq": "WGSGLDMHTKPWIRARARKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O09171", "url": "https://www.uniprot.org/uniprotkb/O09171" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O09171", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O09171" } ], "site_lbl": "Ser330" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "11", "end_pos": "11" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "21", "end_pos": "21" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "74", "end_pos": "74" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "8", "end_pos": "8" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O54898-1.1427.1427", "start_pos": 1427, "end_pos": 1427, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ILGVQLFKGKFFVCQGEDTR", "down_seq": "ITNKSDCAEASYRWVRHKYN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1427", "evidence": [ { "id": "O54898", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54898#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O54898-1.1430.1430", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54898-1.1430.1430", "start_pos": 1430, "end_pos": 1430, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VQLFKGKFFVCQGEDTRNIT", "down_seq": "KSDCAEASYRWVRHKYNFDN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1430", "evidence": [ { "id": "O54898", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54898#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O54898-1.1427.1427", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54898-1.1666.1666", "start_pos": 1666, "end_pos": 1666, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LDLAIVLLSIMGITLEEIEV", "down_seq": "LSLPINPTIIRIMRVLRIAR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1666", "evidence": [ { "id": "O54898", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54898#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54898-1.173.173", "start_pos": 173, "end_pos": 173, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NRLDFFIVIAGMLEYSLDLQ", "down_seq": "VSFSAVRTVRVLRPLRAINR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn173", "evidence": [ { "id": "O54898", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54898#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54898-1.246.246", "start_pos": 246, "end_pos": 246, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GIVGVQLWAGLLRNRCFLPE", "down_seq": "FSLPLSVDLEPYYQTENEDE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn246", "evidence": [ { "id": "O54898", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54898#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54898-1.306.306", "start_pos": 306, "end_pos": 306, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PTLRGEGGGGPPCSLDYETY", "down_seq": "SSSNTTCVNWNQYYTNCSAG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn306", "evidence": [ { "id": "O54898", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54898#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O54898-1.310.310", "categories": [ "glycosylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O54898-1.322.322", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54898-1.310.310", "start_pos": 310, "end_pos": 310, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GEGGGGPPCSLDYETYNSSS", "down_seq": "TTCVNWNQYYTNCSAGEHNP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn310", "evidence": [ { "id": "O54898", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54898#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O54898-1.306.306", "categories": [ "glycosylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O54898-1.322.322", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54898-1.322.322", "start_pos": 322, "end_pos": 322, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YETYNSSSNTTCVNWNQYYT", "down_seq": "CSAGEHNPFKGAINFDNIGY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn322", "evidence": [ { "id": "O54898", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54898#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O54898-1.306.306", "categories": [ "glycosylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O54898-1.310.310", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54898-1.539.539", "start_pos": 539, "end_pos": 539, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PEIQDRDANGSRRLMLPPPS", "down_seq": "PTPSGGPPRGAESVHSFYHA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr539", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O54898-1.541.541", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54898-1.541.541", "start_pos": 541, "end_pos": 541, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IQDRDANGSRRLMLPPPSTP", "down_seq": "PSGGPPRGAESVHSFYHADC", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr541", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O54898-1.539.539", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54898-1.1118.1118", "start_pos": 1118, "end_pos": 1118, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" }, { "database": "iPTMnet", "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKRRSPSGERRSLLSGEGQE", "down_seq": "QDEEESSEEDRASPAGSDHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898" } ], "site_lbl": "Ser1118" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O54898-1.1124.1124", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O54898-1.1125.1125", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O54898-1.1124.1124", "start_pos": 1124, "end_pos": 1124, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" }, { "database": "iPTMnet", "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGERRSLLSGEGQESQDEEE", "down_seq": "SEEDRASPAGSDHRHRGSLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898" } ], "site_lbl": "Ser1124" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O54898-1.1118.1118", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O54898-1.1125.1125", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O54898-1.1125.1125", "start_pos": 1125, "end_pos": 1125, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" }, { "database": "iPTMnet", "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GERRSLLSGEGQESQDEEES", "down_seq": "EEDRASPAGSDHRHRGSLER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898" } ], "site_lbl": "Ser1125" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O54898-1.1118.1118", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O54898-1.1124.1124", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O54898-1.467.467", "start_pos": 467, "end_pos": 467, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" }, { "database": "iPTMnet", "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AARRLAQVSRAIGVRAGLLS", "down_seq": "PVARSGQEPQPSGSCTRSHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898" } ], "site_lbl": "Ser467" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O54898-1.716.716", "start_pos": 716, "end_pos": 716, "uniprot_canonical_ac": "O54898-1", "length": 2254, "uniprot_id": "CAC1G_RAT", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1G", "refseq_ac": "", "refseq_name": "", "gene_name": "Cacna1g", "gene_names_uniprotkb": "Cacna1g", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" }, { "database": "iPTMnet", "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FTQDAQHSDLRDPHSRRRQR", "down_seq": "LGPDAEPSSVLAFWRLICDT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O54898", "url": "https://www.uniprot.org/uniprotkb/O54898" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O54898", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54898" } ], "site_lbl": "Ser716" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1427", "end_pos": "1427" }, { "start_pos": "1430", "end_pos": "1430" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "246", "end_pos": "246" }, { "start_pos": "306", "end_pos": "306" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "541", "end_pos": "541" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1118", "end_pos": "1118" }, { "start_pos": "1124", "end_pos": "1124" }, { "start_pos": "1125", "end_pos": "1125" }, { "start_pos": "467", "end_pos": "467" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5PPN4-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "Q5PPN4-1", "length": 290, "uniprot_id": "CAH8_RAT", "protein_name": "Carbonic anhydrase-related protein", "refseq_ac": "NP_001009662", "refseq_name": "carbonic anhydrase-related protein", "gene_name": "Ca8", "gene_names_uniprotkb": "Ca8; Car8", "gene_names_refseq": "Ca8; Car8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5PPN4", "url": "https://www.uniprot.org/uniprotkb/Q5PPN4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5PPN4", "url": "https://www.uniprot.org/uniprotkb/Q5PPN4" }, { "database": "iPTMnet", "id": "Q5PPN4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PPN4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5PPN4", "url": "https://www.uniprot.org/uniprotkb/Q5PPN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5PPN4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PPN4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MADL", "down_seq": "FIEDAVAFPEKEEDEEEEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q5PPN4", "url": "https://www.uniprot.org/uniprotkb/Q5PPN4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5PPN4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5PPN4" } ], "site_lbl": "Ser5" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "5", "end_pos": "5" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2DD29-1.531.531", "start_pos": 531, "end_pos": 531, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SSGGTPLHSPLHTPRASPTG", "down_seq": "PGTTPPPSPGGGVGGAAWRS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr531", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "B2DD29-1.529.529", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "B2DD29-1.535.535", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2DD29-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "B2DD29", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=B2DD29" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2DD29", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=B2DD29", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "B2DD29", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=B2DD29" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2DD29-1.189.189", "start_pos": 189, "end_pos": 189, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "SAD: a presynaptic kinase associated with synaptic vesicles and the active zone cytomatrix that regulates neurotransmitter release.", "journal": "Neuron", "date": "2006", "authors": "Inoue E, Mochida S, Takagi H, Higa S, Deguchi-Tawarada M, Takao-Rikitsu E, Inoue M, Yao I, Takeuchi K, Kitajima I, Setou M, Ohtsuka T, Takai Y", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "reference": [ { "type": "PubMed", "id": "16630837", "url": "https://glygen.org/publication/PubMed/16630837" } ] }, { "title": "Activation of SAD kinase by Ca2+/calmodulin-dependent protein kinase kinase.", "journal": "Biochemistry", "date": "2008", "authors": "Fujimoto T, Yurimoto S, Hatano N, Nozaki N, Sueyoshi N, Kameshita I, Mizutani A, Mikoshiba K, Kobayashi R, Tokumitsu H", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "reference": [ { "type": "PubMed", "id": "18324781", "url": "https://glygen.org/publication/PubMed/18324781" } ] } ], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16630837", "url": "https://glygen.org/publication/PubMed/16630837", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18324781", "url": "https://glygen.org/publication/PubMed/18324781", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NIRIADFGMASLQVGDSLLE", "down_seq": "SCGSPHYACPEVIKGEKYDG", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Decreased autophosphorylation; when associated with A-193.", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "PubMed", "id": "16630837", "url": "https://glygen.org/publication/PubMed/16630837" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by LKB1", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" }, { "database": "PubMed", "id": "18324781", "url": "https://glygen.org/publication/PubMed/18324781" } ], "site_lbl": "Thr189" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "B2DD29-1.193.193", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2DD29-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "SAD: a presynaptic kinase associated with synaptic vesicles and the active zone cytomatrix that regulates neurotransmitter release.", "journal": "Neuron", "date": "2006", "authors": "Inoue E, Mochida S, Takagi H, Higa S, Deguchi-Tawarada M, Takao-Rikitsu E, Inoue M, Yao I, Takeuchi K, Kitajima I, Setou M, Ohtsuka T, Takai Y", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "reference": [ { "type": "PubMed", "id": "16630837", "url": "https://glygen.org/publication/PubMed/16630837" } ] } ], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16630837", "url": "https://glygen.org/publication/PubMed/16630837", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ADFGMASLQVGDSLLETSCG", "down_seq": "PHYACPEVIKGEKYDGRRAD", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Decreased autophosphorylation; when associated with A-189.", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "PubMed", "id": "16630837", "url": "https://glygen.org/publication/PubMed/16630837" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "site_lbl": "Ser193" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "B2DD29-1.189.189", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2DD29-1.63.63", "start_pos": 63, "end_pos": 63, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "SAD: a presynaptic kinase associated with synaptic vesicles and the active zone cytomatrix that regulates neurotransmitter release.", "journal": "Neuron", "date": "2006", "authors": "Inoue E, Mochida S, Takagi H, Higa S, Deguchi-Tawarada M, Takao-Rikitsu E, Inoue M, Yao I, Takeuchi K, Kitajima I, Setou M, Ohtsuka T, Takai Y", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "reference": [ { "type": "PubMed", "id": "16630837", "url": "https://glygen.org/publication/PubMed/16630837" } ] } ], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16630837", "url": "https://glygen.org/publication/PubMed/16630837", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "GQTGLVKLGVHCITGQKVAV", "down_seq": "IVNREKLSESVLMKVEREIA", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "PubMed", "id": "16630837", "url": "https://glygen.org/publication/PubMed/16630837" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2DD29-1.399.399", "start_pos": 399, "end_pos": 399, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKRVDSPMLSRHGKRRPERK", "down_seq": "MEVLSITDAGSGGSPVPTRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "site_lbl": "Ser399" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2DD29-1.443.443", "start_pos": 443, "end_pos": 443, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAQHSQRSRSVSGASTGLSS", "down_seq": "PLSSPRSPVFSFSPEPGVGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "site_lbl": "Ser443" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "B2DD29-1.447.447", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "B2DD29-1.450.450", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2DD29-1.447.447", "start_pos": 447, "end_pos": 447, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SQRSRSVSGASTGLSSSPLS", "down_seq": "PRSPVFSFSPEPGVGDEARG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "site_lbl": "Ser447" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "B2DD29-1.443.443", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "B2DD29-1.450.450", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2DD29-1.450.450", "start_pos": 450, "end_pos": 450, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRSVSGASTGLSSSPLSSPR", "down_seq": "PVFSFSPEPGVGDEARGGGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "site_lbl": "Ser450" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "B2DD29-1.443.443", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "B2DD29-1.447.447", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2DD29-1.508.508", "start_pos": 508, "end_pos": 508, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGEQPPPPSARSTPLPGPPG", "down_seq": "PRSSGGTPLHSPLHTPRASP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "site_lbl": "Ser508" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2DD29-1.529.529", "start_pos": 529, "end_pos": 529, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PRSSGGTPLHSPLHTPRASP", "down_seq": "GTPGTTPPPSPGGGVGGAAW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "site_lbl": "Thr529" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "B2DD29-1.531.531", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "B2DD29-1.535.535", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2DD29-1.535.535", "start_pos": 535, "end_pos": 535, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TPLHSPLHTPRASPTGTPGT", "down_seq": "PPPSPGGGVGGAAWRSRLNS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "site_lbl": "Thr535" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "B2DD29-1.529.529", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "B2DD29-1.531.531", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2DD29-1.583.583", "start_pos": 583, "end_pos": 583, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SPRFHRRKMQVPTAEEMSSL", "down_seq": "PESSPELAKRSWFGNFISLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "site_lbl": "Thr583" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "B2DD29-1.586.586", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "B2DD29-1.587.587", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "B2DD29-1.601.601", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2DD29-1.586.586", "start_pos": 586, "end_pos": 586, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FHRRKMQVPTAEEMSSLTPE", "down_seq": "SPELAKRSWFGNFISLDKEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "site_lbl": "Ser586" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "B2DD29-1.583.583", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "B2DD29-1.587.587", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "B2DD29-1.601.601", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2DD29-1.587.587", "start_pos": 587, "end_pos": 587, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HRRKMQVPTAEEMSSLTPES", "down_seq": "PELAKRSWFGNFISLDKEEQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "site_lbl": "Ser587" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "B2DD29-1.583.583", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "B2DD29-1.586.586", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "B2DD29-1.601.601", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2DD29-1.601.601", "start_pos": 601, "end_pos": 601, "uniprot_canonical_ac": "B2DD29-1", "length": 778, "uniprot_id": "BRSK1_RAT", "protein_name": "Serine/threonine-protein kinase BRSK1", "refseq_ac": "NP_001120809", "refseq_name": "serine/threonine-protein kinase BRSK1", "gene_name": "Brsk1", "gene_names_uniprotkb": "Brsk1; Sadb", "gene_names_refseq": "Brsk1; RGD1563268; Sad-b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLTPESSPELAKRSWFGNFI", "down_seq": "LDKEEQIFLVLKDKPLSSIK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2DD29", "url": "https://www.uniprot.org/uniprotkb/B2DD29" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2DD29", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2DD29" } ], "site_lbl": "Ser601" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "531", "end_pos": "531" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "189", "end_pos": "189" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "443", "end_pos": "443" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "450", "end_pos": "450" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "583", "end_pos": "583" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "587", "end_pos": "587" }, { "start_pos": "601", "end_pos": "601" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "B2DD29-1.583.583", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "B2DD29-1.586.586", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "B2DD29-1.587.587", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D4A055-2.182.182", "start_pos": 182, "end_pos": 182, "uniprot_canonical_ac": "D4A055-2", "length": 519, "uniprot_id": "CACB4_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-4", "refseq_ac": "NP_001099203", "refseq_name": "voltage-dependent L-type calcium channel subunit beta-4 isoform 2", "gene_name": "Cacnb4", "gene_names_uniprotkb": "Cacnb4", "gene_names_refseq": "CAB4; Cacnb4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQEQKRGRFHGGKSSGNSSS", "down_seq": "LGEMVSGTFRATPTTTAKQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" } ], "site_lbl": "Ser182" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "507", "end_pos": "507" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D4A055-2.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "D4A055-2", "length": 519, "uniprot_id": "CACB4_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-4", "refseq_ac": "NP_001099203", "refseq_name": "voltage-dependent L-type calcium channel subunit beta-4 isoform 2", "gene_name": "Cacnb4", "gene_names_uniprotkb": "Cacnb4", "gene_names_refseq": "CAB4; Cacnb4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" }, { "database": "iPTMnet", "id": "D4A055", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A055" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D4A055", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A055", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSQVARGTTTRRSRLKRSDG", "down_seq": "TTSTSFILRQGSADSYTSRP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D4A055", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A055" } ], "site_lbl": "Ser38" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "507", "end_pos": "507" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D4A055-2.410.410", "start_pos": 410, "end_pos": 410, "uniprot_canonical_ac": "D4A055-2", "length": 519, "uniprot_id": "CACB4_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-4", "refseq_ac": "NP_001099203", "refseq_name": "voltage-dependent L-type calcium channel subunit beta-4 isoform 2", "gene_name": "Cacnb4", "gene_names_uniprotkb": "Cacnb4", "gene_names_refseq": "CAB4; Cacnb4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LGEYLEAYWRATHTSSSTPM", "down_seq": "PLLGRNVGSTALSPYPTAIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" } ], "site_lbl": "Thr410" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "507", "end_pos": "507" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D4A055-2.447.447", "start_pos": 447, "end_pos": 447, "uniprot_canonical_ac": "D4A055-2", "length": 519, "uniprot_id": "CACB4_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-4", "refseq_ac": "NP_001099203", "refseq_name": "voltage-dependent L-type calcium channel subunit beta-4 isoform 2", "gene_name": "Cacnb4", "gene_names_uniprotkb": "Cacnb4", "gene_names_refseq": "CAB4; Cacnb4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" }, { "database": "iPTMnet", "id": "D4A055", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A055" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D4A055", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A055", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TAISGLQSQRMRHSNHSTEN", "down_seq": "PIERRSLMTSDENYHNERAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D4A055", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A055" } ], "site_lbl": "Ser447" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "507", "end_pos": "507" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D4A055-2.507.507", "start_pos": 507, "end_pos": 507, "uniprot_canonical_ac": "D4A055-2", "length": 519, "uniprot_id": "CACB4_RAT", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-4", "refseq_ac": "NP_001099203", "refseq_name": "voltage-dependent L-type calcium channel subunit beta-4 isoform 2", "gene_name": "Cacnb4", "gene_names_uniprotkb": "Cacnb4", "gene_names_refseq": "CAB4; Cacnb4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" }, { "database": "iPTMnet", "id": "D4A055", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A055" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D4A055", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A055", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VEEDYPDSYQDTYKPHRNRG", "down_seq": "PGGCSHDSRHRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A055", "url": "https://www.uniprot.org/uniprotkb/D4A055" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D4A055", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A055" } ], "site_lbl": "Ser507" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "447", "end_pos": "447" }, { "start_pos": "507", "end_pos": "507" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08839-1.308.308", "start_pos": 308, "end_pos": 308, "uniprot_canonical_ac": "O08839-1", "length": 588, "uniprot_id": "BIN1_RAT", "protein_name": "Myc box-dependent-interacting protein 1", "refseq_ac": "NP_446411", "refseq_name": "myc box-dependent-interacting protein 1", "gene_name": "Bin1", "gene_names_uniprotkb": "Bin1; Amph2; Amphl", "gene_names_refseq": "Bin1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" }, { "database": "iPTMnet", "id": "O08839", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08839" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O08839", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08839", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SAPEKGNKSPSPPPDGSPAA", "down_seq": "PEIRVNHEPEPASGASPGAT", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr308", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O08839", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08839" } ], "site_lbl": "Thr308" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "308", "end_pos": "308" }, { "start_pos": "410", "end_pos": "410" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "332", "end_pos": "332" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O08839-1.296.296", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O08839-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O08839-1.304.304", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O08839-1.324.324", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08839-1.410.410", "start_pos": 410, "end_pos": 410, "uniprot_canonical_ac": "O08839-1", "length": 588, "uniprot_id": "BIN1_RAT", "protein_name": "Myc box-dependent-interacting protein 1", "refseq_ac": "NP_446411", "refseq_name": "myc box-dependent-interacting protein 1", "gene_name": "Bin1", "gene_names_uniprotkb": "Bin1; Amph2; Amphl", "gene_names_refseq": "Bin1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SLLDLDFEPLPPVASPVKAP", "down_seq": "PSGQSIPWDLWEPTESQAGV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr410", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "308", "end_pos": "308" }, { "start_pos": "410", "end_pos": "410" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "332", "end_pos": "332" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08839-1.296.296", "start_pos": 296, "end_pos": 296, "uniprot_canonical_ac": "O08839-1", "length": 588, "uniprot_id": "BIN1_RAT", "protein_name": "Myc box-dependent-interacting protein 1", "refseq_ac": "NP_446411", "refseq_name": "myc box-dependent-interacting protein 1", "gene_name": "Bin1", "gene_names_uniprotkb": "Bin1; Amph2; Amphl", "gene_names_refseq": "Bin1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SNTFTVKAQPSDSAPEKGNK", "down_seq": "PSPPPDGSPAATPEIRVNHE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" } ], "site_lbl": "Ser296" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "308", "end_pos": "308" }, { "start_pos": "410", "end_pos": "410" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "332", "end_pos": "332" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O08839-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O08839-1.304.304", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O08839-1.308.308", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08839-1.298.298", "start_pos": 298, "end_pos": 298, "uniprot_canonical_ac": "O08839-1", "length": 588, "uniprot_id": "BIN1_RAT", "protein_name": "Myc box-dependent-interacting protein 1", "refseq_ac": "NP_446411", "refseq_name": "myc box-dependent-interacting protein 1", "gene_name": "Bin1", "gene_names_uniprotkb": "Bin1; Amph2; Amphl", "gene_names_refseq": "Bin1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" }, { "database": "iPTMnet", "id": "O08839", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08839" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O08839", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08839", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TFTVKAQPSDSAPEKGNKSP", "down_seq": "PPPDGSPAATPEIRVNHEPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O08839", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08839" } ], "site_lbl": "Ser298" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "308", "end_pos": "308" }, { "start_pos": "410", "end_pos": "410" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "332", "end_pos": "332" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O08839-1.296.296", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O08839-1.304.304", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O08839-1.308.308", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08839-1.304.304", "start_pos": 304, "end_pos": 304, "uniprot_canonical_ac": "O08839-1", "length": 588, "uniprot_id": "BIN1_RAT", "protein_name": "Myc box-dependent-interacting protein 1", "refseq_ac": "NP_446411", "refseq_name": "myc box-dependent-interacting protein 1", "gene_name": "Bin1", "gene_names_uniprotkb": "Bin1; Amph2; Amphl", "gene_names_refseq": "Bin1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" }, { "database": "iPTMnet", "id": "O08839", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08839" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O08839", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08839", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QPSDSAPEKGNKSPSPPPDG", "down_seq": "PAATPEIRVNHEPEPASGAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O08839", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08839" } ], "site_lbl": "Ser304" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "308", "end_pos": "308" }, { "start_pos": "410", "end_pos": "410" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "332", "end_pos": "332" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O08839-1.296.296", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O08839-1.298.298", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O08839-1.308.308", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O08839-1.324.324", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08839-1.324.324", "start_pos": 324, "end_pos": 324, "uniprot_canonical_ac": "O08839-1", "length": 588, "uniprot_id": "BIN1_RAT", "protein_name": "Myc box-dependent-interacting protein 1", "refseq_ac": "NP_446411", "refseq_name": "myc box-dependent-interacting protein 1", "gene_name": "Bin1", "gene_names_uniprotkb": "Bin1; Amph2; Amphl", "gene_names_refseq": "Bin1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" }, { "database": "iPTMnet", "id": "O08839", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08839" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O08839", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08839", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPAATPEIRVNHEPEPASGA", "down_seq": "PGATIPKSPSQLRKGPPVPP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O08839", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08839" } ], "site_lbl": "Ser324" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "308", "end_pos": "308" }, { "start_pos": "410", "end_pos": "410" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "332", "end_pos": "332" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O08839-1.304.304", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O08839-1.308.308", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O08839-1.332.332", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O08839-1.332.332", "start_pos": 332, "end_pos": 332, "uniprot_canonical_ac": "O08839-1", "length": 588, "uniprot_id": "BIN1_RAT", "protein_name": "Myc box-dependent-interacting protein 1", "refseq_ac": "NP_446411", "refseq_name": "myc box-dependent-interacting protein 1", "gene_name": "Bin1", "gene_names_uniprotkb": "Bin1; Amph2; Amphl", "gene_names_refseq": "Bin1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RVNHEPEPASGASPGATIPK", "down_seq": "PSQLRKGPPVPPPPKHTPSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08839", "url": "https://www.uniprot.org/uniprotkb/O08839" } ], "site_lbl": "Ser332" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "308", "end_pos": "308" }, { "start_pos": "410", "end_pos": "410" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "296", "end_pos": "296" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "332", "end_pos": "332" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O08839-1.324.324", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D4A631-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "D4A631-1", "length": 1846, "uniprot_id": "BIG1_RAT", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 1", "refseq_ac": "NP_001263985", "refseq_name": "brefeldin A-inhibited guanine nucleotide-exchange protein 1", "gene_name": "Arfgef1", "gene_names_uniprotkb": "Arfgef1", "gene_names_refseq": "Arfgef1; BIG1; RGD1560793", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DCLQKLIAYGHLTGSAPDST", "down_seq": "PGKKLIDRIIETICGCFQGP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr121", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1076", "end_pos": "1076" }, { "start_pos": "1563", "end_pos": "1563" }, { "start_pos": "1566", "end_pos": "1566" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D4A631-1.1076.1076", "start_pos": 1076, "end_pos": 1076, "uniprot_canonical_ac": "D4A631-1", "length": 1846, "uniprot_id": "BIG1_RAT", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 1", "refseq_ac": "NP_001263985", "refseq_name": "brefeldin A-inhibited guanine nucleotide-exchange protein 1", "gene_name": "Arfgef1", "gene_names_uniprotkb": "Arfgef1", "gene_names_refseq": "Arfgef1; BIG1; RGD1560793", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LIGTGVKPRYISGTVRGREG", "down_seq": "LTGTKDQAPDEFVGLGLVGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "site_lbl": "Ser1076" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1076", "end_pos": "1076" }, { "start_pos": "1563", "end_pos": "1563" }, { "start_pos": "1566", "end_pos": "1566" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D4A631-1.1563.1563", "start_pos": 1563, "end_pos": 1563, "uniprot_canonical_ac": "D4A631-1", "length": 1846, "uniprot_id": "BIG1_RAT", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 1", "refseq_ac": "NP_001263985", "refseq_name": "brefeldin A-inhibited guanine nucleotide-exchange protein 1", "gene_name": "Arfgef1", "gene_names_uniprotkb": "Arfgef1", "gene_names_refseq": "Arfgef1; BIG1; RGD1560793", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" }, { "database": "iPTMnet", "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGEAAPPSPSAMSEKQLDAI", "down_seq": "QKSVDIHDSAQPRSSDNRQQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631" } ], "site_lbl": "Ser1563" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1076", "end_pos": "1076" }, { "start_pos": "1563", "end_pos": "1563" }, { "start_pos": "1566", "end_pos": "1566" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "D4A631-1.1566.1566", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D4A631-1.1566.1566", "start_pos": 1566, "end_pos": 1566, "uniprot_canonical_ac": "D4A631-1", "length": 1846, "uniprot_id": "BIG1_RAT", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 1", "refseq_ac": "NP_001263985", "refseq_name": "brefeldin A-inhibited guanine nucleotide-exchange protein 1", "gene_name": "Arfgef1", "gene_names_uniprotkb": "Arfgef1", "gene_names_refseq": "Arfgef1; BIG1; RGD1560793", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" }, { "database": "iPTMnet", "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAPPSPSAMSEKQLDAISQK", "down_seq": "VDIHDSAQPRSSDNRQQAPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631" } ], "site_lbl": "Ser1566" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1076", "end_pos": "1076" }, { "start_pos": "1563", "end_pos": "1563" }, { "start_pos": "1566", "end_pos": "1566" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "D4A631-1.1563.1563", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D4A631-1.286.286", "start_pos": 286, "end_pos": 286, "uniprot_canonical_ac": "D4A631-1", "length": 1846, "uniprot_id": "BIG1_RAT", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 1", "refseq_ac": "NP_001263985", "refseq_name": "brefeldin A-inhibited guanine nucleotide-exchange protein 1", "gene_name": "Arfgef1", "gene_names_uniprotkb": "Arfgef1", "gene_names_refseq": "Arfgef1; BIG1; RGD1560793", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" }, { "database": "iPTMnet", "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DPQTHDVDKSLQDDIEPENG", "down_seq": "DISSAENEQTEADQATAAET", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631" } ], "site_lbl": "Ser286" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1076", "end_pos": "1076" }, { "start_pos": "1563", "end_pos": "1563" }, { "start_pos": "1566", "end_pos": "1566" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "D4A631-1.289.289", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "D4A631-1.290.290", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D4A631-1.289.289", "start_pos": 289, "end_pos": 289, "uniprot_canonical_ac": "D4A631-1", "length": 1846, "uniprot_id": "BIG1_RAT", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 1", "refseq_ac": "NP_001263985", "refseq_name": "brefeldin A-inhibited guanine nucleotide-exchange protein 1", "gene_name": "Arfgef1", "gene_names_uniprotkb": "Arfgef1", "gene_names_refseq": "Arfgef1; BIG1; RGD1560793", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" }, { "database": "iPTMnet", "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "THDVDKSLQDDIEPENGSDI", "down_seq": "SAENEQTEADQATAAETLSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631" } ], "site_lbl": "Ser289" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1076", "end_pos": "1076" }, { "start_pos": "1563", "end_pos": "1563" }, { "start_pos": "1566", "end_pos": "1566" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "D4A631-1.286.286", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "D4A631-1.290.290", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D4A631-1.290.290", "start_pos": 290, "end_pos": 290, "uniprot_canonical_ac": "D4A631-1", "length": 1846, "uniprot_id": "BIG1_RAT", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 1", "refseq_ac": "NP_001263985", "refseq_name": "brefeldin A-inhibited guanine nucleotide-exchange protein 1", "gene_name": "Arfgef1", "gene_names_uniprotkb": "Arfgef1", "gene_names_refseq": "Arfgef1; BIG1; RGD1560793", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" }, { "database": "iPTMnet", "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HDVDKSLQDDIEPENGSDIS", "down_seq": "AENEQTEADQATAAETLSKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D4A631", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D4A631" } ], "site_lbl": "Ser290" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1076", "end_pos": "1076" }, { "start_pos": "1563", "end_pos": "1563" }, { "start_pos": "1566", "end_pos": "1566" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "D4A631-1.286.286", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "D4A631-1.289.289", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D4A631-1.394.394", "start_pos": 394, "end_pos": 394, "uniprot_canonical_ac": "D4A631-1", "length": 1846, "uniprot_id": "BIG1_RAT", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 1", "refseq_ac": "NP_001263985", "refseq_name": "brefeldin A-inhibited guanine nucleotide-exchange protein 1", "gene_name": "Arfgef1", "gene_names_uniprotkb": "Arfgef1", "gene_names_refseq": "Arfgef1; BIG1; RGD1560793", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTPISAAYTPSLPDDRLSVS", "down_seq": "NDTQESGNSSGPSPGAKFSH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "site_lbl": "Ser394" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1076", "end_pos": "1076" }, { "start_pos": "1563", "end_pos": "1563" }, { "start_pos": "1566", "end_pos": "1566" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "D4A631-1.407.407", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D4A631-1.407.407", "start_pos": 407, "end_pos": 407, "uniprot_canonical_ac": "D4A631-1", "length": 1846, "uniprot_id": "BIG1_RAT", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 1", "refseq_ac": "NP_001263985", "refseq_name": "brefeldin A-inhibited guanine nucleotide-exchange protein 1", "gene_name": "Arfgef1", "gene_names_uniprotkb": "Arfgef1", "gene_names_refseq": "Arfgef1; BIG1; RGD1560793", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DDRLSVSSNDTQESGNSSGP", "down_seq": "PGAKFSHILQKDAFLVFRSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "site_lbl": "Ser407" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1076", "end_pos": "1076" }, { "start_pos": "1563", "end_pos": "1563" }, { "start_pos": "1566", "end_pos": "1566" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "D4A631-1.394.394", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D4A631-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "D4A631-1", "length": 1846, "uniprot_id": "BIG1_RAT", "protein_name": "Brefeldin A-inhibited guanine nucleotide-exchange protein 1", "refseq_ac": "NP_001263985", "refseq_name": "brefeldin A-inhibited guanine nucleotide-exchange protein 1", "gene_name": "Arfgef1", "gene_names_uniprotkb": "Arfgef1", "gene_names_refseq": "Arfgef1; BIG1; RGD1560793", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLRKACEVALEEIKVETEKQ", "down_seq": "PPHGEAKAGSGTLPPVKSKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D4A631", "url": "https://www.uniprot.org/uniprotkb/D4A631" } ], "site_lbl": "Ser52" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "121", "end_pos": "121" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1076", "end_pos": "1076" }, { "start_pos": "1563", "end_pos": "1563" }, { "start_pos": "1566", "end_pos": "1566" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "407", "end_pos": "407" }, { "start_pos": "52", "end_pos": "52" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z1Y3-1.190.190", "start_pos": 190, "end_pos": 190, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ENSRGPFPQELVRIRSDRDK", "down_seq": "LSLRYSVTGPGADQPPTGIF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn190", "evidence": [ { "id": "Q9Z1Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z1Y3-1.273.273", "start_pos": 273, "end_pos": 273, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IVINVIDMNDNRPEFLHQVW", "down_seq": "GSVPEGSKPGTYVMTVTAID", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn273", "evidence": [ { "id": "Q9Z1Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z1Y3-1.315.315", "start_pos": 315, "end_pos": 315, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DDPNALNGMLRYRILSQAPS", "down_seq": "PSPNMFTINNETGDIITVAA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr315", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q9Z1Y3-1.325.325", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z1Y3-1.325.325", "start_pos": 325, "end_pos": 325, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RYRILSQAPSTPSPNMFTIN", "down_seq": "ETGDIITVAAGLDREKVQQY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn325", "evidence": [ { "id": "Q9Z1Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9Z1Y3-1.315.315", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z1Y3-1.402.402", "start_pos": 402, "end_pos": 402, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "N-Glycosylation in isolated rat nerve terminals.", "journal": "Molecular omics", "date": "2021", "authors": "Matthies I, Abrahams JL, Jensen P, Oliveira T, Kolarich D, Larsen MR", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals", "journal": "Molecular Omics", "date": "2021", "authors": "Matthies I., Abrahams J.L., Jensen P., Oliveira T., Kolarich D., Larsen M.R.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "DOI", "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] } ], "crossref": [ { "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B", "database": "DOI", "categories": [ "Other" ] }, { "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FTAMTFYGEVPENRVDVIVA", "down_seq": "LTVTDKDQPHTPAWNAAYRI", "glycosylation": [ { "glytoucan_ac": "G19379ID", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn402", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "G88725PI", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn402", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn402", "evidence": [ { "id": "Q9Z1Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 2 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z1Y3-1.572.572", "start_pos": 572, "end_pos": 572, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QITTIAVLDRESPNVKNNIY", "down_seq": "ATFLASDNGIPPMSGTGTLQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn572", "evidence": [ { "id": "Q9Z1Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z1Y3-1.622.622", "start_pos": 622, "end_pos": 622, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "APQVLPQEAETCETPEPNSI", "down_seq": "ITALDYDIDPNAGPFAFDLP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn622", "evidence": [ { "id": "Q9Z1Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z1Y3-1.651.651", "start_pos": 651, "end_pos": 651, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DPNAGPFAFDLPLSPATIKR", "down_seq": "WTITRLNGDFAQLNLKIKFL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn651", "evidence": [ { "id": "Q9Z1Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z1Y3-1.692.692", "start_pos": 692, "end_pos": 692, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EAGIYEVPIVITDSGNPPKS", "down_seq": "ISILRVKVCQCDSNGDCTDV", "glycosylation": [ { "glytoucan_ac": "G02815KT", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn692", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G41247ZX", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn692", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G55220VL", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-692 ; ASN-692", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn692", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G80966KZ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-692 ; ASN-692", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn692", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn692", "evidence": [ { "id": "Q9Z1Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 4 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 4 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 4 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 4 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z1Y3-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9Z1Y3", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9Z1Y3" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z1Y3", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9Z1Y3", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "Q9Z1Y3", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9Z1Y3" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z1Y3-1.740.740", "start_pos": 740, "end_pos": 740, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Activity-induced protocadherin arcadlin regulates dendritic spine number by triggering N-cadherin endocytosis via TAO2beta and p38 MAP kinases.", "journal": "Neuron", "date": "2007", "authors": "Yasuda S, Tanaka H, Sugiura H, Okamura K, Sakaguchi T, Tran U, Takemiya T, Mizoguchi A, Yagita Y, Sakurai T, De Robertis EM, Yamagata K", "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "reference": [ { "type": "PubMed", "id": "17988630", "url": "https://glygen.org/publication/PubMed/17988630" } ] } ], "crossref": [ { "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17988630", "url": "https://glygen.org/publication/PubMed/17988630", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "LGTGTIIAILLCIIILLILV", "down_seq": "MFVVWMKRRDKERQAKQLLI", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "P", "comment": "Decrease in PCDH8-binding; alone or when associated with G-741.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" }, { "database": "PubMed", "id": "17988630", "url": "https://glygen.org/publication/PubMed/17988630" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9Z1Y3-1.741.741", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z1Y3-1.741.741", "start_pos": 741, "end_pos": 741, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Activity-induced protocadherin arcadlin regulates dendritic spine number by triggering N-cadherin endocytosis via TAO2beta and p38 MAP kinases.", "journal": "Neuron", "date": "2007", "authors": "Yasuda S, Tanaka H, Sugiura H, Okamura K, Sakaguchi T, Tran U, Takemiya T, Mizoguchi A, Yagita Y, Sakurai T, De Robertis EM, Yamagata K", "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "reference": [ { "type": "PubMed", "id": "17988630", "url": "https://glygen.org/publication/PubMed/17988630" } ] } ], "crossref": [ { "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17988630", "url": "https://glygen.org/publication/PubMed/17988630", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "GTGTIIAILLCIIILLILVL", "down_seq": "FVVWMKRRDKERQAKQLLID", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "G", "comment": "Decrease in PCDH8-binding; when associated with P-740.", "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" }, { "database": "PubMed", "id": "17988630", "url": "https://glygen.org/publication/PubMed/17988630" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9Z1Y3-1.740.740", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z1Y3-1.869.869", "start_pos": 869, "end_pos": 869, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PKD1 Promotes Functional Synapse Formation Coordinated with N-Cadherin in Hippocampus.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2018", "authors": "Cen C, Luo LD, Li WQ, Li G, Tian NX, Zheng G, Yin DM, Zou Y, Wang Y", "evidence": [ { "database": "iPTMnet", "id": "Q9Z1Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z1Y3" } ], "reference": [ { "type": "PubMed", "id": "29133434", "url": "https://glygen.org/publication/PubMed/29133434" } ] } ], "crossref": [ { "id": "Q9Z1Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z1Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29133434", "url": "https://glygen.org/publication/PubMed/29133434", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APPYDSLLVFDYEGSGSTAG", "down_seq": "LSSLNSSSSGGDQDYDYLND", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9Z1Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z1Y3" }, { "database": "PubMed", "id": "29133434", "url": "https://glygen.org/publication/PubMed/29133434" } ], "site_lbl": "Ser869" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9Z1Y3-1.871.871", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9Z1Y3-1.872.872", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z1Y3-1.871.871", "start_pos": 871, "end_pos": 871, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PKD1 Promotes Functional Synapse Formation Coordinated with N-Cadherin in Hippocampus.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2018", "authors": "Cen C, Luo LD, Li WQ, Li G, Tian NX, Zheng G, Yin DM, Zou Y, Wang Y", "evidence": [ { "database": "iPTMnet", "id": "Q9Z1Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z1Y3" } ], "reference": [ { "type": "PubMed", "id": "29133434", "url": "https://glygen.org/publication/PubMed/29133434" } ] } ], "crossref": [ { "id": "Q9Z1Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z1Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29133434", "url": "https://glygen.org/publication/PubMed/29133434", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PYDSLLVFDYEGSGSTAGSL", "down_seq": "SLNSSSSGGDQDYDYLNDWG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9Z1Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z1Y3" }, { "database": "PubMed", "id": "29133434", "url": "https://glygen.org/publication/PubMed/29133434" } ], "site_lbl": "Ser871" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9Z1Y3-1.869.869", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9Z1Y3-1.872.872", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z1Y3-1.872.872", "start_pos": 872, "end_pos": 872, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "PKD1 Promotes Functional Synapse Formation Coordinated with N-Cadherin in Hippocampus.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2018", "authors": "Cen C, Luo LD, Li WQ, Li G, Tian NX, Zheng G, Yin DM, Zou Y, Wang Y", "evidence": [ { "database": "iPTMnet", "id": "Q9Z1Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z1Y3" } ], "reference": [ { "type": "PubMed", "id": "29133434", "url": "https://glygen.org/publication/PubMed/29133434" } ] } ], "crossref": [ { "id": "Q9Z1Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z1Y3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29133434", "url": "https://glygen.org/publication/PubMed/29133434", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YDSLLVFDYEGSGSTAGSLS", "down_seq": "LNSSSSGGDQDYDYLNDWGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9Z1Y3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z1Y3" }, { "database": "PubMed", "id": "29133434", "url": "https://glygen.org/publication/PubMed/29133434" } ], "site_lbl": "Ser872" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9Z1Y3-1.869.869", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9Z1Y3-1.871.871", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z1Y3-1.96.96", "start_pos": 96, "end_pos": 96, "uniprot_canonical_ac": "Q9Z1Y3-1", "length": 906, "uniprot_id": "CADH2_RAT", "protein_name": "Cadherin-2", "refseq_ac": "NP_112623", "refseq_name": "cadherin-2 precursor", "gene_name": "Cdh2", "gene_names_uniprotkb": "Cdh2", "gene_names_refseq": "Cdh2; N-cadherin", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PADFKVDEDGTVYAVRSFPL", "down_seq": "AEQAKFLIYAQDKETQEKWQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z1Y3", "url": "https://www.uniprot.org/uniprotkb/Q9Z1Y3" } ], "site_lbl": "Ser96" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "572", "end_pos": "572" }, { "start_pos": "622", "end_pos": "622" }, { "start_pos": "651", "end_pos": "651" }, { "start_pos": "692", "end_pos": "692" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "740", "end_pos": "740" }, { "start_pos": "741", "end_pos": "741" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "869", "end_pos": "869" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Vimentin is important in the neural differentiation of PC12 cells promoted by sialylation.", "journal": "Glycoconjugate journal", "date": "2017", "authors": "Wu LH, Shao XT, Guo JX, Sun H, Chen Q, Pan J, Cai QQ, Dong YW, Chen ZY, Yan XM, Peng M, Zhong N, Wu XZ", "evidence": [ { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "27726058", "url": "https://glygen.org/publication/PubMed/27726058" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27726058", "url": "https://glygen.org/publication/PubMed/27726058", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RMFGGSGTSSRPSSNRSYVT", "down_seq": "STRTYSLGSALRPSTSRSLY", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr33", "evidence": [ { "id": "P31000", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P31000#ptm_processing" }, { "id": "27726058", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27726058" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P31000-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P31000-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P31000-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P31000-1.34.34", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P31000-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P31000-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P31000-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P31000-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P31000-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Vimentin is important in the neural differentiation of PC12 cells promoted by sialylation.", "journal": "Glycoconjugate journal", "date": "2017", "authors": "Wu LH, Shao XT, Guo JX, Sun H, Chen Q, Pan J, Cai QQ, Dong YW, Chen ZY, Yan XM, Peng M, Zhong N, Wu XZ", "evidence": [ { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "27726058", "url": "https://glygen.org/publication/PubMed/27726058" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27726058", "url": "https://glygen.org/publication/PubMed/27726058", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MFGGSGTSSRPSSNRSYVTT", "down_seq": "TRTYSLGSALRPSTSRSLYS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser34", "evidence": [ { "id": "P31000", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P31000#ptm_processing" }, { "id": "27726058", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27726058" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC; alternate", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser34" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P31000-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P31000-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P31000-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P31000-1.33.33", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P31000-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P31000-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P31000-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P31000-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P31000-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Vimentin is important in the neural differentiation of PC12 cells promoted by sialylation.", "journal": "Glycoconjugate journal", "date": "2017", "authors": "Wu LH, Shao XT, Guo JX, Sun H, Chen Q, Pan J, Cai QQ, Dong YW, Chen ZY, Yan XM, Peng M, Zhong N, Wu XZ", "evidence": [ { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "27726058", "url": "https://glygen.org/publication/PubMed/27726058" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27726058", "url": "https://glygen.org/publication/PubMed/27726058", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSTRSV", "down_seq": "SSSYRRMFGGSGTSSRPSSN", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser7", "evidence": [ { "id": "P31000", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P31000#ptm_processing" }, { "id": "27726058", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27726058" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA and PKC; alternate", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser7" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P31000-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P31000-1.3.3", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P31000-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P31000-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P31000-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P31000-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P31000-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P31000-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P31000-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P31000", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P31000" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B", "evidence": [ { "database": "O-GlcNAc Database", "id": "P31000", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P31000" } ], "reference": [ { "type": "PubMed", "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31000", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P31000", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162", "database": "PubMed", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P31000", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P31000" }, { "id": "34502162", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34502162" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P31000-1.3.3", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P31000-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P31000-1.7.7", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P31000-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P31000-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P31000-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P31000-1.20.20", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.458.459", "start_pos": 458, "end_pos": 459, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Nestin promotes the phosphorylation-dependent disassembly of vimentin intermediate filaments during mitosis.", "journal": "Molecular biology of the cell", "date": "2003", "authors": "Chou YH, Khuon S, Herrmann H, Goldman RD", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "12686602", "url": "https://glygen.org/publication/PubMed/12686602" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12686602", "url": "https://glygen.org/publication/PubMed/12686602", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "TS", "start_aa": "T", "up_seq": "SKRTLLIKTVETRDGQVINE", "down_seq": "QHHDDLE", "mutagenesis": [ { "sequence_org": "TS", "sequence_mut": "AA", "comment": "Induces loss of filamentous network when coexpressed with nestin.", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "12686602", "url": "https://glygen.org/publication/PubMed/12686602" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P31000-1.438.438", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P31000-1.446.446", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P31000-1.458.458", "categories": [ "phosphorylation_flag" ] }, { "distance": 0, "direction": "upstream", "id": "P31000-1.459.459", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Nestin promotes the phosphorylation-dependent disassembly of vimentin intermediate filaments during mitosis.", "journal": "Molecular biology of the cell", "date": "2003", "authors": "Chou YH, Khuon S, Herrmann H, Goldman RD", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "12686602", "url": "https://glygen.org/publication/PubMed/12686602" } ] }, { "title": "Biochemical differences between staurosporine-induced apoptosis and premature mitosis.", "journal": "Experimental cell research", "date": "1997", "authors": "Yoshida M, Usui T, Tsujimura K, Inagaki M, Beppu T, Horinouchi S", "evidence": [ { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "9168797", "url": "https://glygen.org/publication/PubMed/9168797" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12686602", "url": "https://glygen.org/publication/PubMed/12686602", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "9168797", "url": "https://glygen.org/publication/PubMed/9168797", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRTYSLGSALRPSTSRSLYS", "down_seq": "SPGGAYVTRSSAVRLRSSMP", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Retains filamentous network during mitosis when transfected alone and when coexpressed with nestin.", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "12686602", "url": "https://glygen.org/publication/PubMed/12686602" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "12686602", "url": "https://glygen.org/publication/PubMed/12686602" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" }, { "database": "PubMed", "id": "9168797", "url": "https://glygen.org/publication/PubMed/9168797" } ], "site_lbl": "Ser55" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P31000-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P31000-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P31000-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P31000-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P31000-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P31000-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P31000-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P31000-1.66.66", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P31000-1.72.72", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P31000-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSTRSVSSS", "down_seq": "YRRMFGGSGTSSRPSSNRSY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser10" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P31000-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P31000-1.3.3", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P31000-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P31000-1.7.7", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P31000-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P31000-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P31000-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P31000-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P31000-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.117.117", "start_pos": 117, "end_pos": 117, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KNTRTNEKVELQELNDRFAN", "down_seq": "IDKVRFLEQQNKILLAELEQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Tyr117" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.144.144", "start_pos": 144, "end_pos": 144, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEQQNKILLAELEQLKGQGK", "down_seq": "RLGDLYEEEMRELRRQVDQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "site_lbl": "Ser144" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "", "down_seq": "SSRPSSNRSYVTTSTRTYSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Thr20" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P31000-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P31000-1.3.3", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P31000-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P31000-1.7.7", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P31000-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P31000-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P31000-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P31000-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P31000-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P31000-1.33.33", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P31000-1.34.34", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P31000-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.214.214", "start_pos": 214, "end_pos": 214, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LQREEAESTLQSFRQDVDNA", "down_seq": "LARLDLERKVESLQEEIAFL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "site_lbl": "Ser214" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "P31000-1.226.226", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.226.226", "start_pos": 226, "end_pos": 226, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FRQDVDNASLARLDLERKVE", "down_seq": "LQEEIAFLKKLHDEEIQELQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser226" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P31000-1.214.214", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVSSSSYRRMFGGSGTSSRP", "down_seq": "SNRSYVTTSTRTYSLGSALR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser25" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P31000-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "P31000-1.7.7", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P31000-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P31000-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P31000-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P31000-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P31000-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P31000-1.33.33", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P31000-1.34.34", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P31000-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P31000-1.42.42", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VSSSSYRRMFGGSGTSSRPS", "down_seq": "NRSYVTTSTRTYSLGSALRP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser26" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P31000-1.7.7", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "P31000-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P31000-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P31000-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P31000-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P31000-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P31000-1.33.33", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P31000-1.34.34", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P31000-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P31000-1.42.42", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.299.299", "start_pos": 299, "end_pos": 299, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VAAKNLQEAEEWYKSKFADL", "down_seq": "EAANRNNDALRQAKQESNEY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser299" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.325.325", "start_pos": 325, "end_pos": 325, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NNDALRQAKQESNEYRRQVQ", "down_seq": "LTCEVDALKGTNESLERQMR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser325" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.39.39", "start_pos": 39, "end_pos": 39, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTSSRPSSNRSYVTTSTRTY", "down_seq": "LGSALRPSTSRSLYSSSPGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CaMK2, PKA, PKC and ROCK2", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser39" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P31000-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P31000-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P31000-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P31000-1.33.33", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P31000-1.34.34", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P31000-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P31000-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P31000-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P31000-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P31000-1.55.55", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P31000-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Involvement of calcium-dependent mechanisms in T3-induced phosphorylation of vimentin of immature rat testis.", "journal": "Life sciences", "date": "2005", "authors": "Zamoner A, Corbelini PF, Funchal C, Menegaz D, Silva FR, Pessoa-Pureur R", "evidence": [ { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "15985269", "url": "https://glygen.org/publication/PubMed/15985269" } ] } ], "crossref": [ { "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15985269", "url": "https://glygen.org/publication/PubMed/15985269", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MS", "down_seq": "RSVSSSSYRRMFGGSGTSSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" }, { "database": "PubMed", "id": "15985269", "url": "https://glygen.org/publication/PubMed/15985269" } ], "site_lbl": "Thr3" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P31000-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P31000-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P31000-1.7.7", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P31000-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P31000-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P31000-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P31000-1.20.20", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VKMALDIEIATYRKLLEGEE", "down_seq": "RISLPLPNFSSLNLRETNLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser409" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P31000-1.412.412", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P31000-1.419.419", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P31000-1.420.420", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P31000-1.426.426", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.412.412", "start_pos": 412, "end_pos": 412, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ALDIEIATYRKLLEGEESRI", "down_seq": "LPLPNFSSLNLRETNLESLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "site_lbl": "Ser412" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P31000-1.409.409", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P31000-1.419.419", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P31000-1.420.420", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P31000-1.426.426", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P31000-1.430.430", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.419.419", "start_pos": 419, "end_pos": 419, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TYRKLLEGEESRISLPLPNF", "down_seq": "SLNLRETNLESLPLVDTHSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "site_lbl": "Ser419" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P31000-1.409.409", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P31000-1.412.412", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P31000-1.420.420", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P31000-1.426.426", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P31000-1.430.430", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P31000-1.436.436", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P31000-1.438.438", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.420.420", "start_pos": 420, "end_pos": 420, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YRKLLEGEESRISLPLPNFS", "down_seq": "LNLRETNLESLPLVDTHSKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "site_lbl": "Ser420" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P31000-1.409.409", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P31000-1.412.412", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P31000-1.419.419", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P31000-1.426.426", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P31000-1.430.430", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P31000-1.436.436", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P31000-1.438.438", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.426.426", "start_pos": 426, "end_pos": 426, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GEESRISLPLPNFSSLNLRE", "down_seq": "NLESLPLVDTHSKRTLLIKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Thr426" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P31000-1.409.409", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P31000-1.412.412", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P31000-1.419.419", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P31000-1.420.420", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P31000-1.430.430", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P31000-1.436.436", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P31000-1.438.438", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P31000-1.446.446", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRPSSNRSYVTTSTRTYSLG", "down_seq": "ALRPSTSRSLYSSSPGGAYV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser42" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P31000-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P31000-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P31000-1.33.33", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P31000-1.34.34", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P31000-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P31000-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P31000-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P31000-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P31000-1.55.55", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P31000-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P31000-1.61.61", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.430.430", "start_pos": 430, "end_pos": 430, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RISLPLPNFSSLNLRETNLE", "down_seq": "LPLVDTHSKRTLLIKTVETR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "site_lbl": "Ser430" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P31000-1.412.412", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P31000-1.419.419", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P31000-1.420.420", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P31000-1.426.426", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P31000-1.436.436", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P31000-1.438.438", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P31000-1.446.446", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.436.436", "start_pos": 436, "end_pos": 436, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PNFSSLNLRETNLESLPLVD", "down_seq": "HSKRTLLIKTVETRDGQVIN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Thr436" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P31000-1.419.419", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P31000-1.420.420", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P31000-1.426.426", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P31000-1.430.430", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P31000-1.438.438", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P31000-1.446.446", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.438.438", "start_pos": 438, "end_pos": 438, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FSSLNLRETNLESLPLVDTH", "down_seq": "KRTLLIKTVETRDGQVINET", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser438" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P31000-1.419.419", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "P31000-1.420.420", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P31000-1.426.426", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P31000-1.430.430", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P31000-1.436.436", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P31000-1.446.446", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P31000-1.458.459", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P31000-1.458.458", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.446.446", "start_pos": 446, "end_pos": 446, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TNLESLPLVDTHSKRTLLIK", "down_seq": "VETRDGQVINETSQHHDDLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Thr446" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P31000-1.426.426", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P31000-1.430.430", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P31000-1.436.436", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P31000-1.438.438", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P31000-1.458.459", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P31000-1.458.458", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P31000-1.459.459", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.458.458", "start_pos": 458, "end_pos": 458, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SKRTLLIKTVETRDGQVINE", "down_seq": "SQHHDDLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Thr458" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P31000-1.438.438", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P31000-1.446.446", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P31000-1.458.459", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P31000-1.459.459", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.459.459", "start_pos": 459, "end_pos": 459, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRTLLIKTVETRDGQVINET", "down_seq": "QHHDDLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "site_lbl": "Ser459" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P31000-1.446.446", "categories": [ "phosphorylation_flag" ] }, { "distance": 0, "direction": "downstream", "id": "P31000-1.458.459", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P31000-1.458.458", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NRSYVTTSTRTYSLGSALRP", "down_seq": "TSRSLYSSSPGGAYVTRSSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P31000-1.33.33", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P31000-1.34.34", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P31000-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P31000-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P31000-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P31000-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P31000-1.55.55", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P31000-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P31000-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P31000-1.66.66", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SYVTTSTRTYSLGSALRPST", "down_seq": "RSLYSSSPGGAYVTRSSAVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser49" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P31000-1.33.33", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P31000-1.34.34", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P31000-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P31000-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P31000-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P31000-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P31000-1.55.55", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P31000-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P31000-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P31000-1.66.66", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTTSTRTYSLGSALRPSTSR", "down_seq": "LYSSSPGGAYVTRSSAVRLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "site_lbl": "Ser51" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P31000-1.33.33", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P31000-1.34.34", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P31000-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P31000-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P31000-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P31000-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P31000-1.55.55", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P31000-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P31000-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P31000-1.66.66", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.53.53", "start_pos": 53, "end_pos": 53, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TSTRTYSLGSALRPSTSRSL", "down_seq": "SSSPGGAYVTRSSAVRLRSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Tyr53" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P31000-1.33.33", "categories": [ "glycosylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "P31000-1.34.34", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P31000-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P31000-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P31000-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P31000-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P31000-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P31000-1.55.55", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P31000-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P31000-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P31000-1.66.66", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P31000-1.72.72", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P31000-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RTYSLGSALRPSTSRSLYSS", "down_seq": "PGGAYVTRSSAVRLRSSMPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "site_lbl": "Ser56" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P31000-1.39.39", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P31000-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P31000-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P31000-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P31000-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P31000-1.55.55", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P31000-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P31000-1.66.66", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P31000-1.72.72", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P31000-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSTR", "down_seq": "VSSSSYRRMFGGSGTSSRPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser5" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P31000-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P31000-1.3.3", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P31000-1.7.7", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P31000-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P31000-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P31000-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P31000-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P31000-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.61.61", "start_pos": 61, "end_pos": 61, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GSALRPSTSRSLYSSSPGGA", "down_seq": "VTRSSAVRLRSSMPGVRLLQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Tyr61" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P31000-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P31000-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P31000-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P31000-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P31000-1.55.55", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P31000-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P31000-1.66.66", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P31000-1.72.72", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P31000-1.73.73", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.66.66", "start_pos": 66, "end_pos": 66, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSTSRSLYSSSPGGAYVTRS", "down_seq": "AVRLRSSMPGVRLLQDSVDF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA and PKC", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser66" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P31000-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P31000-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P31000-1.51.51", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P31000-1.55.55", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P31000-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P31000-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P31000-1.72.72", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P31000-1.73.73", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P31000-1.83.83", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LYSSSPGGAYVTRSSAVRLR", "down_seq": "SMPGVRLLQDSVDFSLADAI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AURKB and ROCK2", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser72" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P31000-1.55.55", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "P31000-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P31000-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P31000-1.66.66", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P31000-1.73.73", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P31000-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P31000-1.87.87", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YSSSPGGAYVTRSSAVRLRS", "down_seq": "MPGVRLLQDSVDFSLADAIN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser73" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P31000-1.53.53", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "P31000-1.55.55", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P31000-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P31000-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P31000-1.66.66", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P31000-1.72.72", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P31000-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P31000-1.87.87", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.83.83", "start_pos": 83, "end_pos": 83, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] }, { "title": "Inhibition of PPARalpha attenuates vimentin phosphorylation on Ser-83 and collapse of vimentin filaments during exposure of rat Sertoli cells in vitro to DBP.", "journal": "Reproductive toxicology (Elmsford, N.Y.)", "date": "2014", "authors": "Zhang X, Liu W, Yang H, Tan L, Ao L, Liu J, Cao J, Cui Z", "evidence": [ { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" } ], "reference": [ { "type": "PubMed", "id": "25291543", "url": "https://glygen.org/publication/PubMed/25291543" } ] } ], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25291543", "url": "https://glygen.org/publication/PubMed/25291543", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRSSAVRLRSSMPGVRLLQD", "down_seq": "VDFSLADAINTEFKNTRTNE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P31000", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31000" }, { "database": "PubMed", "id": "25291543", "url": "https://glygen.org/publication/PubMed/25291543" } ], "site_lbl": "Ser83" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P31000-1.66.66", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P31000-1.72.72", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P31000-1.73.73", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P31000-1.87.87", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31000-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AVRLRSSMPGVRLLQDSVDF", "down_seq": "LADAINTEFKNTRTNEKVEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser87" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P31000-1.72.72", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P31000-1.73.73", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P31000-1.83.83", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSTRSVS", "down_seq": "SSYRRMFGGSGTSSRPSSNR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser8" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P31000-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P31000-1.3.3", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P31000-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P31000-1.7.7", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P31000-1.9.9", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P31000-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P31000-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P31000-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P31000-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31000-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "P31000-1", "length": 466, "uniprot_id": "VIME_RAT", "protein_name": "Vimentin", "refseq_ac": "NP_112402", "refseq_name": "vimentin", "gene_name": "Vim", "gene_names_uniprotkb": "Vim", "gene_names_refseq": "Vim", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSTRSVSS", "down_seq": "SYRRMFGGSGTSSRPSSNRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P31000", "url": "https://www.uniprot.org/uniprotkb/P31000" } ], "site_lbl": "Ser9" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "7", "end_pos": "7" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "458", "end_pos": "459" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "226", "end_pos": "226" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "412", "end_pos": "412" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "426", "end_pos": "426" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "458", "end_pos": "458" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "51", "end_pos": "51" }, { "start_pos": "53", "end_pos": "53" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P31000-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P31000-1.3.3", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P31000-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P31000-1.7.7", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P31000-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P31000-1.10.10", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P31000-1.20.20", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P31000-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P31000-1.26.26", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.131.131", "start_pos": 131, "end_pos": 131, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DGHFHNDDQDPSPPRKARHD", "down_seq": "PDASPPRRVRHGTPEPSPPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Thr131" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q4QQU1-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q4QQU1-1.144.144", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q4QQU1-1.148.148", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.135.135", "start_pos": 135, "end_pos": 135, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HNDDQDPSPPRKARHDTPDA", "down_seq": "PPRRVRHGTPEPSPPRRVRH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Ser135" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q4QQU1-1.131.131", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q4QQU1-1.144.144", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q4QQU1-1.148.148", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.144.144", "start_pos": 144, "end_pos": 144, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PRKARHDTPDASPPRRVRHG", "down_seq": "PEPSPPRRVRHDTPDPSPPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Thr144" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q4QQU1-1.131.131", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q4QQU1-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q4QQU1-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q4QQU1-1.157.157", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q4QQU1-1.161.161", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RHDTPDASPPRRVRHGTPEP", "down_seq": "PPRRVRHDTPDPSPPRRVRH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Ser148" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q4QQU1-1.131.131", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q4QQU1-1.135.135", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q4QQU1-1.144.144", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q4QQU1-1.157.157", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q4QQU1-1.161.161", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.157.157", "start_pos": 157, "end_pos": 157, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PRRVRHGTPEPSPPRRVRHD", "down_seq": "PDPSPPRRVRHDSPDPSPTR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Thr157" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q4QQU1-1.144.144", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q4QQU1-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q4QQU1-1.161.161", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q4QQU1-1.174.174", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.161.161", "start_pos": 161, "end_pos": 161, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RHGTPEPSPPRRVRHDTPDP", "down_seq": "PPRRVRHDSPDPSPTRRGHD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Ser161" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q4QQU1-1.144.144", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q4QQU1-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q4QQU1-1.157.157", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q4QQU1-1.174.174", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.174.174", "start_pos": 174, "end_pos": 174, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RHDTPDPSPPRRVRHDSPDP", "down_seq": "PTRRGHDSPDPSPTRRVHHD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser174" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q4QQU1-1.157.157", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q4QQU1-1.161.161", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q4QQU1-1.182.182", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q4QQU1-1.186.186", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.182.182", "start_pos": 182, "end_pos": 182, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPRRVRHDSPDPSPTRRGHD", "down_seq": "PDPSPTRRVHHDSPDPSPPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Ser182" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q4QQU1-1.174.174", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q4QQU1-1.186.186", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.186.186", "start_pos": 186, "end_pos": 186, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VRHDSPDPSPTRRGHDSPDP", "down_seq": "PTRRVHHDSPDPSPPRRVRH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Ser186" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q4QQU1-1.174.174", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q4QQU1-1.182.182", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TRRVHHDSPDPSPPRRVRHD", "down_seq": "PDPSPPRRVRHDTPDPSPPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Thr208" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q4QQU1-1.212.212", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q4QQU1-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q4QQU1-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.212.212", "start_pos": 212, "end_pos": 212, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HHDSPDPSPPRRVRHDTPDP", "down_seq": "PPRRVRHDTPDPSPPRRVRH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Ser212" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q4QQU1-1.208.208", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q4QQU1-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q4QQU1-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.221.221", "start_pos": 221, "end_pos": 221, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PRRVRHDTPDPSPPRRVRHD", "down_seq": "PDPSPPRRVRHDSDASPPRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Thr221" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q4QQU1-1.208.208", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q4QQU1-1.212.212", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q4QQU1-1.225.225", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q4QQU1-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q4QQU1-1.237.237", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RHDTPDPSPPRRVRHDTPDP", "down_seq": "PPRRVRHDSDASPPRRSHRN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Ser225" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q4QQU1-1.208.208", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q4QQU1-1.212.212", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q4QQU1-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q4QQU1-1.234.234", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q4QQU1-1.237.237", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.234.234", "start_pos": 234, "end_pos": 234, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PRRVRHDTPDPSPPRRVRHD", "down_seq": "DASPPRRSHRNSSAVSPKRG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser234" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q4QQU1-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q4QQU1-1.225.225", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q4QQU1-1.237.237", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VRHDTPDPSPPRRVRHDSDA", "down_seq": "PPRRSHRNSSAVSPKRGHHG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser237" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q4QQU1-1.221.221", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q4QQU1-1.225.225", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q4QQU1-1.234.234", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.258.258", "start_pos": 258, "end_pos": 258, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPRRSHRNSSAVSPKRGHHG", "down_seq": "SGTSSPRQAHNHSPAAAQHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser258" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q4QQU1-1.259.259", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q4QQU1-1.263.263", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q4QQU1-1.271.271", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.259.259", "start_pos": 259, "end_pos": 259, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PRRSHRNSSAVSPKRGHHGS", "down_seq": "GTSSPRQAHNHSPAAAQHRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser259" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q4QQU1-1.258.258", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q4QQU1-1.263.263", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q4QQU1-1.271.271", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.263.263", "start_pos": 263, "end_pos": 263, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HRNSSAVSPKRGHHGSSGTS", "down_seq": "PRQAHNHSPAAAQHRRTLDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser263" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q4QQU1-1.258.258", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q4QQU1-1.259.259", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q4QQU1-1.271.271", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q4QQU1-1.283.283", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.271.271", "start_pos": 271, "end_pos": 271, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PKRGHHGSSGTSSPRQAHNH", "down_seq": "PAAAQHRRTLDSSGAQHHRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser271" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q4QQU1-1.258.258", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q4QQU1-1.259.259", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q4QQU1-1.263.263", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q4QQU1-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q4QQU1-1.284.284", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.283.283", "start_pos": 283, "end_pos": 283, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPRQAHNHSPAAAQHRRTLD", "down_seq": "SGAQHHRRARHDSPDLELPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser283" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q4QQU1-1.263.263", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q4QQU1-1.271.271", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q4QQU1-1.284.284", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q4QQU1-1.296.296", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.284.284", "start_pos": 284, "end_pos": 284, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PRQAHNHSPAAAQHRRTLDS", "down_seq": "GAQHHRRARHDSPDLELPKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser284" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q4QQU1-1.271.271", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q4QQU1-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q4QQU1-1.296.296", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.296.296", "start_pos": 296, "end_pos": 296, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QHRRTLDSSGAQHHRRARHD", "down_seq": "PDLELPKAKSSKAAERPSSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Ser296" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q4QQU1-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q4QQU1-1.284.284", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.340.340", "start_pos": 340, "end_pos": 340, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QSGLGPPHPSLSMNSKYEHD", "down_seq": "DLSPPRKRQAKAHFGAKKQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser340" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q4QQU1-1.343.343", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.343.343", "start_pos": 343, "end_pos": 343, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGPPHPSLSMNSKYEHDSDL", "down_seq": "PPRKRQAKAHFGAKKQLDSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4QQU1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4QQU1" } ], "site_lbl": "Ser343" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q4QQU1-1.340.340", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4QQU1-1.370.370", "start_pos": 370, "end_pos": 370, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKAHFGAKKQLDSKGVCQKA", "down_seq": "DSDLSPPRKNSKSGHQDSDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser370" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q4QQU1-1.372.372", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q4QQU1-1.375.375", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.372.372", "start_pos": 372, "end_pos": 372, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AHFGAKKQLDSKGVCQKASD", "down_seq": "DLSPPRKNSKSGHQDSDSDL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser372" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q4QQU1-1.370.370", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q4QQU1-1.375.375", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.375.375", "start_pos": 375, "end_pos": 375, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GAKKQLDSKGVCQKASDSDL", "down_seq": "PPRKNSKSGHQDSDSDLSPP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser375" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q4QQU1-1.370.370", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q4QQU1-1.372.372", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSDLSPPRNRPRRQSSDSDL", "down_seq": "PPRRRQRTKSSDSDLSPSRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser409" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q4QQU1-1.425.425", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.425.425", "start_pos": 425, "end_pos": 425, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSDLSPPRRRQRTKSSDSDL", "down_seq": "PSRRSPRSGKKTPHMYSGAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Ser425" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q4QQU1-1.409.409", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4QQU1-1.511.511", "start_pos": 511, "end_pos": 511, "uniprot_canonical_ac": "Q4QQU1-1", "length": 636, "uniprot_id": "BUD13_RAT", "protein_name": "BUD13 homolog", "refseq_ac": "NP_001020448", "refseq_name": "BUD13 homolog", "gene_name": "Bud13", "gene_names_uniprotkb": "Bud13", "gene_names_refseq": "Bud13; RGD1308076", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KLERLEQRRKAEKDSERDEL", "down_seq": "AQWGKGLAQSRQQQQNVEDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q4QQU1", "url": "https://www.uniprot.org/uniprotkb/Q4QQU1" } ], "site_lbl": "Tyr511" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "135", "end_pos": "135" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "161", "end_pos": "161" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "182", "end_pos": "182" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "225", "end_pos": "225" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "296", "end_pos": "296" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "370", "end_pos": "370" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "511", "end_pos": "511" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O08557-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "O08557-1", "length": 285, "uniprot_id": "DDAH1_RAT", "protein_name": "N(G),N(G)-dimethylarginine dimethylaminohydrolase 1", "refseq_ac": "NP_071633", "refseq_name": "N(G),N(G)-dimethylarginine dimethylaminohydrolase 1", "gene_name": "Ddah1", "gene_names_uniprotkb": "Ddah1; Ddah", "gene_names_refseq": "Ddah1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O08557", "url": "https://www.uniprot.org/uniprotkb/O08557" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O08557", "url": "https://www.uniprot.org/uniprotkb/O08557" }, { "database": "iPTMnet", "id": "O08557", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08557" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O08557", "url": "https://www.uniprot.org/uniprotkb/O08557", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O08557", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08557", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATHAVVRAPPESLCRHALRR", "down_seq": "QGEEVDFARAERQHQLYVGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08557", "url": "https://www.uniprot.org/uniprotkb/O08557" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O08557", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08557" } ], "site_lbl": "Ser33" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P14668-1.35.35", "start_pos": 35, "end_pos": 35, "uniprot_canonical_ac": "P14668-1", "length": 319, "uniprot_id": "ANXA5_RAT", "protein_name": "Annexin A5", "refseq_ac": "NP_037264", "refseq_name": "annexin A5", "gene_name": "Anxa5", "gene_names_uniprotkb": "Anxa5; Anx5", "gene_names_refseq": "Anx5; Anxa5; CPB-I; LC5", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P14668", "url": "https://www.uniprot.org/uniprotkb/P14668" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P14668", "url": "https://www.uniprot.org/uniprotkb/P14668" }, { "database": "iPTMnet", "id": "P14668", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14668" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P14668", "url": "https://www.uniprot.org/uniprotkb/P14668", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P14668", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14668", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRADAEVLRKAMKGLGTDED", "down_seq": "ILNLLTARSNAQRQQIAEEF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P14668", "url": "https://www.uniprot.org/uniprotkb/P14668" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P14668", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P14668" } ], "site_lbl": "Ser35" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "35", "end_pos": "35" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P27139-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P27139-1", "length": 260, "uniprot_id": "CAH2_RAT", "protein_name": "Carbonic anhydrase 2", "refseq_ac": "NP_062164", "refseq_name": "carbonic anhydrase 2", "gene_name": "Ca2", "gene_names_uniprotkb": "Ca2", "gene_names_refseq": "Ca2; Car2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B", "evidence": [ { "database": "O-GlcNAc Database", "id": "P27139", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P27139" } ], "reference": [ { "type": "PubMed", "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162" } ] } ], "crossref": [ { "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P27139", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P27139", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "34502162", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34502162" }, { "id": "P27139", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P27139" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P27139-1.2.2", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P27139-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "P27139-1", "length": 260, "uniprot_id": "CAH2_RAT", "protein_name": "Carbonic anhydrase 2", "refseq_ac": "NP_062164", "refseq_name": "carbonic anhydrase 2", "gene_name": "Ca2", "gene_names_uniprotkb": "Ca2", "gene_names_refseq": "Ca2; Car2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IFLKIGPASQGLQKITEALH", "down_seq": "IKTKGKRAAFANFDPCSLLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139" } ], "site_lbl": "Ser165" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P27139-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "P27139-1", "length": 260, "uniprot_id": "CAH2_RAT", "protein_name": "Carbonic anhydrase 2", "refseq_ac": "NP_062164", "refseq_name": "carbonic anhydrase 2", "gene_name": "Ca2", "gene_names_uniprotkb": "Ca2", "gene_names_refseq": "Ca2; Car2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139" }, { "database": "iPTMnet", "id": "P27139", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27139" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P27139", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27139", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEPITVSSEQMSHFRKLNFN", "down_seq": "EGEAEELMVDNWRPAQPLKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P27139", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27139" } ], "site_lbl": "Ser232" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P27139-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "P27139-1", "length": 260, "uniprot_id": "CAH2_RAT", "protein_name": "Carbonic anhydrase 2", "refseq_ac": "NP_062164", "refseq_name": "carbonic anhydrase 2", "gene_name": "Ca2", "gene_names_uniprotkb": "Ca2", "gene_names_refseq": "Ca2; Car2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139" }, { "database": "iPTMnet", "id": "P27139", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27139" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P27139", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27139", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "M", "down_seq": "HHWGYSKSNGPENWHKEFPI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P27139", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27139" } ], "site_lbl": "Ser2" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P27139-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P27139-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "P27139-1", "length": 260, "uniprot_id": "CAH2_RAT", "protein_name": "Carbonic anhydrase 2", "refseq_ac": "NP_062164", "refseq_name": "carbonic anhydrase 2", "gene_name": "Ca2", "gene_names_uniprotkb": "Ca2", "gene_names_refseq": "Ca2; Car2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NVEFDDSQDFAVLKEGPLSG", "down_seq": "YRLIQFHFHWGSSDGQGSEH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P27139", "url": "https://www.uniprot.org/uniprotkb/P27139" } ], "site_lbl": "Ser87" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "165", "end_pos": "165" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30543-1.142.142", "start_pos": 142, "end_pos": 142, "uniprot_canonical_ac": "P30543-1", "length": 410, "uniprot_id": "AA2AR_RAT", "protein_name": "Adenosine receptor A2a", "refseq_ac": "NP_445746", "refseq_name": "adenosine receptor A2a isoform A2AR", "gene_name": "Adora2a", "gene_names_uniprotkb": "Adora2a", "gene_names_refseq": "A2ar; ADENO; Adora2a; Adora2l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30543", "url": "https://www.uniprot.org/uniprotkb/P30543" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30543", "url": "https://www.uniprot.org/uniprotkb/P30543", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IAICWVLSFAIGLTPMLGWN", "down_seq": "CSQKDGNSTKTCGEGRVTCL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn142", "evidence": [ { "id": "P30543", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P30543#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "149", "end_pos": "149" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P30543-1.149.149", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P30543-1.149.149", "start_pos": 149, "end_pos": 149, "uniprot_canonical_ac": "P30543-1", "length": 410, "uniprot_id": "AA2AR_RAT", "protein_name": "Adenosine receptor A2a", "refseq_ac": "NP_445746", "refseq_name": "adenosine receptor A2a isoform A2AR", "gene_name": "Adora2a", "gene_names_uniprotkb": "Adora2a", "gene_names_refseq": "A2ar; ADENO; Adora2a; Adora2l1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P30543", "url": "https://www.uniprot.org/uniprotkb/P30543" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P30543", "url": "https://www.uniprot.org/uniprotkb/P30543", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SFAIGLTPMLGWNNCSQKDG", "down_seq": "STKTCGEGRVTCLFEDVVPM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn149", "evidence": [ { "id": "P30543", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P30543#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "142", "end_pos": "142" }, { "start_pos": "149", "end_pos": "149" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P30543-1.142.142", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P35426-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "P35426-1", "length": 303, "uniprot_id": "CDK4_RAT", "protein_name": "Cyclin-dependent kinase 4", "refseq_ac": "NP_446045", "refseq_name": "cyclin-dependent kinase 4 isoform 1", "gene_name": "Cdk4", "gene_names_uniprotkb": "Cdk4", "gene_names_refseq": "Cdk4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35426", "url": "https://www.uniprot.org/uniprotkb/P35426" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P35426", "url": "https://www.uniprot.org/uniprotkb/P35426", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GTVKLADFGLARIYSYQMAL", "down_seq": "PVVVTLWYRAPEVLLQSTYA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by CAK", "evidence": [ { "database": "UniProtKB", "id": "P35426", "url": "https://www.uniprot.org/uniprotkb/P35426" } ], "site_lbl": "Thr172" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "300", "end_pos": "300" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P35426-1.300.300", "start_pos": 300, "end_pos": 300, "uniprot_canonical_ac": "P35426-1", "length": 303, "uniprot_id": "CDK4_RAT", "protein_name": "Cyclin-dependent kinase 4", "refseq_ac": "NP_446045", "refseq_name": "cyclin-dependent kinase 4 isoform 1", "gene_name": "Cdk4", "gene_names_uniprotkb": "Cdk4", "gene_names_refseq": "Cdk4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35426", "url": "https://www.uniprot.org/uniprotkb/P35426" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P35426", "url": "https://www.uniprot.org/uniprotkb/P35426" }, { "database": "iPTMnet", "id": "P35426", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35426" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P35426", "url": "https://www.uniprot.org/uniprotkb/P35426", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P35426", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35426", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLKRISAFRALQHSYLHKEE", "down_seq": "DPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P35426", "url": "https://www.uniprot.org/uniprotkb/P35426" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P35426", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35426" } ], "site_lbl": "Ser300" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "172", "end_pos": "172" }, { "start_pos": "300", "end_pos": "300" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P35565-1.553.553", "start_pos": 553, "end_pos": 553, "uniprot_canonical_ac": "P35565-1", "length": 591, "uniprot_id": "CALX_RAT", "protein_name": "Calnexin", "refseq_ac": "NP_742005", "refseq_name": "calnexin precursor", "gene_name": "Canx", "gene_names_uniprotkb": "Canx", "gene_names_refseq": "Canx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565" }, { "database": "iPTMnet", "id": "P35565", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35565" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P35565", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35565", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEKNKGDEEEEEEKLEEKQK", "down_seq": "DAEEDGGTGSQDEEDSKPKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P35565", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35565" } ], "site_lbl": "Ser553" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "553", "end_pos": "553" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "582", "end_pos": "582" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "P35565-1.561.561", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P35565-1.563.563", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P35565-1.561.561", "start_pos": 561, "end_pos": 561, "uniprot_canonical_ac": "P35565-1", "length": 591, "uniprot_id": "CALX_RAT", "protein_name": "Calnexin", "refseq_ac": "NP_742005", "refseq_name": "calnexin precursor", "gene_name": "Canx", "gene_names_uniprotkb": "Canx", "gene_names_refseq": "Canx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EEEEEKLEEKQKSDAEEDGG", "down_seq": "GSQDEEDSKPKAEEDEILNR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565" } ], "site_lbl": "Thr561" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "553", "end_pos": "553" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "582", "end_pos": "582" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P35565-1.553.553", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P35565-1.563.563", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P35565-1.563.563", "start_pos": 563, "end_pos": 563, "uniprot_canonical_ac": "P35565-1", "length": 591, "uniprot_id": "CALX_RAT", "protein_name": "Calnexin", "refseq_ac": "NP_742005", "refseq_name": "calnexin precursor", "gene_name": "Canx", "gene_names_uniprotkb": "Canx", "gene_names_refseq": "Canx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565" }, { "database": "iPTMnet", "id": "P35565", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35565" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] }, { "title": "Phosphorylation by CK2 and MAPK enhances calnexin association with ribosomes.", "journal": "The EMBO journal", "date": "1999", "authors": "Chevet E, Wong HN, Gerber D, Cochet C, Fazel A, Cameron PH, Gushue JN, Thomas DY, Bergeron JJ", "evidence": [ { "database": "UniProtKB", "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565" }, { "database": "iPTMnet", "id": "P35565", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35565" } ], "reference": [ { "type": "PubMed", "id": "10393181", "url": "https://glygen.org/publication/PubMed/10393181" } ] } ], "crossref": [ { "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P35565", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35565", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "10393181", "url": "https://glygen.org/publication/PubMed/10393181", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEEKLEEKQKSDAEEDGGTG", "down_seq": "QDEEDSKPKAEEDEILNRSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MAPK3", "evidence": [ { "database": "UniProtKB", "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565" }, { "database": "iPTMnet", "id": "P35565", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35565" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "PubMed", "id": "10393181", "url": "https://glygen.org/publication/PubMed/10393181" } ], "site_lbl": "Ser563" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "553", "end_pos": "553" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "582", "end_pos": "582" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P35565-1.553.553", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P35565-1.561.561", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P35565-1.582.582", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P35565-1.582.582", "start_pos": 582, "end_pos": 582, "uniprot_canonical_ac": "P35565-1", "length": 591, "uniprot_id": "CALX_RAT", "protein_name": "Calnexin", "refseq_ac": "NP_742005", "refseq_name": "calnexin precursor", "gene_name": "Canx", "gene_names_uniprotkb": "Canx", "gene_names_refseq": "Canx", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565" }, { "database": "iPTMnet", "id": "P35565", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35565" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P35565", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35565", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSQDEEDSKPKAEEDEILNR", "down_seq": "PRNRKPRRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P35565", "url": "https://www.uniprot.org/uniprotkb/P35565" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P35565", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P35565" } ], "site_lbl": "Ser582" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "553", "end_pos": "553" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "563", "end_pos": "563" }, { "start_pos": "582", "end_pos": "582" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P35565-1.563.563", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48675-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Interplay Between Phosphorylation and O-GlcNAcylation of Sarcomeric Proteins in Ischemic Heart Failure.", "journal": "Frontiers in endocrinology", "date": "2018", "authors": "Mercier T, Bouvet M, Dubois-Deruy E, Dechaumes A, Beseme O, Richard V, Mulder P, Pinet F", "evidence": [ { "database": "O-GlcNAc Database", "id": "P48675", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P48675" } ], "reference": [ { "type": "PubMed", "id": "30344511", "url": "https://glygen.org/publication/PubMed/30344511" } ] }, { "title": "Increasing O-GlcNAcylation level on organ culture of soleus modulates the calcium activation parameters of muscle fibers.", "journal": "PloS one", "date": "2012", "authors": "Cieniewski-Bernard C, Montel V, Berthoin S, Bastide B", "evidence": [ { "database": "O-GlcNAc Database", "id": "P48675", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P48675" } ], "reference": [ { "type": "PubMed", "id": "23110217", "url": "https://glygen.org/publication/PubMed/23110217" } ] }, { "title": "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B", "evidence": [ { "database": "O-GlcNAc Database", "id": "P48675", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P48675" } ], "reference": [ { "type": "PubMed", "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162" } ] } ], "crossref": [ { "id": "30344511", "url": "https://glygen.org/publication/PubMed/30344511", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P48675", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P48675", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "23110217", "url": "https://glygen.org/publication/PubMed/23110217", "database": "PubMed", "categories": [ "Other" ] }, { "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162", "database": "PubMed", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "30344511", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/30344511" }, { "id": "P48675", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P48675" }, { "id": "23110217", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23110217" }, { "id": "34502162", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34502162" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P48675-1.7.7", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P48675-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P48675-1.17.17", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48675-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSQAYSSSQRV", "down_seq": "SYRRTFGGAPGFSLGSPLSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AURKB", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "site_lbl": "Ser12" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P48675-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P48675-1.7.7", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P48675-1.17.17", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P48675-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P48675-1.28.28", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P48675-1.31.31", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P48675-1.32.32", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48675-1.17.17", "start_pos": 17, "end_pos": 17, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MSQAYSSSQRVSSYRR", "down_seq": "FGGAPGFSLGSPLSSPVFPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by AURKB and ROCK1", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "site_lbl": "Thr17" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P48675-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P48675-1.7.7", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P48675-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P48675-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P48675-1.28.28", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P48675-1.31.31", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P48675-1.32.32", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48675-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YSSSQRVSSYRRTFGGAPGF", "down_seq": "LGSPLSSPVFPRAGFGTKGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "site_lbl": "Ser25" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P48675-1.7.7", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P48675-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P48675-1.17.17", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P48675-1.28.28", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P48675-1.31.31", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P48675-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P48675-1.45.45", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48675-1.289.289", "start_pos": 289, "end_pos": 289, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LTAALRDIRAQYETIAAKNI", "down_seq": "EAEEWYKSKVSDLTQAANKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "site_lbl": "Ser289" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48675-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SQRVSSYRRTFGGAPGFSLG", "down_seq": "PLSSPVFPRAGFGTKGSSSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CDK1", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ], "site_lbl": "Ser28" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P48675-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P48675-1.17.17", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P48675-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P48675-1.31.31", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P48675-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P48675-1.45.45", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48675-1.31.31", "start_pos": 31, "end_pos": 31, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VSSYRRTFGGAPGFSLGSPL", "down_seq": "SPVFPRAGFGTKGSSSSVTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "site_lbl": "Ser31" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P48675-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P48675-1.17.17", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P48675-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P48675-1.28.28", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P48675-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P48675-1.45.45", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48675-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSYRRTFGGAPGFSLGSPLS", "down_seq": "PVFPRAGFGTKGSSSSVTSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CDK1", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ], "site_lbl": "Ser32" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P48675-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "P48675-1.17.17", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P48675-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P48675-1.28.28", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P48675-1.31.31", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P48675-1.45.45", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48675-1.357.357", "start_pos": 357, "end_pos": 357, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKGTNDSLMRQMRELEDRFA", "down_seq": "EASGYQDNIARLEEEIRHLK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "site_lbl": "Ser357" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P48675-1.360.360", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48675-1.360.360", "start_pos": 360, "end_pos": 360, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TNDSLMRQMRELEDRFASEA", "down_seq": "GYQDNIARLEEEIRHLKDEM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "site_lbl": "Ser360" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P48675-1.357.357", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48675-1.423.423", "start_pos": 423, "end_pos": 423, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TYRKLLEGEESRINLPIQTF", "down_seq": "ALNFRETSPEQRGSEVHTKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "site_lbl": "Ser423" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48675-1.45.45", "start_pos": 45, "end_pos": 45, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLGSPLSSPVFPRAGFGTKG", "down_seq": "SSSVTSRVYQVSRTSGGAGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "site_lbl": "Ser45" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P48675-1.25.25", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "P48675-1.28.28", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P48675-1.31.31", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P48675-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P48675-1.60.60", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48675-1.60.60", "start_pos": 60, "end_pos": 60, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FGTKGSSSSVTSRVYQVSRT", "down_seq": "GGAGGLGSLRASRLGTTRAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AURKB", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "site_lbl": "Ser60" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P48675-1.45.45", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P48675-1.68.68", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P48675-1.76.76", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P48675-1.77.77", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48675-1.68.68", "start_pos": 68, "end_pos": 68, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SVTSRVYQVSRTSGGAGGLG", "down_seq": "LRASRLGTTRAPSYGAGELL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "site_lbl": "Ser68" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P48675-1.60.60", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P48675-1.76.76", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P48675-1.77.77", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P48675-1.81.81", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P48675-1.76.76", "start_pos": 76, "end_pos": 76, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VSRTSGGAGGLGSLRASRLG", "down_seq": "TRAPSYGAGELLDFSLADAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by ROCK1", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "site_lbl": "Thr76" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P48675-1.60.60", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P48675-1.68.68", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P48675-1.77.77", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P48675-1.81.81", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48675-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SRTSGGAGGLGSLRASRLGT", "down_seq": "RAPSYGAGELLDFSLADAVN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by ROCK1", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "site_lbl": "Thr77" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P48675-1.60.60", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P48675-1.68.68", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P48675-1.76.76", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P48675-1.81.81", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48675-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSQAYS", "down_seq": "SQRVSSYRRTFGGAPGFSLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CDK1", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "site_lbl": "Ser7" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P48675-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P48675-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P48675-1.17.17", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P48675-1.25.25", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P48675-1.81.81", "start_pos": 81, "end_pos": 81, "uniprot_canonical_ac": "P48675-1", "length": 469, "uniprot_id": "DESM_RAT", "protein_name": "Desmin", "refseq_ac": "NP_071976", "refseq_name": "desmin", "gene_name": "Des", "gene_names_uniprotkb": "Des", "gene_names_refseq": "Des", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGAGGLGSLRASRLGTTRAP", "down_seq": "YGAGELLDFSLADAVNQEFL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P48675", "url": "https://www.uniprot.org/uniprotkb/P48675" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P48675", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P48675" } ], "site_lbl": "Ser81" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "17", "end_pos": "17" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "357", "end_pos": "357" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "60", "end_pos": "60" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "76", "end_pos": "76" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "81", "end_pos": "81" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P48675-1.68.68", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P48675-1.76.76", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P48675-1.77.77", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P52481-1.311.311", "start_pos": 311, "end_pos": 311, "uniprot_canonical_ac": "P52481-1", "length": 477, "uniprot_id": "CAP2_RAT", "protein_name": "Adenylyl cyclase-associated protein 2", "refseq_ac": "NP_446326", "refseq_name": "adenylyl cyclase-associated protein 2", "gene_name": "Cap2", "gene_names_uniprotkb": "Cap2", "gene_names_refseq": "Cap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P52481", "url": "https://www.uniprot.org/uniprotkb/P52481" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PSLRAQGQIRSPTKTRTPSP", "down_seq": "SSKSNSPQKHAPVLELEGKK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr311", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "311", "end_pos": "311" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "309", "end_pos": "309" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P52481-1.301.301", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P52481-1.309.309", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P52481-1.301.301", "start_pos": 301, "end_pos": 301, "uniprot_canonical_ac": "P52481-1", "length": 477, "uniprot_id": "CAP2_RAT", "protein_name": "Adenylyl cyclase-associated protein 2", "refseq_ac": "NP_446326", "refseq_name": "adenylyl cyclase-associated protein 2", "gene_name": "Cap2", "gene_names_uniprotkb": "Cap2", "gene_names_refseq": "Cap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P52481", "url": "https://www.uniprot.org/uniprotkb/P52481" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P52481", "url": "https://www.uniprot.org/uniprotkb/P52481" }, { "database": "iPTMnet", "id": "P52481", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52481" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P52481", "url": "https://www.uniprot.org/uniprotkb/P52481", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P52481", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52481", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTDDKKIYKNPSLRAQGQIR", "down_seq": "PTKTRTPSPTSSKSNSPQKH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P52481", "url": "https://www.uniprot.org/uniprotkb/P52481" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P52481", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P52481" } ], "site_lbl": "Ser301" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "311", "end_pos": "311" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "309", "end_pos": "309" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "P52481-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P52481-1.311.311", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P52481-1.309.309", "start_pos": 309, "end_pos": 309, "uniprot_canonical_ac": "P52481-1", "length": 477, "uniprot_id": "CAP2_RAT", "protein_name": "Adenylyl cyclase-associated protein 2", "refseq_ac": "NP_446326", "refseq_name": "adenylyl cyclase-associated protein 2", "gene_name": "Cap2", "gene_names_uniprotkb": "Cap2", "gene_names_refseq": "Cap2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P52481", "url": "https://www.uniprot.org/uniprotkb/P52481" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P52481", "url": "https://www.uniprot.org/uniprotkb/P52481", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KNPSLRAQGQIRSPTKTRTP", "down_seq": "PTSSKSNSPQKHAPVLELEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P52481", "url": "https://www.uniprot.org/uniprotkb/P52481" } ], "site_lbl": "Ser309" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "311", "end_pos": "311" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "309", "end_pos": "309" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P52481-1.301.301", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P52481-1.311.311", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70486-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" }, { "database": "iPTMnet", "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGKKSTDLKEEKVKREREYE", "down_seq": "SSDGTEKLPEGEEIGLFSKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486" } ], "site_lbl": "Ser112" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P70486-1.113.113", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P70486-1.114.114", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P70486-1.113.113", "start_pos": 113, "end_pos": 113, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" }, { "database": "iPTMnet", "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GKKSTDLKEEKVKREREYES", "down_seq": "SDGTEKLPEGEEIGLFSKGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486" } ], "site_lbl": "Ser113" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P70486-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P70486-1.114.114", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P70486-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" }, { "database": "iPTMnet", "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKSTDLKEEKVKREREYESS", "down_seq": "DGTEKLPEGEEIGLFSKGVK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486" } ], "site_lbl": "Ser114" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P70486-1.112.112", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P70486-1.113.113", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P70486-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" }, { "database": "iPTMnet", "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DEAKKGKKWKDKSCEKKEEL", "down_seq": "DSVDRLPVKGESCDSSEDKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486" } ], "site_lbl": "Ser162" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P70486-1.345.345", "start_pos": 345, "end_pos": 345, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" }, { "database": "iPTMnet", "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QKIKPVTENLVLPSHTGFCQ", "down_seq": "SGDEAFSKSVPATVDDDDDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486" } ], "site_lbl": "Ser345" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P70486-1.346.346", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P70486-1.354.354", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P70486-1.346.346", "start_pos": 346, "end_pos": 346, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" }, { "database": "iPTMnet", "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KIKPVTENLVLPSHTGFCQS", "down_seq": "GDEAFSKSVPATVDDDDDDN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P70486", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P70486" } ], "site_lbl": "Ser346" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P70486-1.345.345", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P70486-1.354.354", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P70486-1.354.354", "start_pos": 354, "end_pos": 354, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVLPSHTGFCQSSGDEAFSK", "down_seq": "VPATVDDDDDDNDPENRIAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "site_lbl": "Ser354" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P70486-1.345.345", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P70486-1.346.346", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70486-1.423.423", "start_pos": 423, "end_pos": 423, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRIGKQSEETPGDDGSNQVN", "down_seq": "ESDSDSEESKKPRYRHRLLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "site_lbl": "Ser423" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P70486-1.425.425", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P70486-1.427.427", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70486-1.425.425", "start_pos": 425, "end_pos": 425, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IGKQSEETPGDDGSNQVNSE", "down_seq": "DSDSEESKKPRYRHRLLRHK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "site_lbl": "Ser425" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P70486-1.423.423", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P70486-1.427.427", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70486-1.427.427", "start_pos": 427, "end_pos": 427, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KQSEETPGDDGSNQVNSESD", "down_seq": "DSEESKKPRYRHRLLRHKLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "site_lbl": "Ser427" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P70486-1.423.423", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P70486-1.425.425", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70486-1.449.449", "start_pos": 449, "end_pos": 449, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEESKKPRYRHRLLRHKLSL", "down_seq": "DGESGGEKKTKPKEHKETKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "site_lbl": "Ser449" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P70486-1.453.453", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70486-1.453.453", "start_pos": 453, "end_pos": 453, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKPRYRHRLLRHKLSLSDGE", "down_seq": "GGEKKTKPKEHKETKGRNRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "site_lbl": "Ser453" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P70486-1.449.449", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70486-1.62.62", "start_pos": 62, "end_pos": 62, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VTKSKEKSKHLRTRTGRKVK", "down_seq": "DVTDRFRKKEQSSESSEGEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "site_lbl": "Ser62" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "P70486-1.74.74", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P70486-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "P70486-1", "length": 527, "uniprot_id": "ATRX_RAT", "protein_name": "Chromatin remodeler ATRX", "refseq_ac": "", "refseq_name": "", "gene_name": "Atrx", "gene_names_uniprotkb": "Atrx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRTGRKVKSDVTDRFRKKEQ", "down_seq": "SESSEGEKKQGRQRTGTRGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P70486", "url": "https://www.uniprot.org/uniprotkb/P70486" } ], "site_lbl": "Ser74" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "162", "end_pos": "162" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "423", "end_pos": "423" }, { "start_pos": "425", "end_pos": "425" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "453", "end_pos": "453" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "74", "end_pos": "74" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "P70486-1.62.62", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.1079.1079", "start_pos": 1079, "end_pos": 1079, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RLPDYPRPGRPVPGYRGPVY", "down_seq": "VTGEEVSFSFSTSSAPAVLL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1079", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.1148.1148", "start_pos": 1148, "end_pos": 1148, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" }, { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SPYVYQLTTRPVTDGQPHSV", "down_seq": "ITRVYRNLFIQVDYFPLTEQ", "glycosylation": [ { "glytoucan_ac": "G80920RR", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1148", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1148", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97846-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YMLLYGDRVDSWTPFYQQGH", "down_seq": "ATFFGNVNDSAVVRHDLHYH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn121", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "P97846-1.129.129", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.129.129", "start_pos": 129, "end_pos": 129, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VDSWTPFYQQGHNATFFGNV", "down_seq": "DSAVVRHDLHYHFTARYIRI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn129", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P97846-1.121.121", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.1347.1347", "start_pos": 1347, "end_pos": 1347, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SHPGGKAPLPPSGPAQAPAP", "down_seq": "PAPTQVPTPAPAPASGPGPR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1347", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.277.277", "start_pos": 277, "end_pos": 277, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" }, { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals.", "journal": "Molecular omics", "date": "2021", "authors": "Matthies I, Abrahams JL, Jensen P, Oliveira T, Kolarich D, Larsen MR", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals", "journal": "Molecular Omics", "date": "2021", "authors": "Matthies I., Abrahams J.L., Jensen P., Oliveira T., Kolarich D., Larsen M.R.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "DOI", "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099", "database": "PubMed", "categories": [ "Other" ] }, { "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B", "database": "DOI", "categories": [ "Other" ] }, { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GVLNDLSWHYVRVDRYGREA", "down_seq": "LTLDGYVHRFVLNGDFERLN", "glycosylation": [ { "glytoucan_ac": "G80920RR", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn277", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn277", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97846-1.421.421", "start_pos": 421, "end_pos": 421, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FSRLGDGLGHVELMLSEGQV", "down_seq": "VSIAQTGRKKLQFAAGYRLN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn421", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.500.500", "start_pos": 500, "end_pos": 500, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" }, { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GTSYFFGGCPKPASRWGCHS", "down_seq": "QTAFHGCMELLKVDGQLVNL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn500", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "P97846-1.519.519", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97846-1.519.519", "start_pos": 519, "end_pos": 519, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SNQTAFHGCMELLKVDGQLV", "down_seq": "LTLVEFRKLGYFAEVLFDTC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn519", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P97846-1.500.500", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.598.598", "start_pos": 598, "end_pos": 598, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" }, { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HEPLYKESCEAYRLSGKYSG", "down_seq": "YTIDPDGSGPLKPFVVYCDI", "glycosylation": [ { "glytoucan_ac": "G02815KT", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn598", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn598", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97846-1.654.654", "start_pos": 654, "end_pos": 654, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TTRVTGSSMDRPFLGAIQYW", "down_seq": "ASWEEVSALANASQHCEQWI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn654", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "P97846-1.665.665", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.665.665", "start_pos": 665, "end_pos": 665, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PFLGAIQYWNASWEEVSALA", "down_seq": "ASQHCEQWIEFSCYNSRLLN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn665", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P97846-1.654.654", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.764.764", "start_pos": 764, "end_pos": 764, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KGLLTFVDHLPVTQVVIGDT", "down_seq": "RSSSEAQFFLRPLRCYGDRN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn764", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.805.805", "start_pos": 805, "end_pos": 805, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SWNTISFRTGAALRFPPIRA", "down_seq": "HSLDVSFYFRTSAPSGVFLE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn805", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.844.844", "start_pos": 844, "end_pos": 844, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" }, { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LENMGGPFCQWRRPYVRVEL", "down_seq": "TSRDVVFAFDIGNGDENLTV", "glycosylation": [ { "glytoucan_ac": "G60230HH", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-844 ; ASN-844", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn844", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G80920RR", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn844", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn844", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "P97846-1.861.861", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 2 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 2 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97846-1.861.861", "start_pos": 861, "end_pos": 861, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VELNTSRDVVFAFDIGNGDE", "down_seq": "LTVHSDDFEFNDDEWHLVRA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn861", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P97846-1.844.844", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.949.949", "start_pos": 949, "end_pos": 949, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VGCLRAMRLNGVTLNLEGRA", "down_seq": "ASEGTFPNCTGHCTHPRFPC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn949", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "P97846-1.957.957", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.957.957", "start_pos": 957, "end_pos": 957, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LNGVTLNLEGRANASEGTFP", "down_seq": "CTGHCTHPRFPCFHGGRCVE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn957", "evidence": [ { "id": "P97846", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97846#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P97846-1.949.949", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97846-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P97846", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P97846" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97846", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P97846", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P97846", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P97846" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97846-1.1380.1380", "start_pos": 1380, "end_pos": 1380, "uniprot_canonical_ac": "P97846-1", "length": 1381, "uniprot_id": "CNTP1_RAT", "protein_name": "Contactin-associated protein 1", "refseq_ac": "NP_114450", "refseq_name": "contactin-associated protein 1 precursor", "gene_name": "Cntnap1", "gene_names_uniprotkb": "Cntnap1; Caspr; Nrxn4", "gene_names_refseq": "Caspr; Cntnap1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PASGPGPRDQNLPQILEESR", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97846", "url": "https://www.uniprot.org/uniprotkb/P97846" } ], "site_lbl": "Ser1380" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1079", "end_pos": "1079" }, { "start_pos": "1148", "end_pos": "1148" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "1347", "end_pos": "1347" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "598", "end_pos": "598" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "665", "end_pos": "665" }, { "start_pos": "764", "end_pos": "764" }, { "start_pos": "805", "end_pos": "805" }, { "start_pos": "844", "end_pos": "844" }, { "start_pos": "861", "end_pos": "861" }, { "start_pos": "949", "end_pos": "949" }, { "start_pos": "957", "end_pos": "957" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1380", "end_pos": "1380" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q01134-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "Q01134-1", "length": 453, "uniprot_id": "CHKA_RAT", "protein_name": "Choline kinase alpha", "refseq_ac": "NP_058823", "refseq_name": "choline kinase alpha isoform 2", "gene_name": "Chka", "gene_names_uniprotkb": "Chka; Chk; Ckr", "gene_names_refseq": "CK-R; Chka; Chk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q01134", "url": "https://www.uniprot.org/uniprotkb/Q01134" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GEAEPSPLGLLLSCGGSAAP", "down_seq": "PGVGQQRDAAGELESKQLGG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr29", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "29", "end_pos": "29" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "275", "end_pos": "275" }, { "start_pos": "71", "end_pos": "71" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q01134-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "Q01134-1", "length": 453, "uniprot_id": "CHKA_RAT", "protein_name": "Choline kinase alpha", "refseq_ac": "NP_058823", "refseq_name": "choline kinase alpha isoform 2", "gene_name": "Chka", "gene_names_uniprotkb": "Chka; Chk; Ckr", "gene_names_refseq": "CK-R; Chka; Chk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q01134", "url": "https://www.uniprot.org/uniprotkb/Q01134" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q01134", "url": "https://www.uniprot.org/uniprotkb/Q01134", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QVLRLKFSREARVQQLHKFL", "down_seq": "YNLPLELENLRSLLQYTRSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q01134", "url": "https://www.uniprot.org/uniprotkb/Q01134" } ], "site_lbl": "Ser275" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "29", "end_pos": "29" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "275", "end_pos": "275" }, { "start_pos": "71", "end_pos": "71" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q01134-1.71.71", "start_pos": 71, "end_pos": 71, "uniprot_canonical_ac": "Q01134-1", "length": 453, "uniprot_id": "CHKA_RAT", "protein_name": "Choline kinase alpha", "refseq_ac": "NP_058823", "refseq_name": "choline kinase alpha isoform 2", "gene_name": "Chka", "gene_names_uniprotkb": "Chka; Chk; Ckr", "gene_names_refseq": "CK-R; Chka; Chk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q01134", "url": "https://www.uniprot.org/uniprotkb/Q01134" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q01134", "url": "https://www.uniprot.org/uniprotkb/Q01134" }, { "database": "iPTMnet", "id": "Q01134", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01134" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q01134", "url": "https://www.uniprot.org/uniprotkb/Q01134", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q01134", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01134", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SQPLALPPPPPPPLPLPPPP", "down_seq": "PPLADEQPEPRTRRRAYLWC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q01134", "url": "https://www.uniprot.org/uniprotkb/Q01134" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q01134", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q01134" } ], "site_lbl": "Ser71" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "29", "end_pos": "29" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "275", "end_pos": "275" }, { "start_pos": "71", "end_pos": "71" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1WIM2-1.211.211", "start_pos": 211, "end_pos": 211, "uniprot_canonical_ac": "Q1WIM2-1", "length": 435, "uniprot_id": "CADM2_RAT", "protein_name": "Cell adhesion molecule 2", "refseq_ac": "NP_001040567", "refseq_name": "cell adhesion molecule 2 precursor", "gene_name": "Cadm2", "gene_names_uniprotkb": "Cadm2; Igsf4d; Necl3", "gene_names_refseq": "Cadm2; Igsf4d; Necl-3; SynCAM 2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2#ptm_processing" }, { "database": "UniProtKB", "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RVDRSDDGVAVICRVDHESL", "down_seq": "ATPQVAMQVLEIHYTPSVKI", "glycosylation": [ { "glytoucan_ac": "G07799LX", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G19379ID", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G25987BV", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G29651HS", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G47737VJ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G50073PQ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G68318VE", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G69107AL", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G84291SQ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G87051GH", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G88725PI", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "423", "end_pos": "423" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 11 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 11 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 11 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 11 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 11 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 11 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1WIM2-1.291.291", "start_pos": 291, "end_pos": 291, "uniprot_canonical_ac": "Q1WIM2-1", "length": 435, "uniprot_id": "CADM2_RAT", "protein_name": "Cell adhesion molecule 2", "refseq_ac": "NP_001040567", "refseq_name": "cell adhesion molecule 2 precursor", "gene_name": "Cadm2", "gene_names_uniprotkb": "Cadm2; Igsf4d; Necl3", "gene_names_refseq": "Cadm2; Igsf4d; Necl-3; SynCAM 2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PDRMVVSGRELNILFLNKTD", "down_seq": "GTYRCEATNTIGQSSAEYVL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn291", "evidence": [ { "id": "Q1WIM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "423", "end_pos": "423" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1WIM2-1.31.31", "start_pos": 31, "end_pos": 31, "uniprot_canonical_ac": "Q1WIM2-1", "length": 435, "uniprot_id": "CADM2_RAT", "protein_name": "Cell adhesion molecule 2", "refseq_ac": "NP_001040567", "refseq_name": "cell adhesion molecule 2 precursor", "gene_name": "Cadm2", "gene_names_uniprotkb": "Cadm2; Igsf4d; Necl3", "gene_names_refseq": "Cadm2; Igsf4d; Necl-3; SynCAM 2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FYSVCGLLLLGSQGQFPLTQ", "down_seq": "VTVVEGGTAILTCRVDQNDN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn31", "evidence": [ { "id": "Q1WIM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "423", "end_pos": "423" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q1WIM2-1.51.51", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q1WIM2-1.51.51", "start_pos": 51, "end_pos": 51, "uniprot_canonical_ac": "Q1WIM2-1", "length": 435, "uniprot_id": "CADM2_RAT", "protein_name": "Cell adhesion molecule 2", "refseq_ac": "NP_001040567", "refseq_name": "cell adhesion molecule 2 precursor", "gene_name": "Cadm2", "gene_names_uniprotkb": "Cadm2; Igsf4d; Necl3", "gene_names_refseq": "Cadm2; Igsf4d; Necl-3; SynCAM 2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2#ptm_processing" }, { "database": "UniProtKB", "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2" }, { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NVTVVEGGTAILTCRVDQND", "down_seq": "TSLQWSNPAQQTLYFDDKKA", "glycosylation": [ { "glytoucan_ac": "G25987BV", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn51", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G30159WR", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "ASN-51 ; ASN-51", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn51", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G48975GN", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-51", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn51", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G50073PQ", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn51", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G82680EC", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "ASN-51 ; ASN-51", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn51", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G88725PI", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn51", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "G97459BD", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-51", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn51", "evidence": [ { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn51", "evidence": [ { "id": "Q1WIM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "423", "end_pos": "423" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q1WIM2-1.31.31", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 8 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 7 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 7 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 7 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 7 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 7 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q1WIM2-1.423.423", "start_pos": 423, "end_pos": 423, "uniprot_canonical_ac": "Q1WIM2-1", "length": 435, "uniprot_id": "CADM2_RAT", "protein_name": "Cell adhesion molecule 2", "refseq_ac": "NP_001040567", "refseq_name": "cell adhesion molecule 2 precursor", "gene_name": "Cadm2", "gene_names_uniprotkb": "Cadm2; Igsf4d; Necl3", "gene_names_refseq": "Cadm2; Igsf4d; Necl-3; SynCAM 2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2" }, { "database": "iPTMnet", "id": "Q1WIM2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1WIM2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q1WIM2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1WIM2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAKGAEDAPDADTAIINAEG", "down_seq": "QVNAEEKKEYFI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q1WIM2", "url": "https://www.uniprot.org/uniprotkb/Q1WIM2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q1WIM2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q1WIM2" } ], "site_lbl": "Ser423" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "51", "end_pos": "51" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "423", "end_pos": "423" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q5M876-1.83.83", "start_pos": 83, "end_pos": 83, "uniprot_canonical_ac": "Q5M876-1", "length": 319, "uniprot_id": "ACY3_RAT", "protein_name": "N-acyl-aromatic-L-amino acid amidohydrolase (carboxylate-forming)", "refseq_ac": "NP_001009603", "refseq_name": "N-acyl-aromatic-L-amino acid amidohydrolase (carboxylate-forming)", "gene_name": "Acy3", "gene_names_uniprotkb": "Acy3", "gene_names_refseq": "Acy3; RGD1305394", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M876", "url": "https://www.uniprot.org/uniprotkb/Q5M876" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RYIDRDLNRTFTLTFLGSTA", "down_seq": "PDDPYEVKRAQELNQLLGPK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr83", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "83", "end_pos": "83" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "318", "end_pos": "318" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5M876-1.318.318", "start_pos": 318, "end_pos": 318, "uniprot_canonical_ac": "Q5M876-1", "length": 319, "uniprot_id": "ACY3_RAT", "protein_name": "N-acyl-aromatic-L-amino acid amidohydrolase (carboxylate-forming)", "refseq_ac": "NP_001009603", "refseq_name": "N-acyl-aromatic-L-amino acid amidohydrolase (carboxylate-forming)", "gene_name": "Acy3", "gene_names_uniprotkb": "Acy3", "gene_names_refseq": "Acy3; RGD1305394", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5M876", "url": "https://www.uniprot.org/uniprotkb/Q5M876" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q5M876", "url": "https://www.uniprot.org/uniprotkb/Q5M876" }, { "database": "iPTMnet", "id": "Q5M876", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M876" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q5M876", "url": "https://www.uniprot.org/uniprotkb/Q5M876", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q5M876", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M876", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SEKIRISVPALPGLTPSSTQ", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q5M876", "url": "https://www.uniprot.org/uniprotkb/Q5M876" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q5M876", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q5M876" } ], "site_lbl": "Thr318" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "83", "end_pos": "83" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "318", "end_pos": "318" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62717-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q62717", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q62717" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] } ], "crossref": [ { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62717", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q62717", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "Q62717", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q62717" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q62717-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q62717-1.6.6", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q62717-1.7.7", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62717-1.476.476", "start_pos": 476, "end_pos": 476, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "CAPS acts at a prefusion step in dense-core vesicle exocytosis as a PIP2 binding protein.", "journal": "Neuron", "date": "2004", "authors": "Grishanin RN, Kowalchyk JA, Klenchin VA, Ann K, Earles CA, Chapman ER, Gerona RR, Martin TF", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "reference": [ { "type": "PubMed", "id": "15312653", "url": "https://glygen.org/publication/PubMed/15312653" } ] } ], "crossref": [ { "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15312653", "url": "https://glygen.org/publication/PubMed/15312653", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "VKVKLFTESTGVLALEDKEL", "down_seq": "RVILHPTPNSPKQSEWHKMT", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "Loss of function.", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" }, { "database": "PubMed", "id": "15312653", "url": "https://glygen.org/publication/PubMed/15312653" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62717-1.531.531", "start_pos": 531, "end_pos": 531, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Membrane association domains in Ca2+-dependent activator protein for secretion mediate plasma membrane and dense-core vesicle binding required for Ca2+-dependent exocytosis.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Grishanin RN, Klenchin VA, Loyet KM, Kowalchyk JA, Ann K, Martin TF", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "reference": [ { "type": "PubMed", "id": "11927595", "url": "https://glygen.org/publication/PubMed/11927595" } ] } ], "crossref": [ { "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11927595", "url": "https://glygen.org/publication/PubMed/11927595", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "AVRMDKPQNMKHSGYLWTIG", "down_seq": "NVWKRWKKRFFVLVQVSQYT", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "E", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" }, { "database": "PubMed", "id": "11927595", "url": "https://glygen.org/publication/PubMed/11927595" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q62717-1.537.540", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62717-1.537.540", "start_pos": 537, "end_pos": 540, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Membrane association domains in Ca2+-dependent activator protein for secretion mediate plasma membrane and dense-core vesicle binding required for Ca2+-dependent exocytosis.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Grishanin RN, Klenchin VA, Loyet KM, Kowalchyk JA, Ann K, Martin TF", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "reference": [ { "type": "PubMed", "id": "11927595", "url": "https://glygen.org/publication/PubMed/11927595" } ] } ], "crossref": [ { "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11927595", "url": "https://glygen.org/publication/PubMed/11927595", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "WKKR", "start_aa": "W", "up_seq": "PQNMKHSGYLWTIGKNVWKR", "down_seq": "FFVLVQVSQYTFAMCSYREK", "mutagenesis": [ { "sequence_org": "WKKR", "sequence_mut": "SQKE", "comment": "Affects PtdIns(4,5)P2-binding, plasma membrane-association but not binding to DCVs.", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" }, { "database": "PubMed", "id": "11927595", "url": "https://glygen.org/publication/PubMed/11927595" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q62717-1.531.531", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q62717-1.558.561", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62717-1.558.561", "start_pos": 558, "end_pos": 561, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Membrane association domains in Ca2+-dependent activator protein for secretion mediate plasma membrane and dense-core vesicle binding required for Ca2+-dependent exocytosis.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Grishanin RN, Klenchin VA, Loyet KM, Kowalchyk JA, Ann K, Martin TF", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "reference": [ { "type": "PubMed", "id": "11927595", "url": "https://glygen.org/publication/PubMed/11927595" } ] } ], "crossref": [ { "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11927595", "url": "https://glygen.org/publication/PubMed/11927595", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "REKK", "start_aa": "R", "up_seq": "KKRFFVLVQVSQYTFAMCSY", "down_seq": "AEPQELLQLDGYTVDYTDPQ", "mutagenesis": [ { "sequence_org": "REKK", "sequence_mut": "DEEE", "comment": "Affects PtdIns(4,5)P2-binding, plasma membrane-association but not binding to DCVs.", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" }, { "database": "PubMed", "id": "11927595", "url": "https://glygen.org/publication/PubMed/11927595" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q62717-1.537.540", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "upstream", "id": "Q62717-1.561.561", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62717-1.561.561", "start_pos": 561, "end_pos": 561, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Membrane association domains in Ca2+-dependent activator protein for secretion mediate plasma membrane and dense-core vesicle binding required for Ca2+-dependent exocytosis.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Grishanin RN, Klenchin VA, Loyet KM, Kowalchyk JA, Ann K, Martin TF", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "reference": [ { "type": "PubMed", "id": "11927595", "url": "https://glygen.org/publication/PubMed/11927595" } ] } ], "crossref": [ { "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11927595", "url": "https://glygen.org/publication/PubMed/11927595", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "FFVLVQVSQYTFAMCSYREK", "down_seq": "AEPQELLQLDGYTVDYTDPQ", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "E", "comment": "Affects PtdIns(4,5)P2-binding, plasma membrane-association but not binding to DCVs.", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" }, { "database": "PubMed", "id": "11927595", "url": "https://glygen.org/publication/PubMed/11927595" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "downstream", "id": "Q62717-1.558.561", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62717-1.259.259", "start_pos": 259, "end_pos": 259, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" }, { "database": "iPTMnet", "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FDAIYRGEEDPRKQQARMTA", "down_seq": "AASELILSKEQLYEMFQNIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717" } ], "site_lbl": "Ser259" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62717-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ILEEESGKEVLGSAASGARL", "down_seq": "PSRTNEGSAGSAGMGGSGAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "site_lbl": "Ser34" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62717-1.5.5", "start_pos": 5, "end_pos": 5, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "CAPS activity in priming vesicle exocytosis requires CK2 phosphorylation.", "journal": "The Journal of biological chemistry", "date": "2009", "authors": "Nojiri M, Loyet KM, Klenchin VA, Kabachinski G, Martin TF", "evidence": [ { "database": "iPTMnet", "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717" } ], "reference": [ { "type": "PubMed", "id": "19460754", "url": "https://glygen.org/publication/PubMed/19460754" } ] } ], "crossref": [ { "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19460754", "url": "https://glygen.org/publication/PubMed/19460754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MLDP", "down_seq": "SSEEESDEILEEESGKEVLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717" }, { "database": "PubMed", "id": "19460754", "url": "https://glygen.org/publication/PubMed/19460754" } ], "site_lbl": "Ser5" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q62717-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q62717-1.6.6", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q62717-1.7.7", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62717-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "CAPS activity in priming vesicle exocytosis requires CK2 phosphorylation.", "journal": "The Journal of biological chemistry", "date": "2009", "authors": "Nojiri M, Loyet KM, Klenchin VA, Kabachinski G, Martin TF", "evidence": [ { "database": "iPTMnet", "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717" } ], "reference": [ { "type": "PubMed", "id": "19460754", "url": "https://glygen.org/publication/PubMed/19460754" } ] } ], "crossref": [ { "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19460754", "url": "https://glygen.org/publication/PubMed/19460754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MLDPS", "down_seq": "SEEESDEILEEESGKEVLGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717" }, { "database": "PubMed", "id": "19460754", "url": "https://glygen.org/publication/PubMed/19460754" } ], "site_lbl": "Ser6" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q62717-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q62717-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q62717-1.7.7", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62717-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "CAPS activity in priming vesicle exocytosis requires CK2 phosphorylation.", "journal": "The Journal of biological chemistry", "date": "2009", "authors": "Nojiri M, Loyet KM, Klenchin VA, Kabachinski G, Martin TF", "evidence": [ { "database": "iPTMnet", "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717" } ], "reference": [ { "type": "PubMed", "id": "19460754", "url": "https://glygen.org/publication/PubMed/19460754" } ] } ], "crossref": [ { "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19460754", "url": "https://glygen.org/publication/PubMed/19460754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MLDPSS", "down_seq": "EEESDEILEEESGKEVLGSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717" }, { "database": "PubMed", "id": "19460754", "url": "https://glygen.org/publication/PubMed/19460754" } ], "site_lbl": "Ser7" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q62717-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q62717-1.5.5", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q62717-1.6.6", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62717-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" }, { "database": "iPTMnet", "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGGGAGGLQPSSRAGGGRPS", "down_seq": "PSPSVVSEKEKEELERLQKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717" } ], "site_lbl": "Ser89" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q62717-1.96.96", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62717-1.96.96", "start_pos": 96, "end_pos": 96, "uniprot_canonical_ac": "Q62717-1", "length": 1289, "uniprot_id": "CAPS1_RAT", "protein_name": "Calcium-dependent secretion activator 1", "refseq_ac": "NP_037351", "refseq_name": "calcium-dependent secretion activator 1", "gene_name": "Cadps", "gene_names_uniprotkb": "Cadps; Caps1; Caps", "gene_names_refseq": "Cadps; Caps1; Caps2; Caps", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" }, { "database": "iPTMnet", "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LQPSSRAGGGRPSSPSPSVV", "down_seq": "EKEKEELERLQKEEEERKKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62717", "url": "https://www.uniprot.org/uniprotkb/Q62717" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62717", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62717" } ], "site_lbl": "Ser96" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "476", "end_pos": "476" }, { "start_pos": "531", "end_pos": "531" }, { "start_pos": "537", "end_pos": "540" }, { "start_pos": "558", "end_pos": "561" }, { "start_pos": "561", "end_pos": "561" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "5", "end_pos": "5" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "7", "end_pos": "7" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "96", "end_pos": "96" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q62717-1.89.89", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63369-1.336.336", "start_pos": 336, "end_pos": 336, "uniprot_canonical_ac": "Q63369-1", "length": 973, "uniprot_id": "NFKB1_RAT", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "refseq_ac": "NP_001401941", "refseq_name": "nuclear factor NF-kappa-B p105 subunit isoform 1", "gene_name": "Nfkb1", "gene_names_uniprotkb": "Nfkb1", "gene_names_refseq": "EBP-1; NF-kB; NFKB-p50; Nfkb1; p50", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KYKDVNITKPASVFVQLRRK", "down_seq": "DLETSEPKPFLYYPEIKDKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "site_lbl": "Ser336" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "757", "end_pos": "757" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "942", "end_pos": "942" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63369-1.449.449", "start_pos": 449, "end_pos": 449, "uniprot_canonical_ac": "Q63369-1", "length": 973, "uniprot_id": "NFKB1_RAT", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "refseq_ac": "NP_001401941", "refseq_name": "nuclear factor NF-kappa-B p105 subunit isoform 1", "gene_name": "Nfkb1", "gene_names_uniprotkb": "Nfkb1", "gene_names_refseq": "EBP-1; NF-kB; NFKB-p50; Nfkb1; p50", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GITHGTINTKFKNEPRDCAK", "down_seq": "DDREILNPPEKETQGEGPSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "site_lbl": "Ser449" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "757", "end_pos": "757" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "942", "end_pos": "942" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63369-1.757.757", "start_pos": 757, "end_pos": 757, "uniprot_canonical_ac": "Q63369-1", "length": 973, "uniprot_id": "NFKB1_RAT", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "refseq_ac": "NP_001401941", "refseq_name": "nuclear factor NF-kappa-B p105 subunit isoform 1", "gene_name": "Nfkb1", "gene_names_uniprotkb": "Nfkb1", "gene_names_refseq": "EBP-1; NF-kB; NFKB-p50; Nfkb1; p50", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" }, { "database": "iPTMnet", "id": "Q63369", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63369" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63369", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63369", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KAAGADPLVENFEPLYDLDD", "down_seq": "WEKAGEDEGVVPGTTPLDMA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63369", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63369" } ], "site_lbl": "Ser757" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "757", "end_pos": "757" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "942", "end_pos": "942" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63369-1.898.898", "start_pos": 898, "end_pos": 898, "uniprot_canonical_ac": "Q63369-1", "length": 973, "uniprot_id": "NFKB1_RAT", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "refseq_ac": "NP_001401941", "refseq_name": "nuclear factor NF-kappa-B p105 subunit isoform 1", "gene_name": "Nfkb1", "gene_names_uniprotkb": "Nfkb1", "gene_names_refseq": "EBP-1; NF-kB; NFKB-p50; Nfkb1; p50", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GYTEAIEVIQAAFRTPETTA", "down_seq": "SPVTTAQAHLLPLSSSSTRQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "site_lbl": "Ser898" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "757", "end_pos": "757" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "942", "end_pos": "942" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q63369-1.912.912", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63369-1.912.912", "start_pos": 912, "end_pos": 912, "uniprot_canonical_ac": "Q63369-1", "length": 973, "uniprot_id": "NFKB1_RAT", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "refseq_ac": "NP_001401941", "refseq_name": "nuclear factor NF-kappa-B p105 subunit isoform 1", "gene_name": "Nfkb1", "gene_names_uniprotkb": "Nfkb1", "gene_names_refseq": "EBP-1; NF-kB; NFKB-p50; Nfkb1; p50", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPETTASSPVTTAQAHLLPL", "down_seq": "SSSTRQHIDELRDNDSVCDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GSK3-beta; in vitro", "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "site_lbl": "Ser912" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "757", "end_pos": "757" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "942", "end_pos": "942" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q63369-1.898.898", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q63369-1.928.928", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q63369-1.932.932", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63369-1.928.928", "start_pos": 928, "end_pos": 928, "uniprot_canonical_ac": "Q63369-1", "length": 973, "uniprot_id": "NFKB1_RAT", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "refseq_ac": "NP_001401941", "refseq_name": "nuclear factor NF-kappa-B p105 subunit isoform 1", "gene_name": "Nfkb1", "gene_names_uniprotkb": "Nfkb1", "gene_names_refseq": "EBP-1; NF-kB; NFKB-p50; Nfkb1; p50", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLPLSSSSTRQHIDELRDND", "down_seq": "VCDSGVETSFRKLSFSESLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "site_lbl": "Ser928" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "757", "end_pos": "757" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "942", "end_pos": "942" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q63369-1.912.912", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q63369-1.932.932", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q63369-1.937.937", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q63369-1.942.942", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q63369-1.948.948", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63369-1.932.932", "start_pos": 932, "end_pos": 932, "uniprot_canonical_ac": "Q63369-1", "length": 973, "uniprot_id": "NFKB1_RAT", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "refseq_ac": "NP_001401941", "refseq_name": "nuclear factor NF-kappa-B p105 subunit isoform 1", "gene_name": "Nfkb1", "gene_names_uniprotkb": "Nfkb1", "gene_names_refseq": "EBP-1; NF-kB; NFKB-p50; Nfkb1; p50", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSSTRQHIDELRDNDSVCD", "down_seq": "GVETSFRKLSFSESLTGDGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by IKKB", "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "site_lbl": "Ser932" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "757", "end_pos": "757" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "942", "end_pos": "942" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q63369-1.912.912", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q63369-1.928.928", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q63369-1.937.937", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q63369-1.942.942", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q63369-1.948.948", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63369-1.937.937", "start_pos": 937, "end_pos": 937, "uniprot_canonical_ac": "Q63369-1", "length": 973, "uniprot_id": "NFKB1_RAT", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "refseq_ac": "NP_001401941", "refseq_name": "nuclear factor NF-kappa-B p105 subunit isoform 1", "gene_name": "Nfkb1", "gene_names_uniprotkb": "Nfkb1", "gene_names_refseq": "EBP-1; NF-kB; NFKB-p50; Nfkb1; p50", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RQHIDELRDNDSVCDSGVET", "down_seq": "FRKLSFSESLTGDGPLLSLN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by IKKB", "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "site_lbl": "Ser937" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "757", "end_pos": "757" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "942", "end_pos": "942" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q63369-1.928.928", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q63369-1.932.932", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q63369-1.942.942", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q63369-1.948.948", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63369-1.942.942", "start_pos": 942, "end_pos": 942, "uniprot_canonical_ac": "Q63369-1", "length": 973, "uniprot_id": "NFKB1_RAT", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "refseq_ac": "NP_001401941", "refseq_name": "nuclear factor NF-kappa-B p105 subunit isoform 1", "gene_name": "Nfkb1", "gene_names_uniprotkb": "Nfkb1", "gene_names_refseq": "EBP-1; NF-kB; NFKB-p50; Nfkb1; p50", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELRDNDSVCDSGVETSFRKL", "down_seq": "FSESLTGDGPLLSLNKMPHN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "site_lbl": "Ser942" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "757", "end_pos": "757" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "942", "end_pos": "942" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q63369-1.928.928", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q63369-1.932.932", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q63369-1.937.937", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q63369-1.948.948", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63369-1.948.948", "start_pos": 948, "end_pos": 948, "uniprot_canonical_ac": "Q63369-1", "length": 973, "uniprot_id": "NFKB1_RAT", "protein_name": "Nuclear factor NF-kappa-B p105 subunit", "refseq_ac": "NP_001401941", "refseq_name": "nuclear factor NF-kappa-B p105 subunit isoform 1", "gene_name": "Nfkb1", "gene_names_uniprotkb": "Nfkb1", "gene_names_refseq": "EBP-1; NF-kB; NFKB-p50; Nfkb1; p50", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SVCDSGVETSFRKLSFSESL", "down_seq": "GDGPLLSLNKMPHNYGQDGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q63369", "url": "https://www.uniprot.org/uniprotkb/Q63369" } ], "site_lbl": "Thr948" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "336", "end_pos": "336" }, { "start_pos": "449", "end_pos": "449" }, { "start_pos": "757", "end_pos": "757" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "912", "end_pos": "912" }, { "start_pos": "928", "end_pos": "928" }, { "start_pos": "932", "end_pos": "932" }, { "start_pos": "937", "end_pos": "937" }, { "start_pos": "942", "end_pos": "942" }, { "start_pos": "948", "end_pos": "948" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q63369-1.928.928", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q63369-1.932.932", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q63369-1.937.937", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q63369-1.942.942", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q66HA5-1.323.323", "start_pos": 323, "end_pos": 323, "uniprot_canonical_ac": "Q66HA5-1", "length": 941, "uniprot_id": "C2D1A_RAT", "protein_name": "Coiled-coil and C2 domain-containing protein 1A", "refseq_ac": "NP_001013891", "refseq_name": "coiled-coil and C2 domain-containing protein 1A isoform 1", "gene_name": "Cc2d1a", "gene_names_uniprotkb": "Cc2d1a", "gene_names_refseq": "Cc2d1a; RGD1306108", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LPPPPDQLSPEPPLPAAQPV", "down_seq": "PASTLTRPEVPQPPKNLLEA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr323", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "624", "end_pos": "624" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q66HA5-1.624.624", "start_pos": 624, "end_pos": 624, "uniprot_canonical_ac": "Q66HA5-1", "length": 941, "uniprot_id": "C2D1A_RAT", "protein_name": "Coiled-coil and C2 domain-containing protein 1A", "refseq_ac": "NP_001013891", "refseq_name": "coiled-coil and C2 domain-containing protein 1A isoform 1", "gene_name": "Cc2d1a", "gene_names_uniprotkb": "Cc2d1a", "gene_names_refseq": "Cc2d1a; RGD1306108", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AEDCKRSMDTLKQAFARSLP", "down_seq": "PAARFEQRTFSVIKIFPDLS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr624", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "624", "end_pos": "624" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q66HA5-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q66HA5-1", "length": 941, "uniprot_id": "C2D1A_RAT", "protein_name": "Coiled-coil and C2 domain-containing protein 1A", "refseq_ac": "NP_001013891", "refseq_name": "coiled-coil and C2 domain-containing protein 1A isoform 1", "gene_name": "Cc2d1a", "gene_names_uniprotkb": "Cc2d1a", "gene_names_refseq": "Cc2d1a; RGD1306108", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q66HA5", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q66HA5" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q66HA5", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q66HA5", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "Q66HA5", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q66HA5" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "624", "end_pos": "624" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q66HA5-1.247.247", "start_pos": 247, "end_pos": 247, "uniprot_canonical_ac": "Q66HA5-1", "length": 941, "uniprot_id": "C2D1A_RAT", "protein_name": "Coiled-coil and C2 domain-containing protein 1A", "refseq_ac": "NP_001013891", "refseq_name": "coiled-coil and C2 domain-containing protein 1A isoform 1", "gene_name": "Cc2d1a", "gene_names_uniprotkb": "Cc2d1a", "gene_names_refseq": "Cc2d1a; RGD1306108", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAPSTTAQTSAKPQLSPDPC", "down_seq": "PLARLQSLQHEYKVAALRAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5" } ], "site_lbl": "Ser247" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "624", "end_pos": "624" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q66HA5-1.434.434", "start_pos": 434, "end_pos": 434, "uniprot_canonical_ac": "Q66HA5-1", "length": 941, "uniprot_id": "C2D1A_RAT", "protein_name": "Coiled-coil and C2 domain-containing protein 1A", "refseq_ac": "NP_001013891", "refseq_name": "coiled-coil and C2 domain-containing protein 1A isoform 1", "gene_name": "Cc2d1a", "gene_names_uniprotkb": "Cc2d1a", "gene_names_refseq": "Cc2d1a; RGD1306108", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5" }, { "database": "iPTMnet", "id": "Q66HA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q66HA5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q66HA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q66HA5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQSLVGVLETAMKLANHEEG", "down_seq": "DEEEEETPKKNTPAASTAQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q66HA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q66HA5" } ], "site_lbl": "Ser434" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "624", "end_pos": "624" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q66HA5-1.91.91", "start_pos": 91, "end_pos": 91, "uniprot_canonical_ac": "Q66HA5-1", "length": 941, "uniprot_id": "C2D1A_RAT", "protein_name": "Coiled-coil and C2 domain-containing protein 1A", "refseq_ac": "NP_001013891", "refseq_name": "coiled-coil and C2 domain-containing protein 1A isoform 1", "gene_name": "Cc2d1a", "gene_names_uniprotkb": "Cc2d1a", "gene_names_refseq": "Cc2d1a; RGD1306108", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5" }, { "database": "iPTMnet", "id": "Q66HA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q66HA5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q66HA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q66HA5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EAIEKMARLCMRDLDEDEEG", "down_seq": "DEDVEADEDLLAELNEVLGE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q66HA5", "url": "https://www.uniprot.org/uniprotkb/Q66HA5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q66HA5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q66HA5" } ], "site_lbl": "Thr91" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "624", "end_pos": "624" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "247", "end_pos": "247" }, { "start_pos": "434", "end_pos": "434" }, { "start_pos": "91", "end_pos": "91" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q695P6-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "Q695P6-1", "length": 343, "uniprot_id": "C5AR2_RAT", "protein_name": "C5a anaphylatoxin chemotactic receptor 2", "refseq_ac": "NP_001003710", "refseq_name": "C5a anaphylatoxin chemotactic receptor 2", "gene_name": "C5ar2", "gene_names_uniprotkb": "C5ar2; C5l2; Gpr77", "gene_names_refseq": "C5L2; C5ar2; Gpr77", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q695P6", "url": "https://www.uniprot.org/uniprotkb/Q695P6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q695P6", "url": "https://www.uniprot.org/uniprotkb/Q695P6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ML", "down_seq": "DTTSKDYEYEYDQEQYSDLL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3", "evidence": [ { "id": "Q695P6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q695P6#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q695P6-1.326.326", "start_pos": 326, "end_pos": 326, "uniprot_canonical_ac": "Q695P6-1", "length": 343, "uniprot_id": "C5AR2_RAT", "protein_name": "C5a anaphylatoxin chemotactic receptor 2", "refseq_ac": "NP_001003710", "refseq_name": "C5a anaphylatoxin chemotactic receptor 2", "gene_name": "C5ar2", "gene_names_uniprotkb": "C5ar2; C5l2; Gpr77", "gene_names_refseq": "C5L2; C5ar2; Gpr77", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q695P6", "url": "https://www.uniprot.org/uniprotkb/Q695P6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q695P6", "url": "https://www.uniprot.org/uniprotkb/Q695P6" }, { "database": "iPTMnet", "id": "Q695P6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q695P6" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q695P6", "url": "https://www.uniprot.org/uniprotkb/Q695P6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q695P6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q695P6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CKSLQAACHWALRDLQDEEE", "down_seq": "AVTKVSTSQEMVSEMPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q695P6", "url": "https://www.uniprot.org/uniprotkb/Q695P6" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q695P6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q695P6" } ], "site_lbl": "Ser326" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "3", "end_pos": "3" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "326", "end_pos": "326" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AYT5-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "Q6AYT5-1", "length": 439, "uniprot_id": "ARMT1_RAT", "protein_name": "Damage-control phosphatase 1", "refseq_ac": "NP_001017447", "refseq_name": "damage-control phosphatase 1", "gene_name": "Dcph1", "gene_names_uniprotkb": "Dcph1; Armt1", "gene_names_refseq": "Armt1; Dcph1; RGD1305235", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYT5", "url": "https://www.uniprot.org/uniprotkb/Q6AYT5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AYT5", "url": "https://www.uniprot.org/uniprotkb/Q6AYT5" }, { "database": "iPTMnet", "id": "Q6AYT5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYT5" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AYT5", "url": "https://www.uniprot.org/uniprotkb/Q6AYT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AYT5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYT5", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAE", "down_seq": "PAFLSAQDVGSFAYLTIKDR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYT5", "url": "https://www.uniprot.org/uniprotkb/Q6AYT5" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AYT5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYT5" } ], "site_lbl": "Ser4" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "4", "end_pos": "4" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6MG11-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "Q6MG11-1", "length": 421, "uniprot_id": "ATAT_RAT", "protein_name": "Alpha-tubulin N-acetyltransferase 1", "refseq_ac": "NP_997663", "refseq_name": "alpha-tubulin N-acetyltransferase 1", "gene_name": "Atat1", "gene_names_uniprotkb": "Atat1; ATAT1; MEC17; Mec17", "gene_names_refseq": "3110080J08Rik; Atat1; Mec17; RGD1303066; TAT", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6MG11", "url": "https://www.uniprot.org/uniprotkb/Q6MG11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6MG11", "url": "https://www.uniprot.org/uniprotkb/Q6MG11" }, { "database": "iPTMnet", "id": "Q6MG11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6MG11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6MG11", "url": "https://www.uniprot.org/uniprotkb/Q6MG11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6MG11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6MG11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLNRAPRRATPPAHPPPRSS", "down_seq": "LGNSPDRGPLRPFVPEQELL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6MG11", "url": "https://www.uniprot.org/uniprotkb/Q6MG11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6MG11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6MG11" } ], "site_lbl": "Ser272" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "272", "end_pos": "272" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "315", "end_pos": "315" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q6MG11-1.276.276", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6MG11-1.276.276", "start_pos": 276, "end_pos": 276, "uniprot_canonical_ac": "Q6MG11-1", "length": 421, "uniprot_id": "ATAT_RAT", "protein_name": "Alpha-tubulin N-acetyltransferase 1", "refseq_ac": "NP_997663", "refseq_name": "alpha-tubulin N-acetyltransferase 1", "gene_name": "Atat1", "gene_names_uniprotkb": "Atat1; ATAT1; MEC17; Mec17", "gene_names_refseq": "3110080J08Rik; Atat1; Mec17; RGD1303066; TAT", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6MG11", "url": "https://www.uniprot.org/uniprotkb/Q6MG11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6MG11", "url": "https://www.uniprot.org/uniprotkb/Q6MG11" }, { "database": "iPTMnet", "id": "Q6MG11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6MG11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6MG11", "url": "https://www.uniprot.org/uniprotkb/Q6MG11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6MG11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6MG11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APRRATPPAHPPPRSSSLGN", "down_seq": "PDRGPLRPFVPEQELLRSLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6MG11", "url": "https://www.uniprot.org/uniprotkb/Q6MG11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6MG11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6MG11" } ], "site_lbl": "Ser276" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "272", "end_pos": "272" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "315", "end_pos": "315" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q6MG11-1.272.272", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6MG11-1.315.315", "start_pos": 315, "end_pos": 315, "uniprot_canonical_ac": "Q6MG11-1", "length": 421, "uniprot_id": "ATAT_RAT", "protein_name": "Alpha-tubulin N-acetyltransferase 1", "refseq_ac": "NP_997663", "refseq_name": "alpha-tubulin N-acetyltransferase 1", "gene_name": "Atat1", "gene_names_uniprotkb": "Atat1; ATAT1; MEC17; Mec17", "gene_names_refseq": "3110080J08Rik; Atat1; Mec17; RGD1303066; TAT", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6MG11", "url": "https://www.uniprot.org/uniprotkb/Q6MG11" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6MG11", "url": "https://www.uniprot.org/uniprotkb/Q6MG11" }, { "database": "iPTMnet", "id": "Q6MG11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6MG11" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6MG11", "url": "https://www.uniprot.org/uniprotkb/Q6MG11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6MG11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6MG11", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRLCPPHPTARLLLATDPGG", "down_seq": "PAQRRRTRETPWGLVAQSCH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6MG11", "url": "https://www.uniprot.org/uniprotkb/Q6MG11" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6MG11", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6MG11" } ], "site_lbl": "Ser315" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "272", "end_pos": "272" }, { "start_pos": "276", "end_pos": "276" }, { "start_pos": "315", "end_pos": "315" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q80ZG6-1.120.120", "start_pos": 120, "end_pos": 120, "uniprot_canonical_ac": "Q80ZG6-1", "length": 193, "uniprot_id": "BBC3_RAT", "protein_name": "Bcl-2-binding component 3", "refseq_ac": "NP_776209", "refseq_name": "bcl-2-binding component 3", "gene_name": "Bbc3", "gene_names_uniprotkb": "Bbc3; Puma", "gene_names_refseq": "Bbc3; Puma", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q80ZG6", "url": "https://www.uniprot.org/uniprotkb/Q80ZG6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AQQHLESPVPSAPEALAGGP", "down_seq": "QAAPGVRVEEEEWAREIGAQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr120", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q80ZG6-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "Q80ZG6-1", "length": 193, "uniprot_id": "BBC3_RAT", "protein_name": "Bcl-2-binding component 3", "refseq_ac": "NP_776209", "refseq_name": "bcl-2-binding component 3", "gene_name": "Bbc3", "gene_names_uniprotkb": "Bbc3; Puma", "gene_names_refseq": "Bbc3; Puma", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q80ZG6", "url": "https://www.uniprot.org/uniprotkb/Q80ZG6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AAPALLPAAYLCAPTAPPAV", "down_seq": "AALGGPRWPGGHRSRPRGPR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr69", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q80ZG6-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "Q80ZG6-1", "length": 193, "uniprot_id": "BBC3_RAT", "protein_name": "Bcl-2-binding component 3", "refseq_ac": "NP_776209", "refseq_name": "bcl-2-binding component 3", "gene_name": "Bbc3", "gene_names_uniprotkb": "Bbc3; Puma", "gene_names_refseq": "Bbc3; Puma", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q80ZG6", "url": "https://www.uniprot.org/uniprotkb/Q80ZG6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q80ZG6", "url": "https://www.uniprot.org/uniprotkb/Q80ZG6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MARARQEGS", "down_seq": "PEPVEGLARDSPRPFPLGRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q80ZG6", "url": "https://www.uniprot.org/uniprotkb/Q80ZG6" } ], "site_lbl": "Ser10" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "69", "end_pos": "69" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.211.211", "start_pos": 211, "end_pos": 211, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLLALYVAEIQRLQEKELDL", "down_seq": "ELDDPDSSYLQEARLKRKLI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser211" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSIIVLDDDDEDEAAAQPGP", "down_seq": "NPASNPVSPGPEASGPSESH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser25" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RQKRRARLLATSQSSDLPKA", "down_seq": "SDSGEGPSGVASQEDPTTPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser409" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q8VIB2-1.421.421", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.421.421", "start_pos": 421, "end_pos": 421, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QSSDLPKASSDSGEGPSGVA", "down_seq": "QEDPTTPKAETEDEEDDEES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser421" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q8VIB2-1.409.409", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.456.456", "start_pos": 456, "end_pos": 456, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EDDEESDDEEEEEEEEEEEA", "down_seq": "EDEDEDLEQLQEDQDDEEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Thr456" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.485.485", "start_pos": 485, "end_pos": 485, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLQEDQDDEEEEEGDNEDDK", "down_seq": "PASPSPIFRRKEFSNPQKGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser485" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8VIB2-1.488.488", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8VIB2-1.490.490", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8VIB2-1.499.499", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.488.488", "start_pos": 488, "end_pos": 488, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" }, { "database": "iPTMnet", "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDQDDEEEEEGDNEDDKSPA", "down_seq": "PSPIFRRKEFSNPQKGSGPQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2" } ], "site_lbl": "Ser488" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8VIB2-1.485.485", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8VIB2-1.490.490", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q8VIB2-1.499.499", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VIB2-1.490.490", "start_pos": 490, "end_pos": 490, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" }, { "database": "iPTMnet", "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QDDEEEEEGDNEDDKSPASP", "down_seq": "PIFRRKEFSNPQKGSGPQEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2" } ], "site_lbl": "Ser490" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8VIB2-1.485.485", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8VIB2-1.488.488", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8VIB2-1.499.499", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VIB2-1.499.499", "start_pos": 499, "end_pos": 499, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DNEDDKSPASPSPIFRRKEF", "down_seq": "NPQKGSGPQEEQQERGLTGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser499" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8VIB2-1.485.485", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q8VIB2-1.488.488", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q8VIB2-1.490.490", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.527.527", "start_pos": 527, "end_pos": 527, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" }, { "database": "iPTMnet", "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PQEEQQERGLTGTPASPLEA", "down_seq": "PGLPSTDAESSGEQLQERLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2" } ], "site_lbl": "Ser527" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VIB2-1.551.551", "start_pos": 551, "end_pos": 551, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" }, { "database": "iPTMnet", "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSTDAESSGEQLQERLLAGE", "down_seq": "PVSQLSELDMEALPEETIPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2" } ], "site_lbl": "Ser551" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q8VIB2-1.571.571", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VIB2-1.571.571", "start_pos": 571, "end_pos": 571, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" }, { "database": "iPTMnet", "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPVSQLSELDMEALPEETIP", "down_seq": "PEERGISSSRRKSDSSLPTI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q8VIB2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VIB2" } ], "site_lbl": "Ser571" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8VIB2-1.551.551", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VIB2-1.617.617", "start_pos": 617, "end_pos": 617, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AMVTSTSFNGRVSSHPCRDA", "down_seq": "PPSKRFRKEKKQLGPGPLGN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser617" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.661.661", "start_pos": 661, "end_pos": 661, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKQTMAQQDSGWKISVLSTP", "down_seq": "SPLASVGPVADSSTRVDSPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser661" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8VIB2-1.662.662", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q8VIB2-1.679.679", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.662.662", "start_pos": 662, "end_pos": 662, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KQTMAQQDSGWKISVLSTPS", "down_seq": "PLASVGPVADSSTRVDSPSH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser662" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8VIB2-1.661.661", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q8VIB2-1.679.679", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.679.679", "start_pos": 679, "end_pos": 679, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPSSPLASVGPVADSSTRVD", "down_seq": "PSHELVTSSLCNPSPSLILQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser679" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q8VIB2-1.661.661", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q8VIB2-1.662.662", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8VIB2-1.693.693", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.693.693", "start_pos": 693, "end_pos": 693, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSTRVDSPSHELVTSSLCNP", "down_seq": "PSLILQTPQSQSPRPCIYKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser693" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8VIB2-1.679.679", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.728.728", "start_pos": 728, "end_pos": 728, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PCIYKTSVATQCDPEEIIVL", "down_seq": "DSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser728" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q8VIB2-1.730.730", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VIB2-1.730.730", "start_pos": 730, "end_pos": 730, "uniprot_canonical_ac": "Q8VIB2-1", "length": 731, "uniprot_id": "DAXX_RAT", "protein_name": "Death domain-associated protein 6", "refseq_ac": "", "refseq_name": "", "gene_name": "Daxx", "gene_names_uniprotkb": "Daxx", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IYKTSVATQCDPEEIIVLSD", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VIB2", "url": "https://www.uniprot.org/uniprotkb/Q8VIB2" } ], "site_lbl": "Ser730" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "25", "end_pos": "25" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "421", "end_pos": "421" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "485", "end_pos": "485" }, { "start_pos": "488", "end_pos": "488" }, { "start_pos": "490", "end_pos": "490" }, { "start_pos": "499", "end_pos": "499" }, { "start_pos": "527", "end_pos": "527" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "571", "end_pos": "571" }, { "start_pos": "617", "end_pos": "617" }, { "start_pos": "661", "end_pos": "661" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "679", "end_pos": "679" }, { "start_pos": "693", "end_pos": "693" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "730", "end_pos": "730" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8VIB2-1.728.728", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q920K5-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "Q920K5-1", "length": 145, "uniprot_id": "BAALC_RAT", "protein_name": "Brain and acute leukemia cytoplasmic protein", "refseq_ac": "NP_658907", "refseq_name": "brain and acute leukemia cytoplasmic protein", "gene_name": "Baalc", "gene_names_uniprotkb": "Baalc", "gene_names_refseq": "Baalc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920K5", "url": "https://www.uniprot.org/uniprotkb/Q920K5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "BAALC 1-6-8 protein is targeted to postsynaptic lipid rafts by its N-terminal myristoylation and palmitoylation, and interacts with alpha, but not beta, subunit of Ca/calmodulin-dependent protein kinase II.", "journal": "Journal of neurochemistry", "date": "2005", "authors": "Wang X, Tian QB, Okano A, Sakagami H, Moon IS, Kondo H, Endo S, Suzuki T", "evidence": [ { "database": "UniProtKB", "id": "Q920K5", "url": "https://www.uniprot.org/uniprotkb/Q920K5" } ], "reference": [ { "type": "PubMed", "id": "15659234", "url": "https://glygen.org/publication/PubMed/15659234" } ] } ], "crossref": [ { "id": "Q920K5", "url": "https://www.uniprot.org/uniprotkb/Q920K5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15659234", "url": "https://glygen.org/publication/PubMed/15659234", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "M", "down_seq": "CGGSRADAIEPRYYESWTRE", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Abolishes myristoylation.", "evidence": [ { "database": "UniProtKB", "id": "Q920K5", "url": "https://www.uniprot.org/uniprotkb/Q920K5" }, { "database": "PubMed", "id": "15659234", "url": "https://glygen.org/publication/PubMed/15659234" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" }, { "start_pos": "3", "end_pos": "3" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q920K5-1.3.3", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q920K5-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "Q920K5-1", "length": 145, "uniprot_id": "BAALC_RAT", "protein_name": "Brain and acute leukemia cytoplasmic protein", "refseq_ac": "NP_658907", "refseq_name": "brain and acute leukemia cytoplasmic protein", "gene_name": "Baalc", "gene_names_uniprotkb": "Baalc", "gene_names_refseq": "Baalc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q920K5", "url": "https://www.uniprot.org/uniprotkb/Q920K5" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "BAALC 1-6-8 protein is targeted to postsynaptic lipid rafts by its N-terminal myristoylation and palmitoylation, and interacts with alpha, but not beta, subunit of Ca/calmodulin-dependent protein kinase II.", "journal": "Journal of neurochemistry", "date": "2005", "authors": "Wang X, Tian QB, Okano A, Sakagami H, Moon IS, Kondo H, Endo S, Suzuki T", "evidence": [ { "database": "UniProtKB", "id": "Q920K5", "url": "https://www.uniprot.org/uniprotkb/Q920K5" } ], "reference": [ { "type": "PubMed", "id": "15659234", "url": "https://glygen.org/publication/PubMed/15659234" } ] } ], "crossref": [ { "id": "Q920K5", "url": "https://www.uniprot.org/uniprotkb/Q920K5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15659234", "url": "https://glygen.org/publication/PubMed/15659234", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "MG", "down_seq": "GGSRADAIEPRYYESWTRET", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Abolishes palmitoylation.", "evidence": [ { "database": "UniProtKB", "id": "Q920K5", "url": "https://www.uniprot.org/uniprotkb/Q920K5" }, { "database": "PubMed", "id": "15659234", "url": "https://glygen.org/publication/PubMed/15659234" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" }, { "start_pos": "3", "end_pos": "3" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q920K5-1.2.2", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ET61-1.322.322", "start_pos": 322, "end_pos": 322, "uniprot_canonical_ac": "Q9ET61-1", "length": 643, "uniprot_id": "C1QR1_RAT", "protein_name": "Complement component C1q receptor", "refseq_ac": "NP_445835", "refseq_name": "complement component C1q receptor precursor", "gene_name": "Cd93", "gene_names_uniprotkb": "Cd93; C1qr1; C1qrp", "gene_names_refseq": "C1qRp; C1qr1; Cd93; Ly68", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PCSSNPCTGGGMCHSVPLSE", "down_seq": "YTCHCPRGYQLDSSQVHCVD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn322", "evidence": [ { "id": "Q9ET61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ET61#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "638", "end_pos": "638" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "618", "end_pos": "618" }, { "start_pos": "619", "end_pos": "619" }, { "start_pos": "635", "end_pos": "635" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ET61-1.498.498", "start_pos": 498, "end_pos": 498, "uniprot_canonical_ac": "Q9ET61-1", "length": 643, "uniprot_id": "C1QR1_RAT", "protein_name": "Complement component C1q receptor", "refseq_ac": "NP_445835", "refseq_name": "complement component C1q receptor precursor", "gene_name": "Cd93", "gene_names_uniprotkb": "Cd93; C1qr1; C1qrp", "gene_names_refseq": "C1qRp; C1qr1; Cd93; Ly68", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EDKGDGKESTVPLTEMPGSL", "down_seq": "GSKDVSNRAQTTDLSIQSDS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn498", "evidence": [ { "id": "Q9ET61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ET61#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "638", "end_pos": "638" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "618", "end_pos": "618" }, { "start_pos": "619", "end_pos": "619" }, { "start_pos": "635", "end_pos": "635" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ET61-1.638.638", "start_pos": 638, "end_pos": 638, "uniprot_canonical_ac": "Q9ET61-1", "length": 643, "uniprot_id": "C1QR1_RAT", "protein_name": "Complement component C1q receptor", "refseq_ac": "NP_445835", "refseq_name": "complement component C1q receptor precursor", "gene_name": "Cd93", "gene_names_uniprotkb": "Cd93; C1qr1; C1qrp", "gene_names_refseq": "C1qRp; C1qr1; Cd93; Ly68", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SYSWIPERAESRAPENQYSP", "down_seq": "PGTDC", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr638", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "638", "end_pos": "638" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "618", "end_pos": "618" }, { "start_pos": "619", "end_pos": "619" }, { "start_pos": "635", "end_pos": "635" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9ET61-1.618.618", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "Q9ET61-1.619.619", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9ET61-1.635.635", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ET61-1.618.618", "start_pos": 618, "end_pos": 618, "uniprot_canonical_ac": "Q9ET61-1", "length": 643, "uniprot_id": "C1QR1_RAT", "protein_name": "Complement component C1q receptor", "refseq_ac": "NP_445835", "refseq_name": "complement component C1q receptor precursor", "gene_name": "Cd93", "gene_names_uniprotkb": "Cd93; C1qr1; C1qrp", "gene_names_refseq": "C1qRp; C1qr1; Cd93; Ly68", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61" }, { "database": "iPTMnet", "id": "Q9ET61", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ET61" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9ET61", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ET61", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKRKAKKEEIKEKKAQNAAD", "down_seq": "YSWIPERAESRAPENQYSPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9ET61", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9ET61" } ], "site_lbl": "Ser618" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "638", "end_pos": "638" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "618", "end_pos": "618" }, { "start_pos": "619", "end_pos": "619" }, { "start_pos": "635", "end_pos": "635" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9ET61-1.619.619", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9ET61-1.635.635", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9ET61-1.638.638", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9ET61-1.619.619", "start_pos": 619, "end_pos": 619, "uniprot_canonical_ac": "Q9ET61-1", "length": 643, "uniprot_id": "C1QR1_RAT", "protein_name": "Complement component C1q receptor", "refseq_ac": "NP_445835", "refseq_name": "complement component C1q receptor precursor", "gene_name": "Cd93", "gene_names_uniprotkb": "Cd93; C1qr1; C1qrp", "gene_names_refseq": "C1qRp; C1qr1; Cd93; Ly68", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KRKAKKEEIKEKKAQNAADS", "down_seq": "SWIPERAESRAPENQYSPTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61" } ], "site_lbl": "Tyr619" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "638", "end_pos": "638" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "618", "end_pos": "618" }, { "start_pos": "619", "end_pos": "619" }, { "start_pos": "635", "end_pos": "635" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9ET61-1.618.618", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9ET61-1.635.635", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9ET61-1.638.638", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9ET61-1.635.635", "start_pos": 635, "end_pos": 635, "uniprot_canonical_ac": "Q9ET61-1", "length": 643, "uniprot_id": "C1QR1_RAT", "protein_name": "Complement component C1q receptor", "refseq_ac": "NP_445835", "refseq_name": "complement component C1q receptor precursor", "gene_name": "Cd93", "gene_names_uniprotkb": "Cd93; C1qr1; C1qrp", "gene_names_refseq": "C1qRp; C1qr1; Cd93; Ly68", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "AADSYSWIPERAESRAPENQ", "down_seq": "SPTPGTDC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9ET61", "url": "https://www.uniprot.org/uniprotkb/Q9ET61" } ], "site_lbl": "Tyr635" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "322", "end_pos": "322" }, { "start_pos": "498", "end_pos": "498" }, { "start_pos": "638", "end_pos": "638" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "618", "end_pos": "618" }, { "start_pos": "619", "end_pos": "619" }, { "start_pos": "635", "end_pos": "635" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9ET61-1.618.618", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9ET61-1.619.619", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9ET61-1.638.638", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JHL4-1.160.160", "start_pos": 160, "end_pos": 160, "uniprot_canonical_ac": "Q9JHL4-1", "length": 436, "uniprot_id": "DBNL_RAT", "protein_name": "Drebrin-like protein", "refseq_ac": "NP_001264140", "refseq_name": "drebrin-like protein isoform 1", "gene_name": "Dbnl", "gene_names_uniprotkb": "Dbnl; Sh3p7", "gene_names_refseq": "Dbnl; Sh3p7; abp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YSFHKESSCFQDVGPQAPVG", "down_seq": "VYQKTNAVSEIKRVGKDNFW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "site_lbl": "Ser160" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "350", "end_pos": "350" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JHL4-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "Q9JHL4-1", "length": 436, "uniprot_id": "DBNL_RAT", "protein_name": "Drebrin-like protein", "refseq_ac": "NP_001264140", "refseq_name": "drebrin-like protein isoform 1", "gene_name": "Dbnl", "gene_names_uniprotkb": "Dbnl; Sh3p7", "gene_names_refseq": "Dbnl; Sh3p7; abp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SRNGPALQEAYVRVVTEKSP", "down_seq": "DWALFTYEGNSNDIRVAGTG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "site_lbl": "Thr26" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "350", "end_pos": "350" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JHL4-1.277.277", "start_pos": 277, "end_pos": 277, "uniprot_canonical_ac": "Q9JHL4-1", "length": 436, "uniprot_id": "DBNL_RAT", "protein_name": "Drebrin-like protein", "refseq_ac": "NP_001264140", "refseq_name": "drebrin-like protein isoform 1", "gene_name": "Dbnl", "gene_names_uniprotkb": "Dbnl; Sh3p7", "gene_names_refseq": "Dbnl; Sh3p7; abp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SAGQQAPHPREIFKQKERAM", "down_seq": "TTSVSSSQPGKLRSPFLQKQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "site_lbl": "Ser277" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "350", "end_pos": "350" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9JHL4-1.280.280", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9JHL4-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9JHL4-1.291.291", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JHL4-1.280.280", "start_pos": 280, "end_pos": 280, "uniprot_canonical_ac": "Q9JHL4-1", "length": 436, "uniprot_id": "DBNL_RAT", "protein_name": "Drebrin-like protein", "refseq_ac": "NP_001264140", "refseq_name": "drebrin-like protein isoform 1", "gene_name": "Dbnl", "gene_names_uniprotkb": "Dbnl; Sh3p7", "gene_names_refseq": "Dbnl; Sh3p7; abp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQAPHPREIFKQKERAMSTT", "down_seq": "VSSSQPGKLRSPFLQKQFTQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "site_lbl": "Ser280" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "350", "end_pos": "350" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9JHL4-1.277.277", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9JHL4-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9JHL4-1.291.291", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9JHL4-1.299.299", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JHL4-1.283.283", "start_pos": 283, "end_pos": 283, "uniprot_canonical_ac": "Q9JHL4-1", "length": 436, "uniprot_id": "DBNL_RAT", "protein_name": "Drebrin-like protein", "refseq_ac": "NP_001264140", "refseq_name": "drebrin-like protein isoform 1", "gene_name": "Dbnl", "gene_names_uniprotkb": "Dbnl; Sh3p7", "gene_names_refseq": "Dbnl; Sh3p7; abp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PHPREIFKQKERAMSTTSVS", "down_seq": "SQPGKLRSPFLQKQFTQPEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "site_lbl": "Ser283" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "350", "end_pos": "350" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9JHL4-1.277.277", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9JHL4-1.280.280", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9JHL4-1.291.291", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9JHL4-1.299.299", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JHL4-1.291.291", "start_pos": 291, "end_pos": 291, "uniprot_canonical_ac": "Q9JHL4-1", "length": 436, "uniprot_id": "DBNL_RAT", "protein_name": "Drebrin-like protein", "refseq_ac": "NP_001264140", "refseq_name": "drebrin-like protein isoform 1", "gene_name": "Dbnl", "gene_names_uniprotkb": "Dbnl; Sh3p7", "gene_names_refseq": "Dbnl; Sh3p7; abp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" }, { "database": "iPTMnet", "id": "Q9JHL4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JHL4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JHL4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JHL4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QKERAMSTTSVSSSQPGKLR", "down_seq": "PFLQKQFTQPEASYGREPTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JHL4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JHL4" } ], "site_lbl": "Ser291" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "350", "end_pos": "350" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9JHL4-1.277.277", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9JHL4-1.280.280", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9JHL4-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9JHL4-1.299.299", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9JHL4-1.311.311", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JHL4-1.299.299", "start_pos": 299, "end_pos": 299, "uniprot_canonical_ac": "Q9JHL4-1", "length": 436, "uniprot_id": "DBNL_RAT", "protein_name": "Drebrin-like protein", "refseq_ac": "NP_001264140", "refseq_name": "drebrin-like protein isoform 1", "gene_name": "Dbnl", "gene_names_uniprotkb": "Dbnl; Sh3p7", "gene_names_refseq": "Dbnl; Sh3p7; abp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" }, { "database": "iPTMnet", "id": "Q9JHL4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JHL4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JHL4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JHL4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TSVSSSQPGKLRSPFLQKQF", "down_seq": "QPEASYGREPTSPVSRPAAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JHL4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JHL4" } ], "site_lbl": "Thr299" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "350", "end_pos": "350" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9JHL4-1.280.280", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9JHL4-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9JHL4-1.291.291", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9JHL4-1.311.311", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JHL4-1.311.311", "start_pos": 311, "end_pos": 311, "uniprot_canonical_ac": "Q9JHL4-1", "length": 436, "uniprot_id": "DBNL_RAT", "protein_name": "Drebrin-like protein", "refseq_ac": "NP_001264140", "refseq_name": "drebrin-like protein isoform 1", "gene_name": "Dbnl", "gene_names_uniprotkb": "Dbnl; Sh3p7", "gene_names_refseq": "Dbnl; Sh3p7; abp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" }, { "database": "iPTMnet", "id": "Q9JHL4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JHL4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9JHL4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JHL4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPFLQKQFTQPEASYGREPT", "down_seq": "PVSRPAAGVCEELAPSTPPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9JHL4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9JHL4" } ], "site_lbl": "Ser311" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "350", "end_pos": "350" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9JHL4-1.291.291", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9JHL4-1.299.299", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9JHL4-1.340.340", "start_pos": 340, "end_pos": 340, "uniprot_canonical_ac": "Q9JHL4-1", "length": 436, "uniprot_id": "DBNL_RAT", "protein_name": "Drebrin-like protein", "refseq_ac": "NP_001264140", "refseq_name": "drebrin-like protein isoform 1", "gene_name": "Dbnl", "gene_names_uniprotkb": "Dbnl; Sh3p7", "gene_names_refseq": "Dbnl; Sh3p7; abp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VCEELAPSTPPSAQTDDEPT", "down_seq": "EVPSEQETLYEEPPPVQQPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "site_lbl": "Tyr340" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "350", "end_pos": "350" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q9JHL4-1.350.350", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9JHL4-1.350.350", "start_pos": 350, "end_pos": 350, "uniprot_canonical_ac": "Q9JHL4-1", "length": 436, "uniprot_id": "DBNL_RAT", "protein_name": "Drebrin-like protein", "refseq_ac": "NP_001264140", "refseq_name": "drebrin-like protein isoform 1", "gene_name": "Dbnl", "gene_names_uniprotkb": "Dbnl; Sh3p7", "gene_names_refseq": "Dbnl; Sh3p7; abp1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PSAQTDDEPTYEVPSEQETL", "down_seq": "EEPPPVQQPGAGSGHIDNYM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9JHL4", "url": "https://www.uniprot.org/uniprotkb/Q9JHL4" } ], "site_lbl": "Tyr350" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "160", "end_pos": "160" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "277", "end_pos": "277" }, { "start_pos": "280", "end_pos": "280" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "350", "end_pos": "350" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9JHL4-1.340.340", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q29RW1-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q29RW1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162" } ] } ], "crossref": [ { "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q29RW1", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "34502162", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34502162" }, { "id": "Q29RW1", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q29RW1" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1092.1092", "start_pos": 1092, "end_pos": 1092, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DIENDKQQLDEKLKKKEFEM", "down_seq": "NLQSKIEDEQALGMQLQKKI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1092" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q29RW1-1.1096.1096", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1096.1096", "start_pos": 1096, "end_pos": 1096, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DKQQLDEKLKKKEFEMSNLQ", "down_seq": "KIEDEQALGMQLQKKIKELQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1096" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q29RW1-1.1092.1092", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1162.1162", "start_pos": 1162, "end_pos": 1162, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DLSRELEEISERLEEAGGAT", "down_seq": "AQIEMNKKREAEFQKMRRDL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1162" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1237.1237", "start_pos": 1237, "end_pos": 1237, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VKQKLEKEKSELKMEIDDLA", "down_seq": "NMETVSKAKGNLEKMCRTLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1237" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q29RW1-1.1241.1241", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q29RW1-1.1243.1243", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q29RW1-1.1255.1255", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1241.1241", "start_pos": 1241, "end_pos": 1241, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LEKEKSELKMEIDDLASNME", "down_seq": "VSKAKGNLEKMCRTLEDQLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr1241" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q29RW1-1.1237.1237", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q29RW1-1.1243.1243", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q29RW1-1.1255.1255", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q29RW1-1.1261.1261", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1243.1243", "start_pos": 1243, "end_pos": 1243, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEKSELKMEIDDLASNMETV", "down_seq": "KAKGNLEKMCRTLEDQLSEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1243" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q29RW1-1.1237.1237", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q29RW1-1.1241.1241", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q29RW1-1.1255.1255", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q29RW1-1.1261.1261", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1255.1255", "start_pos": 1255, "end_pos": 1255, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LASNMETVSKAKGNLEKMCR", "down_seq": "LEDQLSEVKTKEEEQQRLIN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr1255" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q29RW1-1.1237.1237", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q29RW1-1.1241.1241", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q29RW1-1.1243.1243", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q29RW1-1.1261.1261", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q29RW1-1.1265.1265", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1261.1261", "start_pos": 1261, "end_pos": 1261, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TVSKAKGNLEKMCRTLEDQL", "down_seq": "EVKTKEEEQQRLINELSAQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1261" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q29RW1-1.1241.1241", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q29RW1-1.1243.1243", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q29RW1-1.1255.1255", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q29RW1-1.1265.1265", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q29RW1-1.1278.1278", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1265.1265", "start_pos": 1265, "end_pos": 1265, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AKGNLEKMCRTLEDQLSEVK", "down_seq": "KEEEQQRLINELSAQKARLH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr1265" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q29RW1-1.1255.1255", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q29RW1-1.1261.1261", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q29RW1-1.1278.1278", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1278.1278", "start_pos": 1278, "end_pos": 1278, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DQLSEVKTKEEEQQRLINEL", "down_seq": "AQKARLHTESGEFSRQLDEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1278" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q29RW1-1.1261.1261", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q29RW1-1.1265.1265", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q29RW1-1.1286.1286", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q29RW1-1.1288.1288", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q29RW1-1.1292.1292", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1286.1286", "start_pos": 1286, "end_pos": 1286, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KEEEQQRLINELSAQKARLH", "down_seq": "ESGEFSRQLDEKDAMVSQLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr1286" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q29RW1-1.1278.1278", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q29RW1-1.1288.1288", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q29RW1-1.1292.1292", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q29RW1-1.1303.1303", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q29RW1-1.1306.1306", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1288.1288", "start_pos": 1288, "end_pos": 1288, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEQQRLINELSAQKARLHTE", "down_seq": "GEFSRQLDEKDAMVSQLSRG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1288" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q29RW1-1.1278.1278", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q29RW1-1.1286.1286", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q29RW1-1.1292.1292", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q29RW1-1.1303.1303", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q29RW1-1.1306.1306", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1292.1292", "start_pos": 1292, "end_pos": 1292, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLINELSAQKARLHTESGEF", "down_seq": "RQLDEKDAMVSQLSRGKQAF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1292" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q29RW1-1.1278.1278", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q29RW1-1.1286.1286", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q29RW1-1.1288.1288", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q29RW1-1.1303.1303", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q29RW1-1.1306.1306", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1303.1303", "start_pos": 1303, "end_pos": 1303, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLHTESGEFSRQLDEKDAMV", "down_seq": "QLSRGKQAFTQQIEELKRQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1303" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q29RW1-1.1286.1286", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q29RW1-1.1288.1288", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q29RW1-1.1292.1292", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q29RW1-1.1306.1306", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1306.1306", "start_pos": 1306, "end_pos": 1306, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TESGEFSRQLDEKDAMVSQL", "down_seq": "RGKQAFTQQIEELKRQLEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1306" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q29RW1-1.1286.1286", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q29RW1-1.1288.1288", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q29RW1-1.1292.1292", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q29RW1-1.1303.1303", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1413.1413", "start_pos": 1413, "end_pos": 1413, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKKKLAQRLQDAEEHVEAVN", "down_seq": "KCASLEKTKQRLQNEVEDLM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1413" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1464.1464", "start_pos": 1464, "end_pos": 1464, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "AALDKKQRNFDKVLAEWKQK", "down_seq": "EETQAELEASQKESRSLSTE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Tyr1464" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q29RW1-1.1467.1467", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q29RW1-1.1474.1474", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1467.1467", "start_pos": 1467, "end_pos": 1467, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DKKQRNFDKVLAEWKQKYEE", "down_seq": "QAELEASQKESRSLSTELFK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr1467" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q29RW1-1.1464.1464", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q29RW1-1.1474.1474", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1474.1474", "start_pos": 1474, "end_pos": 1474, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DKVLAEWKQKYEETQAELEA", "down_seq": "QKESRSLSTELFKVKNAYEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1474" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q29RW1-1.1464.1464", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q29RW1-1.1467.1467", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q29RW1-1.1492.1492", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1492.1492", "start_pos": 1492, "end_pos": 1492, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EASQKESRSLSTELFKVKNA", "down_seq": "EESLDQLETLKRENKNLQQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Tyr1492" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q29RW1-1.1474.1474", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q29RW1-1.1495.1495", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q29RW1-1.1501.1501", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1495.1495", "start_pos": 1495, "end_pos": 1495, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QKESRSLSTELFKVKNAYEE", "down_seq": "LDQLETLKRENKNLQQEISD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1495" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q29RW1-1.1492.1492", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q29RW1-1.1501.1501", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q29RW1-1.1514.1514", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1501.1501", "start_pos": 1501, "end_pos": 1501, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LSTELFKVKNAYEESLDQLE", "down_seq": "LKRENKNLQQEISDLTEQIA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr1501" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q29RW1-1.1492.1492", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q29RW1-1.1495.1495", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q29RW1-1.1514.1514", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q29RW1-1.1517.1517", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1514.1514", "start_pos": 1514, "end_pos": 1514, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESLDQLETLKRENKNLQQEI", "down_seq": "DLTEQIAEGGKHIHELEKIK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1514" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q29RW1-1.1495.1495", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q29RW1-1.1501.1501", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q29RW1-1.1517.1517", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1517.1517", "start_pos": 1517, "end_pos": 1517, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DQLETLKRENKNLQQEISDL", "down_seq": "EQIAEGGKHIHELEKIKKQI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr1517" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q29RW1-1.1501.1501", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q29RW1-1.1514.1514", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1542.1542", "start_pos": 1542, "end_pos": 1542, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EGGKHIHELEKIKKQIDQEK", "down_seq": "ELQASLEEAEASLEHEEGKI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1542" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q29RW1-1.1547.1547", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q29RW1-1.1554.1554", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1547.1547", "start_pos": 1547, "end_pos": 1547, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IHELEKIKKQIDQEKSELQA", "down_seq": "LEEAEASLEHEEGKILRIQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1547" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q29RW1-1.1542.1542", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q29RW1-1.1554.1554", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1554.1554", "start_pos": 1554, "end_pos": 1554, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKQIDQEKSELQASLEEAEA", "down_seq": "LEHEEGKILRIQLELNQVKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1554" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q29RW1-1.1542.1542", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q29RW1-1.1547.1547", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q29RW1-1.1574.1574", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1574.1574", "start_pos": 1574, "end_pos": 1574, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLEHEEGKILRIQLELNQVK", "down_seq": "EIDRKIAEKDEEIDQLKRNH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1574" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q29RW1-1.1554.1554", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1600.1600", "start_pos": 1600, "end_pos": 1600, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IAEKDEEIDQLKRNHLRVVE", "down_seq": "MQSTLDAEIRSRNDALRIKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1600" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q29RW1-1.1603.1603", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1603.1603", "start_pos": 1603, "end_pos": 1603, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KDEEIDQLKRNHLRVVESMQ", "down_seq": "TLDAEIRSRNDALRIKKKME", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1603" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q29RW1-1.1600.1600", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1714.1714", "start_pos": 1714, "end_pos": 1714, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASLEQTERSRRVAEQELLDA", "down_seq": "ERVQLLHTQNTSLINTKKKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1714" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q29RW1-1.1726.1726", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q29RW1-1.1730.1730", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1726.1726", "start_pos": 1726, "end_pos": 1726, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AEQELLDASERVQLLHTQNT", "down_seq": "LINTKKKLETDISQIQGEME", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1726" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q29RW1-1.1714.1714", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q29RW1-1.1730.1730", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q29RW1-1.1736.1736", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q29RW1-1.1739.1739", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1730.1730", "start_pos": 1730, "end_pos": 1730, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LLDASERVQLLHTQNTSLIN", "down_seq": "KKKLETDISQIQGEMEDIVQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr1730" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q29RW1-1.1714.1714", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q29RW1-1.1726.1726", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q29RW1-1.1736.1736", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q29RW1-1.1739.1739", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1736.1736", "start_pos": 1736, "end_pos": 1736, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RVQLLHTQNTSLINTKKKLE", "down_seq": "DISQIQGEMEDIVQEARNAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr1736" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q29RW1-1.1726.1726", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q29RW1-1.1730.1730", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q29RW1-1.1739.1739", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.1739.1739", "start_pos": 1739, "end_pos": 1739, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLHTQNTSLINTKKKLETDI", "down_seq": "QIQGEMEDIVQEARNAEEKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser1739" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q29RW1-1.1726.1726", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q29RW1-1.1730.1730", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q29RW1-1.1736.1736", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.36.36", "start_pos": 36, "end_pos": 36, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YLRKSEKERIEAQNKPFDAK", "down_seq": "SVFVVDAKESYVKATVQSRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser36" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.389.389", "start_pos": 389, "end_pos": 389, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "QKQREEQAEPDGTEVADKAA", "down_seq": "LTSLNSADLLKALCYPRVKV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Tyr389" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q29RW1-1.391.391", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q29RW1-1.392.392", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.391.391", "start_pos": 391, "end_pos": 391, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QREEQAEPDGTEVADKAAYL", "down_seq": "SLNSADLLKALCYPRVKVGN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr391" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q29RW1-1.389.389", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q29RW1-1.392.392", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.392.392", "start_pos": 392, "end_pos": 392, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "REEQAEPDGTEVADKAAYLT", "down_seq": "LNSADLLKALCYPRVKVGNE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser392" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q29RW1-1.389.389", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q29RW1-1.391.391", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.419.419", "start_pos": 419, "end_pos": 419, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LKALCYPRVKVGNEYVTKGQ", "down_seq": "VQQVYNSVGALAKAMYEKMF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr419" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q29RW1-1.424.424", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.424.424", "start_pos": 424, "end_pos": 424, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "YPRVKVGNEYVTKGQTVQQV", "down_seq": "NSVGALAKAMYEKMFLWMVT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Tyr424" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q29RW1-1.419.419", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.625.625", "start_pos": 625, "end_pos": 625, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NETVVGLYQKSGLKTLAFLF", "down_seq": "GGQAAEAEGGGGKKGGKKKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser625" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KESYVKATVQSREGGKVTAK", "down_seq": "EGGATVTVKEDQVFSMNPPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr64" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q29RW1-1.69.69", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q29RW1-1.79.79", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KATVQSREGGKVTAKTEGGA", "down_seq": "VTVKEDQVFSMNPPKYDKIE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr69" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q29RW1-1.64.64", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q29RW1-1.79.79", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.776.776", "start_pos": 776, "end_pos": 776, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DHTQYKFGHTKVFFKAGLLG", "down_seq": "LEEMRDEKLAQLITRTQAVC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Thr776" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q29RW1-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "Q29RW1-1", "length": 1939, "uniprot_id": "MYH4_RAT", "protein_name": "Myosin-4", "refseq_ac": "NP_062198", "refseq_name": "myosin-4", "gene_name": "Myh1; Myh2; Myh4", "gene_names_uniprotkb": "Myh1; Myh2; Myh4; Myh1", "gene_names_refseq": "Myh4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KVTAKTEGGATVTVKEDQVF", "down_seq": "MNPPKYDKIEDMAMMTHLHE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q29RW1", "url": "https://www.uniprot.org/uniprotkb/Q29RW1" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q29RW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q29RW1" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1092", "end_pos": "1092" }, { "start_pos": "1096", "end_pos": "1096" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1237", "end_pos": "1237" }, { "start_pos": "1241", "end_pos": "1241" }, { "start_pos": "1243", "end_pos": "1243" }, { "start_pos": "1255", "end_pos": "1255" }, { "start_pos": "1261", "end_pos": "1261" }, { "start_pos": "1265", "end_pos": "1265" }, { "start_pos": "1278", "end_pos": "1278" }, { "start_pos": "1286", "end_pos": "1286" }, { "start_pos": "1288", "end_pos": "1288" }, { "start_pos": "1292", "end_pos": "1292" }, { "start_pos": "1303", "end_pos": "1303" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1413", "end_pos": "1413" }, { "start_pos": "1464", "end_pos": "1464" }, { "start_pos": "1467", "end_pos": "1467" }, { "start_pos": "1474", "end_pos": "1474" }, { "start_pos": "1492", "end_pos": "1492" }, { "start_pos": "1495", "end_pos": "1495" }, { "start_pos": "1501", "end_pos": "1501" }, { "start_pos": "1514", "end_pos": "1514" }, { "start_pos": "1517", "end_pos": "1517" }, { "start_pos": "1542", "end_pos": "1542" }, { "start_pos": "1547", "end_pos": "1547" }, { "start_pos": "1554", "end_pos": "1554" }, { "start_pos": "1574", "end_pos": "1574" }, { "start_pos": "1600", "end_pos": "1600" }, { "start_pos": "1603", "end_pos": "1603" }, { "start_pos": "1714", "end_pos": "1714" }, { "start_pos": "1726", "end_pos": "1726" }, { "start_pos": "1730", "end_pos": "1730" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1739", "end_pos": "1739" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "389", "end_pos": "389" }, { "start_pos": "391", "end_pos": "391" }, { "start_pos": "392", "end_pos": "392" }, { "start_pos": "419", "end_pos": "419" }, { "start_pos": "424", "end_pos": "424" }, { "start_pos": "625", "end_pos": "625" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q29RW1-1.64.64", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q29RW1-1.69.69", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q99PS8-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "Q99PS8-1", "length": 525, "uniprot_id": "HRG_RAT", "protein_name": "Histidine-rich glycoprotein", "refseq_ac": "NP_001316829", "refseq_name": "histidine-rich glycoprotein like 1 precursor", "gene_name": "Hrgl1; Hrg", "gene_names_uniprotkb": "Hrgl1; Hrg; Hrg l1; Hrg1; Hrgl1; LOC681544", "gene_names_refseq": "Hrgl1; Hrg; RNHRG2; Usp17l8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AMRTSEVVIGQCKVIATRYS", "down_seq": "ESQDLSVNGYNCTMRSVSSA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn112", "evidence": [ { "id": "Q99PS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q99PS8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "330", "end_pos": "330" } ] }, { "type": "snv", "site_list": [ { "start_pos": "202", "end_pos": "202" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "438", "end_pos": "438" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q99PS8-1.123.123", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q99PS8-1.123.123", "start_pos": 123, "end_pos": 123, "uniprot_canonical_ac": "Q99PS8-1", "length": 525, "uniprot_id": "HRG_RAT", "protein_name": "Histidine-rich glycoprotein", "refseq_ac": "NP_001316829", "refseq_name": "histidine-rich glycoprotein like 1 precursor", "gene_name": "Hrgl1; Hrg", "gene_names_uniprotkb": "Hrgl1; Hrg; Hrg l1; Hrg1; Hrgl1; LOC681544", "gene_names_refseq": "Hrgl1; Hrg; RNHRG2; Usp17l8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "CKVIATRYSNESQDLSVNGY", "down_seq": "CTMRSVSSAYINTKDSPVLV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn123", "evidence": [ { "id": "Q99PS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q99PS8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "330", "end_pos": "330" } ] }, { "type": "snv", "site_list": [ { "start_pos": "202", "end_pos": "202" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "438", "end_pos": "438" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q99PS8-1.112.112", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q99PS8-1.200.200", "start_pos": 200, "end_pos": 200, "uniprot_canonical_ac": "Q99PS8-1", "length": 525, "uniprot_id": "HRG_RAT", "protein_name": "Histidine-rich glycoprotein", "refseq_ac": "NP_001316829", "refseq_name": "histidine-rich glycoprotein like 1 precursor", "gene_name": "Hrgl1; Hrg", "gene_names_uniprotkb": "Hrgl1; Hrg; Hrg l1; Hrg1; Hrgl1; LOC681544", "gene_names_refseq": "Hrgl1; Hrg; RNHRG2; Usp17l8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RVIRMRGGERTSYFIEFSVR", "down_seq": "CSTQHFPRHPPVFGLCRVVL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn200", "evidence": [ { "id": "Q99PS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q99PS8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "330", "end_pos": "330" } ] }, { "type": "snv", "site_list": [ { "start_pos": "202", "end_pos": "202" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "438", "end_pos": "438" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q99PS8-1.202.202", "categories": [ "snv_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q99PS8-1.322.322", "start_pos": 322, "end_pos": 322, "uniprot_canonical_ac": "Q99PS8-1", "length": 525, "uniprot_id": "HRG_RAT", "protein_name": "Histidine-rich glycoprotein", "refseq_ac": "NP_001316829", "refseq_name": "histidine-rich glycoprotein like 1 precursor", "gene_name": "Hrgl1; Hrg", "gene_names_uniprotkb": "Hrgl1; Hrg; Hrg l1; Hrg1; Hrgl1; LOC681544", "gene_names_refseq": "Hrgl1; Hrg; RNHRG2; Usp17l8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PLQEGALPQMLPGHSGPSGT", "down_seq": "RSHRPPHNHSCNEHPCHGQH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn322", "evidence": [ { "id": "Q99PS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q99PS8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "330", "end_pos": "330" } ] }, { "type": "snv", "site_list": [ { "start_pos": "202", "end_pos": "202" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "438", "end_pos": "438" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q99PS8-1.330.330", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q99PS8-1.330.330", "start_pos": 330, "end_pos": 330, "uniprot_canonical_ac": "Q99PS8-1", "length": 525, "uniprot_id": "HRG_RAT", "protein_name": "Histidine-rich glycoprotein", "refseq_ac": "NP_001316829", "refseq_name": "histidine-rich glycoprotein like 1 precursor", "gene_name": "Hrgl1; Hrg", "gene_names_uniprotkb": "Hrgl1; Hrg; Hrg l1; Hrg1; Hrgl1; LOC681544", "gene_names_refseq": "Hrgl1; Hrg; RNHRG2; Usp17l8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QMLPGHSGPSGTNRSHRPPH", "down_seq": "HSCNEHPCHGQHPHGHHPHG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn330", "evidence": [ { "id": "Q99PS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q99PS8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "330", "end_pos": "330" } ] }, { "type": "snv", "site_list": [ { "start_pos": "202", "end_pos": "202" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "438", "end_pos": "438" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q99PS8-1.322.322", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q99PS8-1.202.202", "start_pos": 202, "end_pos": 202, "uniprot_canonical_ac": "Q99PS8-1", "length": 525, "uniprot_id": "HRG_RAT", "protein_name": "Histidine-rich glycoprotein", "refseq_ac": "NP_001316829", "refseq_name": "histidine-rich glycoprotein like 1 precursor", "gene_name": "Hrgl1; Hrg", "gene_names_uniprotkb": "Hrgl1; Hrg; Hrg l1; Hrg1; Hrgl1; LOC681544", "gene_names_refseq": "Hrgl1; Hrg; RNHRG2; Usp17l8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "rs3322183066", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs3322183066", "database": "dbSNP", "categories": [ "Other" ] }, { "id": "rs3322115921", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs3322115921", "database": "dbSNP", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IRMRGGERTSYFIEFSVRNC", "down_seq": "TQHFPRHPPVFGLCRVVLTY", "snv": [ { "evidence": [ { "id": "rs3322183066", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs3322183066" } ], "glycoeffect": [ "n-glyco-sequon-loss", "o-glyco-site-loss" ], "sequence_org": "S", "sequence_mut": "N", "comment": "Germline mutation passed 1 filters: n-glyco-sequon-loss (NCS->NCN).", "chr_id": "11", "chr_pos": "91562956", "ref_nt": "T", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "S202", "keywords": [ "ebi", "germline" ] }, { "evidence": [ { "id": "rs3322115921", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs3322115921" } ], "glycoeffect": [ "n-glyco-sequon-loss", "o-glyco-site-loss" ], "sequence_org": "S", "sequence_mut": "R", "comment": "Germline mutation passed 1 filters: n-glyco-sequon-loss (NCS->NCR).", "chr_id": "11", "chr_pos": "91562955", "ref_nt": "C", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "S202", "keywords": [ "ebi", "germline" ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "330", "end_pos": "330" } ] }, { "type": "snv", "site_list": [ { "start_pos": "202", "end_pos": "202" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "438", "end_pos": "438" } ] } ], "categories": [ "snv_flag" ], "glycosylation": [], "mutagenesis": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q99PS8-1.200.200", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": true, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "sequence_org", "sequence_mut", "comment", "chr_id", "chr_pos", "ref_nt", "alt_nt", "minor_allelic_frequency", "site_lbl" ] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "sequence_org", "sequence_mut", "comment", "chr_id", "chr_pos", "ref_nt", "alt_nt", "minor_allelic_frequency", "site_lbl" ] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q99PS8-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "Q99PS8-1", "length": 525, "uniprot_id": "HRG_RAT", "protein_name": "Histidine-rich glycoprotein", "refseq_ac": "NP_001316829", "refseq_name": "histidine-rich glycoprotein like 1 precursor", "gene_name": "Hrgl1; Hrg", "gene_names_uniprotkb": "Hrgl1; Hrg; Hrg l1; Hrg1; Hrgl1; LOC681544", "gene_names_refseq": "Hrgl1; Hrg; RNHRG2; Usp17l8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8" }, { "database": "iPTMnet", "id": "Q99PS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99PS8" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q99PS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99PS8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TMRSVSSAYINTKDSPVLVD", "down_seq": "FEDSEPYRKLARKALDKYKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q99PS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99PS8" } ], "site_lbl": "Ser145" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "330", "end_pos": "330" } ] }, { "type": "snv", "site_list": [ { "start_pos": "202", "end_pos": "202" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "438", "end_pos": "438" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q99PS8-1.438.438", "start_pos": 438, "end_pos": 438, "uniprot_canonical_ac": "Q99PS8-1", "length": 525, "uniprot_id": "HRG_RAT", "protein_name": "Histidine-rich glycoprotein", "refseq_ac": "NP_001316829", "refseq_name": "histidine-rich glycoprotein like 1 precursor", "gene_name": "Hrgl1; Hrg", "gene_names_uniprotkb": "Hrgl1; Hrg; Hrg l1; Hrg1; Hrgl1; LOC681544", "gene_names_refseq": "Hrgl1; Hrg; RNHRG2; Usp17l8", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8" }, { "database": "iPTMnet", "id": "Q99PS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99PS8" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q99PS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99PS8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SNSQELKGQYHRGHGPPHGH", "down_seq": "RKRGPGKGLFPFHQRQIGYV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q99PS8", "url": "https://www.uniprot.org/uniprotkb/Q99PS8" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q99PS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99PS8" } ], "site_lbl": "Ser438" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "123", "end_pos": "123" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "322", "end_pos": "322" }, { "start_pos": "330", "end_pos": "330" } ] }, { "type": "snv", "site_list": [ { "start_pos": "202", "end_pos": "202" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" }, { "start_pos": "438", "end_pos": "438" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z2J4-1.221.221", "start_pos": 221, "end_pos": 221, "uniprot_canonical_ac": "Q9Z2J4-1", "length": 656, "uniprot_id": "NEXN_RAT", "protein_name": "Nexilin", "refseq_ac": "NP_631976", "refseq_name": "nexilin isoform b", "gene_name": "Nexn", "gene_names_uniprotkb": "Nexn", "gene_names_refseq": "Nexn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKEAKCLSLVMDDETEAKKE", "down_seq": "RFPGKLKSTFEELERQRQEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" } ], "site_lbl": "Ser221" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z2J4-1.330.330", "start_pos": 330, "end_pos": 330, "uniprot_canonical_ac": "Q9Z2J4-1", "length": 656, "uniprot_id": "NEXN_RAT", "protein_name": "Nexilin", "refseq_ac": "NP_631976", "refseq_name": "nexilin isoform b", "gene_name": "Nexn", "gene_names_uniprotkb": "Nexn", "gene_names_refseq": "Nexn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EEEARRRMEEEKKAFAEARR", "down_seq": "MVLDDDSPEIYKAVSQESLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "site_lbl": "Ser330" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q9Z2J4-1.337.337", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9Z2J4-1.345.345", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q9Z2J4-1.350.350", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z2J4-1.337.337", "start_pos": 337, "end_pos": 337, "uniprot_canonical_ac": "Q9Z2J4-1", "length": 656, "uniprot_id": "NEXN_RAT", "protein_name": "Nexilin", "refseq_ac": "NP_631976", "refseq_name": "nexilin isoform b", "gene_name": "Nexn", "gene_names_uniprotkb": "Nexn", "gene_names_refseq": "Nexn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MEEEKKAFAEARRSMVLDDD", "down_seq": "PEIYKAVSQESLTPGKLEIN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "site_lbl": "Ser337" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9Z2J4-1.330.330", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9Z2J4-1.345.345", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9Z2J4-1.350.350", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z2J4-1.345.345", "start_pos": 345, "end_pos": 345, "uniprot_canonical_ac": "Q9Z2J4-1", "length": 656, "uniprot_id": "NEXN_RAT", "protein_name": "Nexilin", "refseq_ac": "NP_631976", "refseq_name": "nexilin isoform b", "gene_name": "Nexn", "gene_names_uniprotkb": "Nexn", "gene_names_refseq": "Nexn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AEARRSMVLDDDSPEIYKAV", "down_seq": "QESLTPGKLEINFEQLLRQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "site_lbl": "Ser345" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9Z2J4-1.330.330", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9Z2J4-1.337.337", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9Z2J4-1.350.350", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z2J4-1.350.350", "start_pos": 350, "end_pos": 350, "uniprot_canonical_ac": "Q9Z2J4-1", "length": 656, "uniprot_id": "NEXN_RAT", "protein_name": "Nexilin", "refseq_ac": "NP_631976", "refseq_name": "nexilin isoform b", "gene_name": "Nexn", "gene_names_uniprotkb": "Nexn", "gene_names_refseq": "Nexn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SMVLDDDSPEIYKAVSQESL", "down_seq": "PGKLEINFEQLLRQKMEEER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" } ], "site_lbl": "Thr350" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q9Z2J4-1.330.330", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9Z2J4-1.337.337", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9Z2J4-1.345.345", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9Z2J4-1.544.544", "start_pos": 544, "end_pos": 544, "uniprot_canonical_ac": "Q9Z2J4-1", "length": 656, "uniprot_id": "NEXN_RAT", "protein_name": "Nexilin", "refseq_ac": "NP_631976", "refseq_name": "nexilin isoform b", "gene_name": "Nexn", "gene_names_uniprotkb": "Nexn", "gene_names_refseq": "Nexn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QKEIDAALQKKREDDEEEEG", "down_seq": "IVNGSTTEDEEQTRSGAPWF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "site_lbl": "Ser544" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q9Z2J4-1.549.549", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9Z2J4-1.551.551", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z2J4-1.549.549", "start_pos": 549, "end_pos": 549, "uniprot_canonical_ac": "Q9Z2J4-1", "length": 656, "uniprot_id": "NEXN_RAT", "protein_name": "Nexilin", "refseq_ac": "NP_631976", "refseq_name": "nexilin isoform b", "gene_name": "Nexn", "gene_names_uniprotkb": "Nexn", "gene_names_refseq": "Nexn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AALQKKREDDEEEEGSIVNG", "down_seq": "TTEDEEQTRSGAPWFKKPLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "site_lbl": "Ser549" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9Z2J4-1.544.544", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9Z2J4-1.551.551", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z2J4-1.551.551", "start_pos": 551, "end_pos": 551, "uniprot_canonical_ac": "Q9Z2J4-1", "length": 656, "uniprot_id": "NEXN_RAT", "protein_name": "Nexilin", "refseq_ac": "NP_631976", "refseq_name": "nexilin isoform b", "gene_name": "Nexn", "gene_names_uniprotkb": "Nexn", "gene_names_refseq": "Nexn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LQKKREDDEEEEGSIVNGST", "down_seq": "EDEEQTRSGAPWFKKPLRNT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "site_lbl": "Thr551" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9Z2J4-1.544.544", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9Z2J4-1.549.549", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9Z2J4-1.80.80", "start_pos": 80, "end_pos": 80, "uniprot_canonical_ac": "Q9Z2J4-1", "length": 656, "uniprot_id": "NEXN_RAT", "protein_name": "Nexilin", "refseq_ac": "NP_631976", "refseq_name": "nexilin isoform b", "gene_name": "Nexn", "gene_names_uniprotkb": "Nexn", "gene_names_refseq": "Nexn", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QYIREREWNRRKQEIKDMLA", "down_seq": "DEEEEPSKVEKAYVPKLTGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9Z2J4", "url": "https://www.uniprot.org/uniprotkb/Q9Z2J4" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9Z2J4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Z2J4" } ], "site_lbl": "Ser80" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "345", "end_pos": "345" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "549", "end_pos": "549" }, { "start_pos": "551", "end_pos": "551" }, { "start_pos": "80", "end_pos": "80" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35826-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "O35826-1", "length": 722, "uniprot_id": "GLCNE_RAT", "protein_name": "Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "refseq_ac": "NP_446217", "refseq_name": "bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "gene_name": "Gne", "gene_names_uniprotkb": "Gne; Glcne", "gene_names_refseq": "Gne; Uae1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Aberrant O-GlcNAcylation disrupts GNE enzyme activity in GNE myopathy.", "journal": "The FEBS journal", "date": "2016", "authors": "Bennmann D, Weidemann W, Thate A, Kreuzmann D, Horstkorte R", "evidence": [ { "database": "O-GlcNAc Database", "id": "O35826", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O35826" } ], "reference": [ { "type": "PubMed", "id": "27037841", "url": "https://glygen.org/publication/PubMed/27037841" } ] } ], "crossref": [ { "id": "27037841", "url": "https://glygen.org/publication/PubMed/27037841", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35826", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O35826", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "27037841", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27037841" }, { "id": "O35826", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O35826" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35826-1.110.110", "start_pos": 110, "end_pos": 110, "uniprot_canonical_ac": "O35826-1", "length": 722, "uniprot_id": "GLCNE_RAT", "protein_name": "Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "refseq_ac": "NP_446217", "refseq_name": "bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "gene_name": "Gne", "gene_names_uniprotkb": "Gne; Glcne", "gene_names_refseq": "Gne; Uae1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Selective loss of either the epimerase or kinase activity of UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase due to site-directed mutagenesis based on sequence alignments.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Effertz K, Hinderlich S, Reutter W", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "reference": [ { "type": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "crossref": [ { "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "LALVKLPDVLNRLKPDIMIV", "down_seq": "GDRFDALALATSAALMNIRI", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Loss UDP-N-acetylglucosamine 2-epimerase activity. No effect on N-acylmannosamine kinase activity. Partial reduction of the dimerization process.", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" }, { "database": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35826-1.132.132", "start_pos": 132, "end_pos": 132, "uniprot_canonical_ac": "O35826-1", "length": 722, "uniprot_id": "GLCNE_RAT", "protein_name": "Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "refseq_ac": "NP_446217", "refseq_name": "bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "gene_name": "Gne", "gene_names_uniprotkb": "Gne; Glcne", "gene_names_refseq": "Gne; Uae1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Selective loss of either the epimerase or kinase activity of UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase due to site-directed mutagenesis based on sequence alignments.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Effertz K, Hinderlich S, Reutter W", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "reference": [ { "type": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "crossref": [ { "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "DRFDALALATSAALMNIRIL", "down_seq": "IEGGEVSGTIDDSIRHAITK", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Loss UDP-N-acetylglucosamine 2-epimerase activity. No effect on N-acylmannosamine kinase activity. Partial reduction of the dimerization process.", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" }, { "database": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35826-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "O35826-1", "length": 722, "uniprot_id": "GLCNE_RAT", "protein_name": "Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "refseq_ac": "NP_446217", "refseq_name": "bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "gene_name": "Gne", "gene_names_uniprotkb": "Gne; Glcne", "gene_names_refseq": "Gne; Uae1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Selective loss of either the epimerase or kinase activity of UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase due to site-directed mutagenesis based on sequence alignments.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Effertz K, Hinderlich S, Reutter W", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "reference": [ { "type": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "crossref": [ { "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "GGEVSGTIDDSIRHAITKLA", "down_seq": "YHVCCTRSAEQHLISMCEDH", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Loss UDP-N-acetylglucosamine 2-epimerase activity. No effect on N-acylmannosamine kinase activity. Strong reduction of the dimerization process.", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" }, { "database": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O35826-1.157.157", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35826-1.157.157", "start_pos": 157, "end_pos": 157, "uniprot_canonical_ac": "O35826-1", "length": 722, "uniprot_id": "GLCNE_RAT", "protein_name": "Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "refseq_ac": "NP_446217", "refseq_name": "bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "gene_name": "Gne", "gene_names_uniprotkb": "Gne; Glcne", "gene_names_refseq": "Gne; Uae1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Selective loss of either the epimerase or kinase activity of UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase due to site-directed mutagenesis based on sequence alignments.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Effertz K, Hinderlich S, Reutter W", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "reference": [ { "type": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "crossref": [ { "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "EVSGTIDDSIRHAITKLAHY", "down_seq": "VCCTRSAEQHLISMCEDHDR", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Loss UDP-N-acetylglucosamine 2-epimerase activity. No effect on N-acylmannosamine kinase activity. Strong reduction of the dimerization process.", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" }, { "database": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O35826-1.155.155", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35826-1.413.413", "start_pos": 413, "end_pos": 413, "uniprot_canonical_ac": "O35826-1", "length": 722, "uniprot_id": "GLCNE_RAT", "protein_name": "Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "refseq_ac": "NP_446217", "refseq_name": "bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "gene_name": "Gne", "gene_names_uniprotkb": "Gne; Glcne", "gene_names_refseq": "Gne; Uae1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Selective loss of either the epimerase or kinase activity of UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase due to site-directed mutagenesis based on sequence alignments.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Effertz K, Hinderlich S, Reutter W", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "reference": [ { "type": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "crossref": [ { "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "KENISQDIDHILETLSALAV", "down_seq": "LGGTNLRVAIVSMKGEIVKK", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "K", "comment": "No effect on UDP-N-acetylglucosamine 2-epimerase activity. Does not affect feedback inhibition by CMP-Neu5Ac. Loss of N-acylmannosamine kinase activity. Does not interfere with oligomerization.", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" }, { "database": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] }, { "sequence_org": "D", "sequence_mut": "N", "comment": "No effect on UDP-N-acetylglucosamine 2-epimerase activity. Does not affect feedback inhibition by CMP-Neu5Ac. Loss of N-acylmannosamine kinase activity. Does not interfere with oligomerization.", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" }, { "database": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O35826-1.420.420", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35826-1.420.420", "start_pos": 420, "end_pos": 420, "uniprot_canonical_ac": "O35826-1", "length": 722, "uniprot_id": "GLCNE_RAT", "protein_name": "Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "refseq_ac": "NP_446217", "refseq_name": "bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "gene_name": "Gne", "gene_names_uniprotkb": "Gne; Glcne", "gene_names_refseq": "Gne; Uae1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Selective loss of either the epimerase or kinase activity of UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase due to site-directed mutagenesis based on sequence alignments.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Effertz K, Hinderlich S, Reutter W", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "reference": [ { "type": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "crossref": [ { "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "IDHILETLSALAVDLGGTNL", "down_seq": "VAIVSMKGEIVKKYTQFNPK", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "M", "comment": "No effect on UDP-N-acetylglucosamine 2-epimerase activity. Does not affect feedback inhibition by CMP-Neu5Ac. Loss of N-acylmannosamine kinase activity. Does not interfere with oligomerization.", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" }, { "database": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O35826-1.413.413", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35826-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "O35826-1", "length": 722, "uniprot_id": "GLCNE_RAT", "protein_name": "Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "refseq_ac": "NP_446217", "refseq_name": "bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase", "gene_name": "Gne", "gene_names_uniprotkb": "Gne; Glcne", "gene_names_refseq": "Gne; Uae1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Selective loss of either the epimerase or kinase activity of UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase due to site-directed mutagenesis based on sequence alignments.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Effertz K, Hinderlich S, Reutter W", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" } ], "reference": [ { "type": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "crossref": [ { "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "MFGIKTEPAFFELDVVVLGS", "down_seq": "LIDDYGNTYRMIEQDDFDIN", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Loss UDP-N-acetylglucosamine 2-epimerase activity. No effect on N-acylmannosamine kinase activity. Does not interfere with enzyme oligomerization.", "evidence": [ { "database": "UniProtKB", "id": "O35826", "url": "https://www.uniprot.org/uniprotkb/O35826" }, { "database": "PubMed", "id": "10497249", "url": "https://glygen.org/publication/PubMed/10497249" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "132", "end_pos": "132" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "413", "end_pos": "413" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P11915-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "P11915-1", "length": 547, "uniprot_id": "SCP2_RAT", "protein_name": "Sterol carrier protein 2", "refseq_ac": "NP_612517", "refseq_name": "sterol carrier protein 2", "gene_name": "Podn; Scp2", "gene_names_uniprotkb": "Podn; Scp2; Podn; Scp-2", "gene_names_refseq": "NSLIPTR; SCPx; Scp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915" }, { "database": "iPTMnet", "id": "P11915", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P11915" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P11915", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P11915", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MP", "down_seq": "VALNSPRLPRVFVVGVGMTK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P11915", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P11915" } ], "site_lbl": "Ser3" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "3", "end_pos": "3" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "P11915-1.8.8", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P11915-1.516.516", "start_pos": 516, "end_pos": 516, "uniprot_canonical_ac": "P11915-1", "length": 547, "uniprot_id": "SCP2_RAT", "protein_name": "Sterol carrier protein 2", "refseq_ac": "NP_612517", "refseq_name": "sterol carrier protein 2", "gene_name": "Podn; Scp2", "gene_names_uniprotkb": "Podn; Scp2; Podn; Scp-2", "gene_names_refseq": "NSLIPTR; SCPx; Scp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TITMADSDLLALMTGKMNPQ", "down_seq": "AFFQGKLKIAGNMGLAMKLQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915" } ], "site_lbl": "Ser516" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "3", "end_pos": "3" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P11915-1.537.537", "start_pos": 537, "end_pos": 537, "uniprot_canonical_ac": "P11915-1", "length": 547, "uniprot_id": "SCP2_RAT", "protein_name": "Sterol carrier protein 2", "refseq_ac": "NP_612517", "refseq_name": "sterol carrier protein 2", "gene_name": "Podn; Scp2", "gene_names_uniprotkb": "Podn; Scp2; Podn; Scp-2", "gene_names_refseq": "NSLIPTR; SCPx; Scp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915" }, { "database": "iPTMnet", "id": "P11915", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P11915" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P11915", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P11915", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AFFQGKLKIAGNMGLAMKLQ", "down_seq": "LQLQPDKAKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P11915", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P11915" } ], "site_lbl": "Ser537" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "3", "end_pos": "3" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P11915-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "P11915-1", "length": 547, "uniprot_id": "SCP2_RAT", "protein_name": "Sterol carrier protein 2", "refseq_ac": "NP_612517", "refseq_name": "sterol carrier protein 2", "gene_name": "Podn; Scp2", "gene_names_uniprotkb": "Podn; Scp2; Podn; Scp-2", "gene_names_refseq": "NSLIPTR; SCPx; Scp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915" }, { "database": "iPTMnet", "id": "P11915", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P11915" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P11915", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P11915", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MPSVALN", "down_seq": "PRLPRVFVVGVGMTKFMKPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P11915", "url": "https://www.uniprot.org/uniprotkb/P11915" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P11915", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P11915" } ], "site_lbl": "Ser8" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "3", "end_pos": "3" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P11915-1.3.3", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "A4GTP4-1.380.380", "start_pos": 380, "end_pos": 380, "uniprot_canonical_ac": "A4GTP4-1", "length": 427, "uniprot_id": "ELK1_RAT", "protein_name": "ETS domain-containing protein Elk-1", "refseq_ac": "NP_001101529", "refseq_name": "ETS domain-containing protein Elk-1", "gene_name": "Elk1", "gene_names_uniprotkb": "Elk1", "gene_names_refseq": "Elk1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TLTPVLLTPSSLPPSIHFWS", "down_seq": "LSPIAPRSPAKLSFQFPSSG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr380", "evidence": [ { "id": "A4GTP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A4GTP4#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "380", "end_pos": "380" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "382", "end_pos": "382" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "A4GTP4-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "A4GTP4-1.367.367", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "A4GTP4-1.382.382", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "A4GTP4-1.388.388", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "A4GTP4-1.323.323", "start_pos": 323, "end_pos": 323, "uniprot_canonical_ac": "A4GTP4-1", "length": 427, "uniprot_id": "ELK1_RAT", "protein_name": "ETS domain-containing protein Elk-1", "refseq_ac": "NP_001101529", "refseq_name": "ETS domain-containing protein Elk-1", "gene_name": "Elk1", "gene_names_uniprotkb": "Elk1", "gene_names_refseq": "Elk1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TTEITQPQKGRKPRDLELPL", "down_seq": "PSLLGGQGPERTPGSGTSSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MAPK1", "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "site_lbl": "Ser323" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "380", "end_pos": "380" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "382", "end_pos": "382" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "A4GTP4-1.335.335", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "A4GTP4-1.335.335", "start_pos": 335, "end_pos": 335, "uniprot_canonical_ac": "A4GTP4-1", "length": 427, "uniprot_id": "ELK1_RAT", "protein_name": "ETS domain-containing protein Elk-1", "refseq_ac": "NP_001101529", "refseq_name": "ETS domain-containing protein Elk-1", "gene_name": "Elk1", "gene_names_uniprotkb": "Elk1", "gene_names_refseq": "Elk1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PRDLELPLSPSLLGGQGPER", "down_seq": "PGSGTSSGLQAQGPALTPSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by MAPK1", "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "site_lbl": "Thr335" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "380", "end_pos": "380" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "382", "end_pos": "382" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "A4GTP4-1.323.323", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "A4GTP4-1.352.352", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "A4GTP4-1.352.352", "start_pos": 352, "end_pos": 352, "uniprot_canonical_ac": "A4GTP4-1", "length": 427, "uniprot_id": "ELK1_RAT", "protein_name": "ETS domain-containing protein Elk-1", "refseq_ac": "NP_001101529", "refseq_name": "ETS domain-containing protein Elk-1", "gene_name": "Elk1", "gene_names_uniprotkb": "Elk1", "gene_names_refseq": "Elk1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PERTPGSGTSSGLQAQGPAL", "down_seq": "PSLLPTHTLTPVLLTPSSLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by MAPK1", "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "site_lbl": "Thr352" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "380", "end_pos": "380" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "382", "end_pos": "382" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "A4GTP4-1.335.335", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "A4GTP4-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "A4GTP4-1.367.367", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "A4GTP4-1.362.362", "start_pos": 362, "end_pos": 362, "uniprot_canonical_ac": "A4GTP4-1", "length": 427, "uniprot_id": "ELK1_RAT", "protein_name": "ETS domain-containing protein Elk-1", "refseq_ac": "NP_001101529", "refseq_name": "ETS domain-containing protein Elk-1", "gene_name": "Elk1", "gene_names_uniprotkb": "Elk1", "gene_names_refseq": "Elk1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SGLQAQGPALTPSLLPTHTL", "down_seq": "PVLLTPSSLPPSIHFWSTLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by MAPK1", "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "site_lbl": "Thr362" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "380", "end_pos": "380" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "382", "end_pos": "382" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "A4GTP4-1.352.352", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "A4GTP4-1.367.367", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "A4GTP4-1.380.380", "categories": [ "glycosylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "A4GTP4-1.382.382", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "A4GTP4-1.367.367", "start_pos": 367, "end_pos": 367, "uniprot_canonical_ac": "A4GTP4-1", "length": 427, "uniprot_id": "ELK1_RAT", "protein_name": "ETS domain-containing protein Elk-1", "refseq_ac": "NP_001101529", "refseq_name": "ETS domain-containing protein Elk-1", "gene_name": "Elk1", "gene_names_uniprotkb": "Elk1", "gene_names_refseq": "Elk1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QGPALTPSLLPTHTLTPVLL", "down_seq": "PSSLPPSIHFWSTLSPIAPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by MAPK1", "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "site_lbl": "Thr367" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "380", "end_pos": "380" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "382", "end_pos": "382" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "A4GTP4-1.352.352", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "A4GTP4-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "A4GTP4-1.380.380", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "A4GTP4-1.382.382", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "A4GTP4-1.382.382", "start_pos": 382, "end_pos": 382, "uniprot_canonical_ac": "A4GTP4-1", "length": 427, "uniprot_id": "ELK1_RAT", "protein_name": "ETS domain-containing protein Elk-1", "refseq_ac": "NP_001101529", "refseq_name": "ETS domain-containing protein Elk-1", "gene_name": "Elk1", "gene_names_uniprotkb": "Elk1", "gene_names_refseq": "Elk1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPVLLTPSSLPPSIHFWSTL", "down_seq": "PIAPRSPAKLSFQFPSSGSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MAPK1 and MAPK8", "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "site_lbl": "Ser382" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "380", "end_pos": "380" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "382", "end_pos": "382" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "A4GTP4-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "A4GTP4-1.367.367", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "A4GTP4-1.380.380", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "A4GTP4-1.388.388", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "A4GTP4-1.388.388", "start_pos": 388, "end_pos": 388, "uniprot_canonical_ac": "A4GTP4-1", "length": 427, "uniprot_id": "ELK1_RAT", "protein_name": "ETS domain-containing protein Elk-1", "refseq_ac": "NP_001101529", "refseq_name": "ETS domain-containing protein Elk-1", "gene_name": "Elk1", "gene_names_uniprotkb": "Elk1", "gene_names_refseq": "Elk1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSSLPPSIHFWSTLSPIAPR", "down_seq": "PAKLSFQFPSSGSAQVHIPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MAPK1", "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "site_lbl": "Ser388" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "380", "end_pos": "380" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "382", "end_pos": "382" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "A4GTP4-1.380.380", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "A4GTP4-1.382.382", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "A4GTP4-1.416.416", "start_pos": 416, "end_pos": 416, "uniprot_canonical_ac": "A4GTP4-1", "length": 427, "uniprot_id": "ELK1_RAT", "protein_name": "ETS domain-containing protein Elk-1", "refseq_ac": "NP_001101529", "refseq_name": "ETS domain-containing protein Elk-1", "gene_name": "Elk1", "gene_names_uniprotkb": "Elk1", "gene_names_refseq": "Elk1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FPSSGSAQVHIPSISVDGLS", "down_seq": "PVVLSPGPQKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by MAPK1", "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "site_lbl": "Thr416" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "380", "end_pos": "380" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "382", "end_pos": "382" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "A4GTP4-1.421.421", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "A4GTP4-1.421.421", "start_pos": 421, "end_pos": 421, "uniprot_canonical_ac": "A4GTP4-1", "length": 427, "uniprot_id": "ELK1_RAT", "protein_name": "ETS domain-containing protein Elk-1", "refseq_ac": "NP_001101529", "refseq_name": "ETS domain-containing protein Elk-1", "gene_name": "Elk1", "gene_names_uniprotkb": "Elk1", "gene_names_refseq": "Elk1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SAQVHIPSISVDGLSTPVVL", "down_seq": "PGPQKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MAPK1", "evidence": [ { "database": "UniProtKB", "id": "A4GTP4", "url": "https://www.uniprot.org/uniprotkb/A4GTP4" } ], "site_lbl": "Ser421" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "380", "end_pos": "380" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "323", "end_pos": "323" }, { "start_pos": "335", "end_pos": "335" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "367", "end_pos": "367" }, { "start_pos": "382", "end_pos": "382" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "421", "end_pos": "421" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "A4GTP4-1.416.416", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GV22-1.159.159", "start_pos": 159, "end_pos": 159, "uniprot_canonical_ac": "B2GV22-1", "length": 471, "uniprot_id": "PTSS2_RAT", "protein_name": "Phosphatidylserine synthase 2", "refseq_ac": "NP_001099786", "refseq_name": "phosphatidylserine synthase 2", "gene_name": "Ptdss2", "gene_names_uniprotkb": "Ptdss2", "gene_names_refseq": "PSS-2; Ptdss2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LGVPLPERDYGGNCLIYDAD", "down_seq": "KTDPFHNIWDKLDGFVPAHF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn159", "evidence": [ { "id": "B2GV22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/B2GV22#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "159", "end_pos": "159" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "16", "end_pos": "16" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GV22-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "B2GV22-1", "length": 471, "uniprot_id": "PTSS2_RAT", "protein_name": "Phosphatidylserine synthase 2", "refseq_ac": "NP_001099786", "refseq_name": "phosphatidylserine synthase 2", "gene_name": "Ptdss2", "gene_names_uniprotkb": "Ptdss2", "gene_names_refseq": "PSS-2; Ptdss2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22" }, { "database": "iPTMnet", "id": "B2GV22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GV22" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2GV22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GV22", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MRRGERRVAGG", "down_seq": "GSESPLLEGRRSTESEVYDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2GV22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GV22" } ], "site_lbl": "Ser12" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "159", "end_pos": "159" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "16", "end_pos": "16" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "B2GV22-1.14.14", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "B2GV22-1.16.16", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "B2GV22-1.14.14", "start_pos": 14, "end_pos": 14, "uniprot_canonical_ac": "B2GV22-1", "length": 471, "uniprot_id": "PTSS2_RAT", "protein_name": "Phosphatidylserine synthase 2", "refseq_ac": "NP_001099786", "refseq_name": "phosphatidylserine synthase 2", "gene_name": "Ptdss2", "gene_names_uniprotkb": "Ptdss2", "gene_names_refseq": "PSS-2; Ptdss2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MRRGERRVAGGSG", "down_seq": "ESPLLEGRRSTESEVYDDGT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22" } ], "site_lbl": "Ser14" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "159", "end_pos": "159" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "16", "end_pos": "16" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "B2GV22-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "B2GV22-1.16.16", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "B2GV22-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "B2GV22-1", "length": 471, "uniprot_id": "PTSS2_RAT", "protein_name": "Phosphatidylserine synthase 2", "refseq_ac": "NP_001099786", "refseq_name": "phosphatidylserine synthase 2", "gene_name": "Ptdss2", "gene_names_uniprotkb": "Ptdss2", "gene_names_refseq": "PSS-2; Ptdss2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22" }, { "database": "iPTMnet", "id": "B2GV22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GV22" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "B2GV22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GV22", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MRRGERRVAGGSGSE", "down_seq": "PLLEGRRSTESEVYDDGTNT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "B2GV22", "url": "https://www.uniprot.org/uniprotkb/B2GV22" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "B2GV22", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B2GV22" } ], "site_lbl": "Ser16" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "159", "end_pos": "159" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "14", "end_pos": "14" }, { "start_pos": "16", "end_pos": "16" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "B2GV22-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "B2GV22-1.14.14", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZAA9-1.117.117", "start_pos": 117, "end_pos": 117, "uniprot_canonical_ac": "D3ZAA9-1", "length": 552, "uniprot_id": "MPP2_RAT", "protein_name": "MAGUK p55 subfamily member 2", "refseq_ac": "NP_445965", "refseq_name": "MAGUK p55 subfamily member 2", "gene_name": "Mpp2", "gene_names_uniprotkb": "Mpp2; rCG_34691", "gene_names_refseq": "Dlg2; Mpp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZAA9", "url": "https://www.uniprot.org/uniprotkb/D3ZAA9" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZAA9", "url": "https://www.uniprot.org/uniprotkb/D3ZAA9" }, { "database": "iPTMnet", "id": "D3ZAA9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZAA9" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZAA9", "url": "https://www.uniprot.org/uniprotkb/D3ZAA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZAA9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZAA9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EPHFQSLLETHDSVASKTYE", "down_seq": "PPPSPGLDPTFSNQPVPPDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "D3ZAA9", "url": "https://www.uniprot.org/uniprotkb/D3ZAA9" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZAA9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZAA9" } ], "site_lbl": "Thr117" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "42", "end_pos": "42" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "D3ZAA9-1.121.121", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZAA9-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "D3ZAA9-1", "length": 552, "uniprot_id": "MPP2_RAT", "protein_name": "MAGUK p55 subfamily member 2", "refseq_ac": "NP_445965", "refseq_name": "MAGUK p55 subfamily member 2", "gene_name": "Mpp2", "gene_names_uniprotkb": "Mpp2; rCG_34691", "gene_names_refseq": "Dlg2; Mpp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZAA9", "url": "https://www.uniprot.org/uniprotkb/D3ZAA9" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZAA9", "url": "https://www.uniprot.org/uniprotkb/D3ZAA9" }, { "database": "iPTMnet", "id": "D3ZAA9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZAA9" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZAA9", "url": "https://www.uniprot.org/uniprotkb/D3ZAA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZAA9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZAA9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QSLLETHDSVASKTYETPPP", "down_seq": "PGLDPTFSNQPVPPDAVRMV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZAA9", "url": "https://www.uniprot.org/uniprotkb/D3ZAA9" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZAA9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZAA9" } ], "site_lbl": "Ser121" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "42", "end_pos": "42" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "D3ZAA9-1.117.117", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "D3ZAA9-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "D3ZAA9-1", "length": 552, "uniprot_id": "MPP2_RAT", "protein_name": "MAGUK p55 subfamily member 2", "refseq_ac": "NP_445965", "refseq_name": "MAGUK p55 subfamily member 2", "gene_name": "Mpp2", "gene_names_uniprotkb": "Mpp2; rCG_34691", "gene_names_refseq": "Dlg2; Mpp2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D3ZAA9", "url": "https://www.uniprot.org/uniprotkb/D3ZAA9" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "D3ZAA9", "url": "https://www.uniprot.org/uniprotkb/D3ZAA9" }, { "database": "iPTMnet", "id": "D3ZAA9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZAA9" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "D3ZAA9", "url": "https://www.uniprot.org/uniprotkb/D3ZAA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "D3ZAA9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZAA9", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LPNATGAAELDLIFLRGIME", "down_seq": "PIVRSLAKAHERLEETKLEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "D3ZAA9", "url": "https://www.uniprot.org/uniprotkb/D3ZAA9" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "D3ZAA9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/D3ZAA9" } ], "site_lbl": "Ser42" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "117", "end_pos": "117" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "42", "end_pos": "42" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97685-1.1015.1015", "start_pos": 1015, "end_pos": 1015, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "N-Glycosylation in isolated rat nerve terminals.", "journal": "Molecular omics", "date": "2021", "authors": "Matthies I, Abrahams JL, Jensen P, Oliveira T, Kolarich D, Larsen MR", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals", "journal": "Molecular Omics", "date": "2021", "authors": "Matthies I., Abrahams J.L., Jensen P., Oliveira T., Kolarich D., Larsen M.R.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "DOI", "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" }, { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B", "database": "DOI", "categories": [ "Other" ] }, { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PTTTTGTKIHETAPDEQSIW", "down_seq": "VTVLPNSKWANITWKHNFRP", "glycosylation": [ { "glytoucan_ac": "G50073PQ", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1015", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "G88725PI", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1015", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1015", "evidence": [ { "id": "P97685", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "P97685-1.1026.1026", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 2 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 2 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97685-1.1026.1026", "start_pos": 1026, "end_pos": 1026, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TAPDEQSIWNVTVLPNSKWA", "down_seq": "ITWKHNFRPGTDFVVEYIDS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1026", "evidence": [ { "id": "P97685", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P97685-1.1015.1015", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.1047.1047", "start_pos": 1047, "end_pos": 1047, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ITWKHNFRPGTDFVVEYIDS", "down_seq": "HTKKTVPVKAQAQPIQLTDL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1047", "evidence": [ { "id": "P97685", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.1101.1101", "start_pos": 1101, "end_pos": 1101, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DNEGISSTVITFMTSTAYTN", "down_seq": "QTDIATQGWFIGLMCAIALL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1101", "evidence": [ { "id": "P97685", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SQMVLRGMDLLLECIASGVP", "down_seq": "PDIAWYKKGGDLPSDKAKFE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr275", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.305.305", "start_pos": 305, "end_pos": 305, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "N-Glycosylation in isolated rat nerve terminals.", "journal": "Molecular omics", "date": "2021", "authors": "Matthies I, Abrahams JL, Jensen P, Oliveira T, Kolarich D, Larsen MR", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals", "journal": "Molecular Omics", "date": "2021", "authors": "Matthies I., Abrahams J.L., Jensen P., Oliveira T., Kolarich D., Larsen M.R.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "DOI", "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] } ], "crossref": [ { "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B", "database": "DOI", "categories": [ "Other" ] }, { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GDLPSDKAKFENFNKALRIT", "down_seq": "VSEEDSGEYFCLASNKMGSI", "glycosylation": [ { "glytoucan_ac": "G02815KT", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn305", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn305", "evidence": [ { "id": "P97685", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97685-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AGDTIIFRDTQISSRAVYQC", "down_seq": "TSNEHGYLLANAFVSVLDVP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn409", "evidence": [ { "id": "P97685", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.446.446", "start_pos": 446, "end_pos": 446, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LDVPPRMLSPRNQLIRVILY", "down_seq": "RTRLDCPFFGSPIPTLRWFK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn446", "evidence": [ { "id": "P97685", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.483.483", "start_pos": 483, "end_pos": 483, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RWFKNGQGSNLDGGNYHVYE", "down_seq": "GSLEIKMIRKEDQGIYTCVA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn483", "evidence": [ { "id": "P97685", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P97685-1.481.481", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P97685-1.485.485", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.752.752", "start_pos": 752, "end_pos": 752, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" }, { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SDVKGEGTRKNNMEITWTPM", "down_seq": "ATSAFGPNLRYIVKWRRRET", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn752", "evidence": [ { "id": "P97685", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" }, { "id": "24090084", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24090084" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97685-1.778.778", "start_pos": 778, "end_pos": 778, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GPNLRYIVKWRRRETRETWN", "down_seq": "VTVWGSRYVVGQTPVYVPYE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn778", "evidence": [ { "id": "P97685", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.866.866", "start_pos": 866, "end_pos": 866, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "N-Glycosylation in isolated rat nerve terminals.", "journal": "Molecular omics", "date": "2021", "authors": "Matthies I, Abrahams JL, Jensen P, Oliveira T, Kolarich D, Larsen MR", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals", "journal": "Molecular Omics", "date": "2021", "authors": "Matthies I., Abrahams J.L., Jensen P., Oliveira T., Kolarich D., Larsen M.R.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "DOI", "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] } ], "crossref": [ { "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B", "database": "DOI", "categories": [ "Other" ] }, { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DHPEHPNGILIGYTLRYVPF", "down_seq": "GTKLGKQMVENFSPNQTKFS", "glycosylation": [ { "glytoucan_ac": "G02815KT", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn866", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn866", "evidence": [ { "id": "P97685", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "P97685-1.881.881", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97685-1.881.881", "start_pos": 881, "end_pos": 881, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "N-Glycosylation in isolated rat nerve terminals.", "journal": "Molecular omics", "date": "2021", "authors": "Matthies I, Abrahams JL, Jensen P, Oliveira T, Kolarich D, Larsen MR", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "PubMed", "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals", "journal": "Molecular Omics", "date": "2021", "authors": "Matthies I., Abrahams J.L., Jensen P., Oliveira T., Kolarich D., Larsen M.R.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "DOI", "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] } ], "crossref": [ { "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099", "database": "PubMed", "categories": [ "Other" ] }, { "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221", "database": "UniCarbKB", "categories": [] }, { "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B", "database": "DOI", "categories": [ "Other" ] }, { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RYVPFNGTKLGKQMVENFSP", "down_seq": "QTKFSVQRADPVSRYRFSLS", "glycosylation": [ { "glytoucan_ac": "G19379ID", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn881", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "G25987BV", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn881", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "G88725PI", "type": "N-linked;o-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn881", "evidence": [ { "id": "34106099", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34106099" }, { "id": "GLY_000221", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000221" }, { "id": "10.1039/D0MO00044B", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn881", "evidence": [ { "id": "P97685", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P97685#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P97685-1.866.866", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 3 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked;o_linked_glycans", "count": 3 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97685-1.918.918", "start_pos": 918, "end_pos": 918, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FSLSARTQVGSGEAATEESP", "down_seq": "PPNEATPTAAPPTLPPTTVG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr918", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P97685", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P97685" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97685", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P97685", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P97685", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P97685" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97685-1.1160.1160", "start_pos": 1160, "end_pos": 1160, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PVREKKDVPLGPEDPKEEDG", "down_seq": "FDYSDEDNKPLQGSQTSLDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "site_lbl": "Ser1160" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "P97685-1.1174.1174", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.1174.1174", "start_pos": 1174, "end_pos": 1174, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" }, { "database": "iPTMnet", "id": "P97685", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97685" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97685", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97685", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PKEEDGSFDYSDEDNKPLQG", "down_seq": "QTSLDGTIKQQESDDSLVDY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97685", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97685" } ], "site_lbl": "Ser1174" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P97685-1.1160.1160", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P97685-1.1187.1187", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "P97685-1.1190.1190", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97685-1.1187.1187", "start_pos": 1187, "end_pos": 1187, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" }, { "database": "iPTMnet", "id": "P97685", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97685" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97685", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97685", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DNKPLQGSQTSLDGTIKQQE", "down_seq": "DDSLVDYGEGGEGQFNEDGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97685", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97685" } ], "site_lbl": "Ser1187" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P97685-1.1174.1174", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P97685-1.1190.1190", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97685-1.1190.1190", "start_pos": 1190, "end_pos": 1190, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" }, { "database": "iPTMnet", "id": "P97685", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97685" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P97685", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97685", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLQGSQTSLDGTIKQQESDD", "down_seq": "LVDYGEGGEGQFNEDGSFIG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P97685", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P97685" } ], "site_lbl": "Ser1190" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "P97685-1.1174.1174", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P97685-1.1187.1187", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P97685-1.1226.1226", "start_pos": 1226, "end_pos": 1226, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSFIGQYTVRKDKEETEGNE", "down_seq": "SEATSPVNAIYSLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "site_lbl": "Ser1226" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P97685-1.1227.1227", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P97685-1.1231.1231", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.1227.1227", "start_pos": 1227, "end_pos": 1227, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SFIGQYTVRKDKEETEGNES", "down_seq": "EATSPVNAIYSLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "site_lbl": "Ser1227" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P97685-1.1226.1226", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P97685-1.1231.1231", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.1231.1231", "start_pos": 1231, "end_pos": 1231, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QYTVRKDKEETEGNESSEAT", "down_seq": "PVNAIYSLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "site_lbl": "Ser1231" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "P97685-1.1226.1226", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P97685-1.1227.1227", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.481.481", "start_pos": 481, "end_pos": 481, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TLRWFKNGQGSNLDGGNYHV", "down_seq": "ENGSLEIKMIRKEDQGIYTC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "site_lbl": "Tyr481" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P97685-1.483.483", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P97685-1.485.485", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P97685-1.485.485", "start_pos": 485, "end_pos": 485, "uniprot_canonical_ac": "P97685-1", "length": 1240, "uniprot_id": "NFASC_RAT", "protein_name": "Neurofascin", "refseq_ac": "NP_001153786", "refseq_name": "neurofascin isoform 1 precursor", "gene_name": "Nfasc", "gene_names_uniprotkb": "Nfasc", "gene_names_refseq": "NF; Nfasc", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FKNGQGSNLDGGNYHVYENG", "down_seq": "LEIKMIRKEDQGIYTCVATN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P97685", "url": "https://www.uniprot.org/uniprotkb/P97685" } ], "site_lbl": "Ser485" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1015", "end_pos": "1015" }, { "start_pos": "1026", "end_pos": "1026" }, { "start_pos": "1047", "end_pos": "1047" }, { "start_pos": "1101", "end_pos": "1101" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "446", "end_pos": "446" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "752", "end_pos": "752" }, { "start_pos": "778", "end_pos": "778" }, { "start_pos": "866", "end_pos": "866" }, { "start_pos": "881", "end_pos": "881" }, { "start_pos": "918", "end_pos": "918" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1160", "end_pos": "1160" }, { "start_pos": "1174", "end_pos": "1174" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "1190", "end_pos": "1190" }, { "start_pos": "1226", "end_pos": "1226" }, { "start_pos": "1227", "end_pos": "1227" }, { "start_pos": "1231", "end_pos": "1231" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "485", "end_pos": "485" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P97685-1.481.481", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P97685-1.483.483", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "D4AD53-1.435.435", "start_pos": 435, "end_pos": 435, "uniprot_canonical_ac": "D4AD53-1", "length": 514, "uniprot_id": "KCNG1_RAT", "protein_name": "Voltage-gated potassium channel regulatory subunit KCNG1", "refseq_ac": "NP_001100015", "refseq_name": "voltage-gated potassium channel regulatory subunit KCNG1 isoform 1", "gene_name": "Kcng1", "gene_names_uniprotkb": "Kcng1", "gene_names_refseq": "Kcng1; Kh2; Kv6.1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "D4AD53", "url": "https://www.uniprot.org/uniprotkb/D4AD53" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YWWAVITMTTVGYGDMVPRS", "down_seq": "PGQVVALSSILSGILLMAFP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr435", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "435", "end_pos": "435" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "F1LQ48-1.182.182", "start_pos": 182, "end_pos": 182, "uniprot_canonical_ac": "F1LQ48-1", "length": 623, "uniprot_id": "HNRPL_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "refseq_ac": "NP_001128232", "refseq_name": "heterogeneous nuclear ribonucleoprotein L isoform a", "gene_name": "Hnrnpl", "gene_names_uniprotkb": "Hnrnpl; Fblim1", "gene_names_refseq": "Hnrnpl; Hnrpl; hnrnp-L", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGHPAFVNYSTSQKISRPGD", "down_seq": "DDSRSVNSVLLFTILNPIYS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48" } ], "site_lbl": "Ser182" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "F1LQ48-1.288.288", "start_pos": 288, "end_pos": 288, "uniprot_canonical_ac": "F1LQ48-1", "length": 623, "uniprot_id": "HNRPL_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "refseq_ac": "NP_001128232", "refseq_name": "heterogeneous nuclear ribonucleoprotein L isoform a", "gene_name": "Hnrnpl", "gene_names_uniprotkb": "Hnrnpl; Fblim1", "gene_names_refseq": "Hnrnpl; Hnrpl; hnrnp-L", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRLNVFKNDQDTWDYTNPNL", "down_seq": "GQGDPGSNPNKRQRQPPLLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48" } ], "site_lbl": "Ser288" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "F1LQ48-1.295.295", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "F1LQ48-1.295.295", "start_pos": 295, "end_pos": 295, "uniprot_canonical_ac": "F1LQ48-1", "length": 623, "uniprot_id": "HNRPL_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "refseq_ac": "NP_001128232", "refseq_name": "heterogeneous nuclear ribonucleoprotein L isoform a", "gene_name": "Hnrnpl", "gene_names_uniprotkb": "Hnrnpl; Fblim1", "gene_names_refseq": "Hnrnpl; Hnrpl; hnrnp-L", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NDQDTWDYTNPNLSGQGDPG", "down_seq": "NPNKRQRQPPLLGDHPAEYG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48" } ], "site_lbl": "Ser295" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "F1LQ48-1.288.288", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "F1LQ48-1.415.415", "start_pos": 415, "end_pos": 415, "uniprot_canonical_ac": "F1LQ48-1", "length": 623, "uniprot_id": "HNRPL_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "refseq_ac": "NP_001128232", "refseq_name": "heterogeneous nuclear ribonucleoprotein L isoform a", "gene_name": "Hnrnpl", "gene_names_uniprotkb": "Hnrnpl; Fblim1", "gene_names_refseq": "Hnrnpl; Hnrpl; hnrnp-L", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PQYGHPPPPPPPPDYGPHAD", "down_seq": "PVLMVYGLDQSKMNCDRVFN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48" } ], "site_lbl": "Ser415" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "F1LQ48-1.578.578", "start_pos": 578, "end_pos": 578, "uniprot_canonical_ac": "F1LQ48-1", "length": 623, "uniprot_id": "HNRPL_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "refseq_ac": "NP_001128232", "refseq_name": "heterogeneous nuclear ribonucleoprotein L isoform a", "gene_name": "Hnrnpl", "gene_names_uniprotkb": "Hnrnpl; Fblim1", "gene_names_refseq": "Hnrnpl; Hnrpl; hnrnp-L", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGVKRPTSVKVFSGKSERSS", "down_seq": "GLLEWDSKSDALETLGFLNH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CaMK4", "evidence": [ { "database": "UniProtKB", "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48" } ], "site_lbl": "Ser578" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "F1LQ48-1.98.98", "start_pos": 98, "end_pos": 98, "uniprot_canonical_ac": "F1LQ48-1", "length": 623, "uniprot_id": "HNRPL_RAT", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "refseq_ac": "NP_001128232", "refseq_name": "heterogeneous nuclear ribonucleoprotein L isoform a", "gene_name": "Hnrnpl", "gene_names_uniprotkb": "Hnrnpl; Fblim1", "gene_names_refseq": "Hnrnpl; Hnrpl; hnrnp-L", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGAAGGGGGENYDDPHKTPA", "down_seq": "PVVHIRGLIDGVVEADLVEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "F1LQ48", "url": "https://www.uniprot.org/uniprotkb/F1LQ48" } ], "site_lbl": "Ser98" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "295", "end_pos": "295" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "578", "end_pos": "578" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P21807-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P21807-1", "length": 468, "uniprot_id": "PERI_RAT", "protein_name": "Peripherin", "refseq_ac": "", "refseq_name": "", "gene_name": "Prph", "gene_names_uniprotkb": "Prph; Prph1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P21807", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P21807" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P21807", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P21807", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P21807", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P21807" } ] } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "28", "end_pos": "28" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P21807-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "P21807-1", "length": 468, "uniprot_id": "PERI_RAT", "protein_name": "Peripherin", "refseq_ac": "", "refseq_name": "", "gene_name": "Prph", "gene_names_uniprotkb": "Prph; Prph1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807" }, { "database": "iPTMnet", "id": "P21807", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P21807" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P21807", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P21807", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRSSISSTSYRRTFGPPPSL", "down_seq": "PGAFSYSSSSRFSSSRLLGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P21807", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P21807" } ], "site_lbl": "Ser28" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "28", "end_pos": "28" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P21807-1.468.468", "start_pos": 468, "end_pos": 468, "uniprot_canonical_ac": "P21807-1", "length": 468, "uniprot_id": "PERI_RAT", "protein_name": "Peripherin", "refseq_ac": "", "refseq_name": "", "gene_name": "Prph", "gene_names_uniprotkb": "Prph; Prph1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Peripherin is tyrosine-phosphorylated at its carboxyl-terminal tyrosine.", "journal": "Journal of neurochemistry", "date": "1998", "authors": "Angelastro JM, Ho CL, Frappier T, Liem RK, Greene LA", "evidence": [ { "database": "UniProtKB", "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807" }, { "database": "iPTMnet", "id": "P21807", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P21807" } ], "reference": [ { "type": "PubMed", "id": "9453548", "url": "https://glygen.org/publication/PubMed/9453548" } ] } ], "crossref": [ { "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9453548", "url": "https://glygen.org/publication/PubMed/9453548", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P21807", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P21807", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VVTESQKEQHSELDKSSIHS", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807" }, { "database": "PubMed", "id": "9453548", "url": "https://glygen.org/publication/PubMed/9453548" }, { "database": "iPTMnet", "id": "P21807", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P21807" } ], "site_lbl": "Tyr468" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "28", "end_pos": "28" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P21807-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "P21807-1", "length": 468, "uniprot_id": "PERI_RAT", "protein_name": "Peripherin", "refseq_ac": "", "refseq_name": "", "gene_name": "Prph", "gene_names_uniprotkb": "Prph; Prph1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807" }, { "database": "iPTMnet", "id": "P21807", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P21807" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P21807", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P21807", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GAFSYSSSSRFSSSRLLGSG", "down_seq": "PSSSARLGSFRAPRAGALRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P21807", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P21807" } ], "site_lbl": "Ser50" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "28", "end_pos": "28" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "P21807-1.59.59", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P21807-1.59.59", "start_pos": 59, "end_pos": 59, "uniprot_canonical_ac": "P21807-1", "length": 468, "uniprot_id": "PERI_RAT", "protein_name": "Peripherin", "refseq_ac": "", "refseq_name": "", "gene_name": "Prph", "gene_names_uniprotkb": "Prph; Prph1", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RFSSSRLLGSGSPSSSARLG", "down_seq": "FRAPRAGALRLPSERLDFSM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P21807", "url": "https://www.uniprot.org/uniprotkb/P21807" } ], "site_lbl": "Ser59" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "28", "end_pos": "28" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P21807-1.50.50", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35867-1.201.201", "start_pos": 201, "end_pos": 201, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NRGSSDSLDSLSPRTEAVSP", "down_seq": "VSQLSAVFENSESPGAITPG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr201", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O35867-1.192.192", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O35867-1.219.219", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35867-1.219.219", "start_pos": 219, "end_pos": 219, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SPTVSQLSAVFENSESPGAI", "down_seq": "PGKAENSNYSVTGHYPLNLP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr219", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O35867-1.201.201", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35867-1.461.461", "start_pos": 461, "end_pos": 461, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Regulation of neurabin I interaction with protein phosphatase 1 by phosphorylation.", "journal": "Biochemistry", "date": "1999", "authors": "McAvoy T, Allen PB, Obaishi H, Nakanishi H, Takai Y, Greengard P, Nairn AC, Hemmings HC Jr", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "reference": [ { "type": "PubMed", "id": "10504266", "url": "https://glygen.org/publication/PubMed/10504266" } ] } ], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10504266", "url": "https://glygen.org/publication/PubMed/10504266", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEIVGLPQEEEIPANRKIKF", "down_seq": "CAPIKVFNTYSNEDYDRRND", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "E", "comment": "35-fold decrease in inhibition of PP1-alpha.", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "PubMed", "id": "10504266", "url": "https://glygen.org/publication/PubMed/10504266" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" }, { "database": "PubMed", "id": "10504266", "url": "https://glygen.org/publication/PubMed/10504266" } ], "site_lbl": "Ser461" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35867-1.516.517", "start_pos": 516, "end_pos": 517, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Regulation of neurabin I interaction with protein phosphatase 1 by phosphorylation.", "journal": "Biochemistry", "date": "1999", "authors": "McAvoy T, Allen PB, Obaishi H, Nakanishi H, Takai Y, Greengard P, Nairn AC, Hemmings HC Jr", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "reference": [ { "type": "PubMed", "id": "10504266", "url": "https://glygen.org/publication/PubMed/10504266" } ] } ], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10504266", "url": "https://glygen.org/publication/PubMed/10504266", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "GI", "start_aa": "G", "up_seq": "KRVEKLELFPVELEKDEDGL", "down_seq": "SIIGMGVGADAGLEKLGIFV", "mutagenesis": [ { "sequence_org": "GI", "sequence_mut": "AA", "comment": "Abolishes P70-S6K binding.", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "PubMed", "id": "10504266", "url": "https://glygen.org/publication/PubMed/10504266" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35867-1.192.192", "start_pos": 192, "end_pos": 192, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QDEWGGSKSNRGSSDSLDSL", "down_seq": "PRTEAVSPTVSQLSAVFENS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "site_lbl": "Ser192" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "O35867-1.201.201", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35867-1.312.312", "start_pos": 312, "end_pos": 312, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LPSEERQLSTEAEDVTAQPD", "down_seq": "PDSTDKDSPGEPSAESQAMP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "site_lbl": "Thr312" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35867-1.338.338", "start_pos": 338, "end_pos": 338, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KDSPGEPSAESQAMPKSNTL", "down_seq": "RPKEPLEDAEANVVGSEAEQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "site_lbl": "Ser338" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35867-1.372.372", "start_pos": 372, "end_pos": 372, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VGSEAEQPQRRDLTGGGDLT", "down_seq": "PDASASSCGKEVPEDSNSFE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "site_lbl": "Ser372" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35867-1.841.841", "start_pos": 841, "end_pos": 841, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLKQNGTQVNNNNNIFERRP", "down_seq": "PGEVSKGDTMENVEVKQTSC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "site_lbl": "Ser841" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O35867-1.916.916", "start_pos": 916, "end_pos": 916, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RQRPTRTRLYDSVSSTDGED", "down_seq": "LERKNFTFNDDFSPSSTSSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "site_lbl": "Ser916" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "O35867-1.929.929", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35867-1.929.929", "start_pos": 929, "end_pos": 929, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSTDGEDSLERKNFTFNDDF", "down_seq": "PSSTSSADLSGLGAEPKTPG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "site_lbl": "Ser929" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O35867-1.916.916", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35867-1.957.957", "start_pos": 957, "end_pos": 957, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DLSGLGAEPKTPGLSQSLAL", "down_seq": "SDESLDMIDDEILDDGQSPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "site_lbl": "Ser957" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O35867-1.958.958", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O35867-1.961.961", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O35867-1.975.975", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35867-1.958.958", "start_pos": 958, "end_pos": 958, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSGLGAEPKTPGLSQSLALS", "down_seq": "DESLDMIDDEILDDGQSPKH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "site_lbl": "Ser958" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O35867-1.957.957", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O35867-1.961.961", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O35867-1.975.975", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35867-1.961.961", "start_pos": 961, "end_pos": 961, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGAEPKTPGLSQSLALSSDE", "down_seq": "LDMIDDEILDDGQSPKHTQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "site_lbl": "Ser961" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O35867-1.957.957", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O35867-1.958.958", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O35867-1.975.975", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O35867-1.975.975", "start_pos": 975, "end_pos": 975, "uniprot_canonical_ac": "O35867-1", "length": 1095, "uniprot_id": "NEB1_RAT", "protein_name": "Neurabin-1", "refseq_ac": "NP_445925", "refseq_name": "neurabin-1 isoform 2", "gene_name": "Ppp1r9a", "gene_names_uniprotkb": "Ppp1r9a", "gene_names_refseq": "Neb1; PP1bp175; Ppp1r9a; p180", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ALSSDESLDMIDDEILDDGQ", "down_seq": "PKHTQSQSRAVHEWSVQQVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O35867", "url": "https://www.uniprot.org/uniprotkb/O35867" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O35867", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O35867" } ], "site_lbl": "Ser975" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "201", "end_pos": "201" }, { "start_pos": "219", "end_pos": "219" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "461", "end_pos": "461" }, { "start_pos": "516", "end_pos": "517" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "192", "end_pos": "192" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "461", "end_pos": "461" }, { "start_pos": "841", "end_pos": "841" }, { "start_pos": "916", "end_pos": "916" }, { "start_pos": "929", "end_pos": "929" }, { "start_pos": "957", "end_pos": "957" }, { "start_pos": "958", "end_pos": "958" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O35867-1.957.957", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O35867-1.958.958", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O35867-1.961.961", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O54701-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "O54701-1", "length": 670, "uniprot_id": "NCKX2_RAT", "protein_name": "Sodium/potassium/calcium exchanger 2", "refseq_ac": "NP_113931", "refseq_name": "sodium/potassium/calcium exchanger 2", "gene_name": "Slc24a2", "gene_names_uniprotkb": "Slc24a2; Nckx2", "gene_names_refseq": "Nckx2; Slc24a2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54701", "url": "https://www.uniprot.org/uniprotkb/O54701" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O54701", "url": "https://www.uniprot.org/uniprotkb/O54701", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NDKIRDYTPQPPASQEDRSE", "down_seq": "GTDHAQGDYPKDVFSLEERR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn112", "evidence": [ { "id": "O54701", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O54701#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "337", "end_pos": "337" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O54701-1.337.337", "start_pos": 337, "end_pos": 337, "uniprot_canonical_ac": "O54701-1", "length": 670, "uniprot_id": "NCKX2_RAT", "protein_name": "Sodium/potassium/calcium exchanger 2", "refseq_ac": "NP_113931", "refseq_name": "sodium/potassium/calcium exchanger 2", "gene_name": "Slc24a2", "gene_names_uniprotkb": "Slc24a2; Nckx2", "gene_names_refseq": "Nckx2; Slc24a2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54701", "url": "https://www.uniprot.org/uniprotkb/O54701" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O54701", "url": "https://www.uniprot.org/uniprotkb/O54701" }, { "database": "iPTMnet", "id": "O54701", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54701" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O54701", "url": "https://www.uniprot.org/uniprotkb/O54701", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O54701", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54701", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DKEEPTLPNKPRLQRGGSSA", "down_seq": "LHNSLMRNSIFQLMIHTLDP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O54701", "url": "https://www.uniprot.org/uniprotkb/O54701" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O54701", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54701" } ], "site_lbl": "Ser337" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "337", "end_pos": "337" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O54701-1.341.341", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O54701-1.341.341", "start_pos": 341, "end_pos": 341, "uniprot_canonical_ac": "O54701-1", "length": 670, "uniprot_id": "NCKX2_RAT", "protein_name": "Sodium/potassium/calcium exchanger 2", "refseq_ac": "NP_113931", "refseq_name": "sodium/potassium/calcium exchanger 2", "gene_name": "Slc24a2", "gene_names_uniprotkb": "Slc24a2; Nckx2", "gene_names_refseq": "Nckx2; Slc24a2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54701", "url": "https://www.uniprot.org/uniprotkb/O54701" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "O54701", "url": "https://www.uniprot.org/uniprotkb/O54701" }, { "database": "iPTMnet", "id": "O54701", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54701" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "O54701", "url": "https://www.uniprot.org/uniprotkb/O54701", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O54701", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54701", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTLPNKPRLQRGGSSASLHN", "down_seq": "LMRNSIFQLMIHTLDPLAEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O54701", "url": "https://www.uniprot.org/uniprotkb/O54701" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "O54701", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54701" } ], "site_lbl": "Ser341" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "337", "end_pos": "337" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O54701-1.337.337", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O54701-1.365.365", "start_pos": 365, "end_pos": 365, "uniprot_canonical_ac": "O54701-1", "length": 670, "uniprot_id": "NCKX2_RAT", "protein_name": "Sodium/potassium/calcium exchanger 2", "refseq_ac": "NP_113931", "refseq_name": "sodium/potassium/calcium exchanger 2", "gene_name": "Slc24a2", "gene_names_uniprotkb": "Slc24a2; Nckx2", "gene_names_refseq": "Nckx2; Slc24a2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O54701", "url": "https://www.uniprot.org/uniprotkb/O54701" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Endocytosis of somatodendritic NCKX2 is regulated by Src family kinase-dependent tyrosine phosphorylation.", "journal": "Frontiers in cellular neuroscience", "date": "2013", "authors": "Lee KH, Ho WK, Lee SH", "evidence": [ { "database": "iPTMnet", "id": "O54701", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54701" } ], "reference": [ { "type": "PubMed", "id": "23431067", "url": "https://glygen.org/publication/PubMed/23431067" } ] } ], "crossref": [ { "id": "O54701", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54701", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23431067", "url": "https://glygen.org/publication/PubMed/23431067", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "NSIFQLMIHTLDPLAEELGS", "down_seq": "GKLKYYDTMTEEGRFREKAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O54701", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O54701" }, { "database": "PubMed", "id": "23431067", "url": "https://glygen.org/publication/PubMed/23431067" } ], "site_lbl": "Tyr365" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "337", "end_pos": "337" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P06762-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "P06762-1", "length": 289, "uniprot_id": "HMOX1_RAT", "protein_name": "Heme oxygenase 1", "refseq_ac": "NP_036712", "refseq_name": "heme oxygenase 1", "gene_name": "Hmox1", "gene_names_uniprotkb": "Hmox1", "gene_names_refseq": "HEOXG; Heox; Hmox1; Hmox; Ho-1; Ho1; hsp32", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P06762", "url": "https://www.uniprot.org/uniprotkb/P06762" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P06762", "url": "https://www.uniprot.org/uniprotkb/P06762", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LNIELFEELQALLTEEHKDQ", "down_seq": "PSQTEFLRQRPASLVQDTTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P06762", "url": "https://www.uniprot.org/uniprotkb/P06762" } ], "site_lbl": "Ser229" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "229", "end_pos": "229" }, { "start_pos": "242", "end_pos": "242" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "P06762-1.242.242", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P06762-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "P06762-1", "length": 289, "uniprot_id": "HMOX1_RAT", "protein_name": "Heme oxygenase 1", "refseq_ac": "NP_036712", "refseq_name": "heme oxygenase 1", "gene_name": "Hmox1", "gene_names_uniprotkb": "Hmox1", "gene_names_refseq": "HEOXG; Heox; Hmox1; Hmox; Ho-1; Ho1; hsp32", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P06762", "url": "https://www.uniprot.org/uniprotkb/P06762" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P06762", "url": "https://www.uniprot.org/uniprotkb/P06762" }, { "database": "iPTMnet", "id": "P06762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P06762" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P06762", "url": "https://www.uniprot.org/uniprotkb/P06762", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P06762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P06762", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TEEHKDQSPSQTEFLRQRPA", "down_seq": "LVQDTTSAETPRGKSQISTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P06762", "url": "https://www.uniprot.org/uniprotkb/P06762" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P06762", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P06762" } ], "site_lbl": "Ser242" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "229", "end_pos": "229" }, { "start_pos": "242", "end_pos": "242" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P06762-1.229.229", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P31423-1.301.301", "start_pos": 301, "end_pos": 301, "uniprot_canonical_ac": "P31423-1", "length": 912, "uniprot_id": "GRM4_RAT", "protein_name": "Metabotropic glutamate receptor 4", "refseq_ac": "NP_073157", "refseq_name": "metabotropic glutamate receptor 4 precursor", "gene_name": "Grm4", "gene_names_uniprotkb": "Grm4; Gprc1d; Mglur4", "gene_names_refseq": "Grm4; mGluR4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31423", "url": "https://www.uniprot.org/uniprotkb/P31423" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31423", "url": "https://www.uniprot.org/uniprotkb/P31423", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IIIFANEDDIRRVLEAARRA", "down_seq": "QTGHFFWMGSDSWGSKSAPV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn301", "evidence": [ { "id": "P31423", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P31423#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31423-1.454.454", "start_pos": 454, "end_pos": 454, "uniprot_canonical_ac": "P31423-1", "length": 912, "uniprot_id": "GRM4_RAT", "protein_name": "Metabotropic glutamate receptor 4", "refseq_ac": "NP_073157", "refseq_name": "metabotropic glutamate receptor 4 precursor", "gene_name": "Grm4", "gene_names_uniprotkb": "Grm4; Gprc1d; Mglur4", "gene_names_refseq": "Grm4; mGluR4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31423", "url": "https://www.uniprot.org/uniprotkb/P31423" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31423", "url": "https://www.uniprot.org/uniprotkb/P31423", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LCPRMDPVDGTQLLKYIRNV", "down_seq": "FSGIAGNPVTFNENGDAPGR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn454", "evidence": [ { "id": "P31423", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P31423#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31423-1.484.484", "start_pos": 484, "end_pos": 484, "uniprot_canonical_ac": "P31423-1", "length": 912, "uniprot_id": "GRM4_RAT", "protein_name": "Metabotropic glutamate receptor 4", "refseq_ac": "NP_073157", "refseq_name": "metabotropic glutamate receptor 4 precursor", "gene_name": "Grm4", "gene_names_uniprotkb": "Grm4; Gprc1d; Mglur4", "gene_names_refseq": "Grm4; mGluR4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31423", "url": "https://www.uniprot.org/uniprotkb/P31423" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31423", "url": "https://www.uniprot.org/uniprotkb/P31423", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TFNENGDAPGRYDIYQYQLR", "down_seq": "GSAEYKVIGSWTDHLHLRIE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn484", "evidence": [ { "id": "P31423", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P31423#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31423-1.569.569", "start_pos": 569, "end_pos": 569, "uniprot_canonical_ac": "P31423-1", "length": 912, "uniprot_id": "GRM4_RAT", "protein_name": "Metabotropic glutamate receptor 4", "refseq_ac": "NP_073157", "refseq_name": "metabotropic glutamate receptor 4 precursor", "gene_name": "Grm4", "gene_names_uniprotkb": "Grm4; Gprc1d; Mglur4", "gene_names_refseq": "Grm4; mGluR4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31423", "url": "https://www.uniprot.org/uniprotkb/P31423" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31423", "url": "https://www.uniprot.org/uniprotkb/P31423", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QYQVDRYTCKTCPYDMRPTE", "down_seq": "RTSCQPIPIVKLEWDSPWAV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn569", "evidence": [ { "id": "P31423", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P31423#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31423-1.98.98", "start_pos": 98, "end_pos": 98, "uniprot_canonical_ac": "P31423-1", "length": 912, "uniprot_id": "GRM4_RAT", "protein_name": "Metabotropic glutamate receptor 4", "refseq_ac": "NP_073157", "refseq_name": "metabotropic glutamate receptor 4 precursor", "gene_name": "Grm4", "gene_names_uniprotkb": "Grm4; Gprc1d; Mglur4", "gene_names_refseq": "Grm4; mGluR4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31423", "url": "https://www.uniprot.org/uniprotkb/P31423" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P31423", "url": "https://www.uniprot.org/uniprotkb/P31423", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RLEAMLFALDRINNDPDLLP", "down_seq": "ITLGARILDTCSRDTHALEQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn98", "evidence": [ { "id": "P31423", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P31423#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P31423-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P31423-1", "length": 912, "uniprot_id": "GRM4_RAT", "protein_name": "Metabotropic glutamate receptor 4", "refseq_ac": "NP_073157", "refseq_name": "metabotropic glutamate receptor 4 precursor", "gene_name": "Grm4", "gene_names_uniprotkb": "Grm4; Gprc1d; Mglur4", "gene_names_refseq": "Grm4; mGluR4", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P31423", "url": "https://www.uniprot.org/uniprotkb/P31423" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P31423", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P31423" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P31423", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P31423", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P31423", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P31423" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "301", "end_pos": "301" }, { "start_pos": "454", "end_pos": "454" }, { "start_pos": "484", "end_pos": "484" }, { "start_pos": "569", "end_pos": "569" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49897-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "P49897-1", "length": 304, "uniprot_id": "IOD3_RAT", "protein_name": "Thyroxine 5-deiodinase", "refseq_ac": "NP_058906", "refseq_name": "thyroxine 5-deiodinase", "gene_name": "Dio3", "gene_names_uniprotkb": "Dio3; Itdi3; Txdi3", "gene_names_refseq": "5DIII; DIOIII; Dio3", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P49897", "url": "https://www.uniprot.org/uniprotkb/P49897" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Cloning and expression of a cDNA for a mammalian type III iodothyronine deiodinase.", "journal": "The Journal of biological chemistry", "date": "1995", "authors": "Croteau W, Whittemore SL, Schneider MJ, St Germain DL", "evidence": [ { "database": "UniProtKB", "id": "P49897", "url": "https://www.uniprot.org/uniprotkb/P49897" } ], "reference": [ { "type": "PubMed", "id": "7622463", "url": "https://glygen.org/publication/PubMed/7622463" } ] } ], "crossref": [ { "id": "P49897", "url": "https://www.uniprot.org/uniprotkb/P49897", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7622463", "url": "https://glygen.org/publication/PubMed/7622463", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "U", "start_aa": "U", "up_seq": "RILDYAQGTRPLVLNFGSCT", "down_seq": "PPFMARMSAFQRLVTKYQRD", "mutagenesis": [ { "sequence_org": "U", "sequence_mut": "L", "comment": "Loss of enzyme activity.", "evidence": [ { "database": "UniProtKB", "id": "P49897", "url": "https://www.uniprot.org/uniprotkb/P49897" }, { "database": "PubMed", "id": "7622463", "url": "https://glygen.org/publication/PubMed/7622463" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "170", "end_pos": "170" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4V893-1.106.106", "start_pos": 106, "end_pos": 106, "uniprot_canonical_ac": "Q4V893-1", "length": 348, "uniprot_id": "GPAM1_RAT", "protein_name": "GPALPP motifs-containing protein 1", "refseq_ac": "NP_001020046", "refseq_name": "GPALPP motifs-containing protein 1", "gene_name": "Gpalpp1", "gene_names_uniprotkb": "Gpalpp1", "gene_names_refseq": "Gpalpp1; RGD1307254", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" }, { "database": "iPTMnet", "id": "Q4V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V893" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V893", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DDDDGFFGPALPPGFKKQDD", "down_seq": "PPRPIIGPALPPGFIKSPQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V893" } ], "site_lbl": "Ser106" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "28", "end_pos": "28" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4V893-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "Q4V893-1", "length": 348, "uniprot_id": "GPAM1_RAT", "protein_name": "GPALPP motifs-containing protein 1", "refseq_ac": "NP_001020046", "refseq_name": "GPALPP motifs-containing protein 1", "gene_name": "Gpalpp1", "gene_names_uniprotkb": "Gpalpp1", "gene_names_refseq": "Gpalpp1; RGD1307254", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" }, { "database": "iPTMnet", "id": "Q4V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V893" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V893", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGFIKSPQKNDKGRENPGQV", "down_seq": "PFFNSEEAESGEDEDIVGPM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V893" } ], "site_lbl": "Ser138" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "28", "end_pos": "28" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q4V893-1.143.143", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q4V893-1.148.148", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4V893-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "Q4V893-1", "length": 348, "uniprot_id": "GPAM1_RAT", "protein_name": "GPALPP motifs-containing protein 1", "refseq_ac": "NP_001020046", "refseq_name": "GPALPP motifs-containing protein 1", "gene_name": "Gpalpp1", "gene_names_uniprotkb": "Gpalpp1", "gene_names_refseq": "Gpalpp1; RGD1307254", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" }, { "database": "iPTMnet", "id": "Q4V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V893" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V893", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPQKNDKGRENPGQVSPFFN", "down_seq": "EEAESGEDEDIVGPMPAKGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V893" } ], "site_lbl": "Ser143" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "28", "end_pos": "28" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q4V893-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q4V893-1.148.148", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4V893-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "Q4V893-1", "length": 348, "uniprot_id": "GPAM1_RAT", "protein_name": "GPALPP motifs-containing protein 1", "refseq_ac": "NP_001020046", "refseq_name": "GPALPP motifs-containing protein 1", "gene_name": "Gpalpp1", "gene_names_uniprotkb": "Gpalpp1", "gene_names_refseq": "Gpalpp1; RGD1307254", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" }, { "database": "iPTMnet", "id": "Q4V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V893" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V893", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DKGRENPGQVSPFFNSEEAE", "down_seq": "GEDEDIVGPMPAKGPVDYSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4V893", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4V893" } ], "site_lbl": "Ser148" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "28", "end_pos": "28" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q4V893-1.138.138", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q4V893-1.143.143", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4V893-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "Q4V893-1", "length": 348, "uniprot_id": "GPAM1_RAT", "protein_name": "GPALPP motifs-containing protein 1", "refseq_ac": "NP_001020046", "refseq_name": "GPALPP motifs-containing protein 1", "gene_name": "Gpalpp1", "gene_names_uniprotkb": "Gpalpp1", "gene_names_refseq": "Gpalpp1; RGD1307254", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PALPPGFKERATVEDQERDP", "down_seq": "PVAGPALPPNYRSSSSDSSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4V893", "url": "https://www.uniprot.org/uniprotkb/Q4V893" } ], "site_lbl": "Ser28" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "28", "end_pos": "28" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5DT37-1.125.125", "start_pos": 125, "end_pos": 125, "uniprot_canonical_ac": "Q5DT37-1", "length": 247, "uniprot_id": "KLRI2_RAT", "protein_name": "Killer cell lectin-like receptor subfamily I member 2", "refseq_ac": "NP_001012666", "refseq_name": "killer cell lectin-like receptor subfamily I member 2", "gene_name": "Klri2", "gene_names_uniprotkb": "Klri2", "gene_names_refseq": "Klri2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5DT37", "url": "https://www.uniprot.org/uniprotkb/Q5DT37" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5DT37", "url": "https://www.uniprot.org/uniprotkb/Q5DT37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SRGEKRSRELSLLDSLCLKN", "down_seq": "DSFCDLCSHDWIAFGNNFYL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn125", "evidence": [ { "id": "Q5DT37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5DT37#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "218", "end_pos": "218" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5DT37-1.196.196", "start_pos": 196, "end_pos": 196, "uniprot_canonical_ac": "Q5DT37-1", "length": 247, "uniprot_id": "KLRI2_RAT", "protein_name": "Killer cell lectin-like receptor subfamily I member 2", "refseq_ac": "NP_001012666", "refseq_name": "killer cell lectin-like receptor subfamily I member 2", "gene_name": "Klri2", "gene_names_uniprotkb": "Klri2", "gene_names_refseq": "Klri2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5DT37", "url": "https://www.uniprot.org/uniprotkb/Q5DT37" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5DT37", "url": "https://www.uniprot.org/uniprotkb/Q5DT37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LENLLLFEINGWILFKTDAI", "down_seq": "RSLRKNYIKIHQTLFNDSEK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn196", "evidence": [ { "id": "Q5DT37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5DT37#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "218", "end_pos": "218" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "Q5DT37-1.212.212", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5DT37-1.212.212", "start_pos": 212, "end_pos": 212, "uniprot_canonical_ac": "Q5DT37-1", "length": 247, "uniprot_id": "KLRI2_RAT", "protein_name": "Killer cell lectin-like receptor subfamily I member 2", "refseq_ac": "NP_001012666", "refseq_name": "killer cell lectin-like receptor subfamily I member 2", "gene_name": "Klri2", "gene_names_uniprotkb": "Klri2", "gene_names_refseq": "Klri2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5DT37", "url": "https://www.uniprot.org/uniprotkb/Q5DT37" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5DT37", "url": "https://www.uniprot.org/uniprotkb/Q5DT37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TDAINRSLRKNYIKIHQTLF", "down_seq": "DSEKKNHSCHYLSGNQFSAG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn212", "evidence": [ { "id": "Q5DT37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5DT37#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "218", "end_pos": "218" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q5DT37-1.196.196", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q5DT37-1.218.218", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5DT37-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "Q5DT37-1", "length": 247, "uniprot_id": "KLRI2_RAT", "protein_name": "Killer cell lectin-like receptor subfamily I member 2", "refseq_ac": "NP_001012666", "refseq_name": "killer cell lectin-like receptor subfamily I member 2", "gene_name": "Klri2", "gene_names_uniprotkb": "Klri2", "gene_names_refseq": "Klri2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5DT37", "url": "https://www.uniprot.org/uniprotkb/Q5DT37" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5DT37", "url": "https://www.uniprot.org/uniprotkb/Q5DT37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SLRKNYIKIHQTLFNDSEKK", "down_seq": "HSCHYLSGNQFSAGDCSSKK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn218", "evidence": [ { "id": "Q5DT37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5DT37#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "218", "end_pos": "218" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q5DT37-1.212.212", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5DT39-1.123.123", "start_pos": 123, "end_pos": 123, "uniprot_canonical_ac": "Q5DT39-1", "length": 243, "uniprot_id": "KLRI1_RAT", "protein_name": "Killer cell lectin-like receptor subfamily I member 1", "refseq_ac": "NP_001012667", "refseq_name": "killer cell lectin-like receptor subfamily I member 1", "gene_name": "Klri1", "gene_names_uniprotkb": "Klri1", "gene_names_refseq": "Klri1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5DT39", "url": "https://www.uniprot.org/uniprotkb/Q5DT39" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5DT39", "url": "https://www.uniprot.org/uniprotkb/Q5DT39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KLFSGQEEQYRETSLHHLLK", "down_seq": "DSSCDPCSHDWIAFGNNFYL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn123", "evidence": [ { "id": "Q5DT39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5DT39#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "214", "end_pos": "214" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5DT39-1.191.191", "start_pos": 191, "end_pos": 191, "uniprot_canonical_ac": "Q5DT39-1", "length": 243, "uniprot_id": "KLRI1_RAT", "protein_name": "Killer cell lectin-like receptor subfamily I member 1", "refseq_ac": "NP_001012667", "refseq_name": "killer cell lectin-like receptor subfamily I member 1", "gene_name": "Klri1", "gene_names_uniprotkb": "Klri1", "gene_names_refseq": "Klri1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5DT39", "url": "https://www.uniprot.org/uniprotkb/Q5DT39" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5DT39", "url": "https://www.uniprot.org/uniprotkb/Q5DT39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KAELENLLLFEINGWILVKK", "down_seq": "QTNWSSSENETKLQHTLIDE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn191", "evidence": [ { "id": "Q5DT39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5DT39#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "214", "end_pos": "214" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q5DT39-1.194.194", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q5DT39-1.200.200", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5DT39-1.194.194", "start_pos": 194, "end_pos": 194, "uniprot_canonical_ac": "Q5DT39-1", "length": 243, "uniprot_id": "KLRI1_RAT", "protein_name": "Killer cell lectin-like receptor subfamily I member 1", "refseq_ac": "NP_001012667", "refseq_name": "killer cell lectin-like receptor subfamily I member 1", "gene_name": "Klri1", "gene_names_uniprotkb": "Klri1", "gene_names_refseq": "Klri1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5DT39", "url": "https://www.uniprot.org/uniprotkb/Q5DT39" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5DT39", "url": "https://www.uniprot.org/uniprotkb/Q5DT39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LENLLLFEINGWILVKKNQT", "down_seq": "WSSSENETKLQHTLIDEKKN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn194", "evidence": [ { "id": "Q5DT39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5DT39#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "214", "end_pos": "214" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q5DT39-1.191.191", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q5DT39-1.200.200", "categories": [ "glycosylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q5DT39-1.214.214", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5DT39-1.200.200", "start_pos": 200, "end_pos": 200, "uniprot_canonical_ac": "Q5DT39-1", "length": 243, "uniprot_id": "KLRI1_RAT", "protein_name": "Killer cell lectin-like receptor subfamily I member 1", "refseq_ac": "NP_001012667", "refseq_name": "killer cell lectin-like receptor subfamily I member 1", "gene_name": "Klri1", "gene_names_uniprotkb": "Klri1", "gene_names_refseq": "Klri1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5DT39", "url": "https://www.uniprot.org/uniprotkb/Q5DT39" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5DT39", "url": "https://www.uniprot.org/uniprotkb/Q5DT39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FEINGWILVKKNQTNWSSSE", "down_seq": "ETKLQHTLIDEKKNHSCRYL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn200", "evidence": [ { "id": "Q5DT39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5DT39#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "214", "end_pos": "214" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q5DT39-1.191.191", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q5DT39-1.194.194", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q5DT39-1.214.214", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q5DT39-1.214.214", "start_pos": 214, "end_pos": 214, "uniprot_canonical_ac": "Q5DT39-1", "length": 243, "uniprot_id": "KLRI1_RAT", "protein_name": "Killer cell lectin-like receptor subfamily I member 1", "refseq_ac": "NP_001012667", "refseq_name": "killer cell lectin-like receptor subfamily I member 1", "gene_name": "Klri1", "gene_names_uniprotkb": "Klri1", "gene_names_refseq": "Klri1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q5DT39", "url": "https://www.uniprot.org/uniprotkb/Q5DT39" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q5DT39", "url": "https://www.uniprot.org/uniprotkb/Q5DT39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NWSSSENETKLQHTLIDEKK", "down_seq": "HSCRYLRGSQFIADDCSSKK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn214", "evidence": [ { "id": "Q5DT39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5DT39#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "214", "end_pos": "214" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q5DT39-1.194.194", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q5DT39-1.200.200", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62645-1.1080.1080", "start_pos": 1080, "end_pos": 1080, "uniprot_canonical_ac": "Q62645-1", "length": 1323, "uniprot_id": "NMDE4_RAT", "protein_name": "Glutamate receptor ionotropic, NMDA 2D", "refseq_ac": "NP_073634", "refseq_name": "glutamate receptor ionotropic, NMDA 2D precursor", "gene_name": "Grin2d", "gene_names_uniprotkb": "Grin2d; GluN2D", "gene_names_refseq": "GluN2D; Grin2d", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DPESQPLLGGGAGGPSAGAP", "down_seq": "APPPRRAAPPPCAYLDLEPS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1080", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1080", "end_pos": "1080" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "712", "end_pos": "712" }, { "start_pos": "89", "end_pos": "89" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1313", "end_pos": "1313" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62645-1.1296.1296", "start_pos": 1296, "end_pos": 1296, "uniprot_canonical_ac": "Q62645-1", "length": 1323, "uniprot_id": "NMDE4_RAT", "protein_name": "Glutamate receptor ionotropic, NMDA 2D", "refseq_ac": "NP_073634", "refseq_name": "glutamate receptor ionotropic, NMDA 2D precursor", "gene_name": "Grin2d", "gene_names_uniprotkb": "Grin2d; GluN2D", "gene_names_refseq": "GluN2D; Grin2d", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GPSRHARRCPHAAHWGPPLP", "down_seq": "ASHRRHRGGDLGTRRGSAHF", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1296", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1080", "end_pos": "1080" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "712", "end_pos": "712" }, { "start_pos": "89", "end_pos": "89" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1313", "end_pos": "1313" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "Q62645-1.1313.1313", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62645-1.349.349", "start_pos": 349, "end_pos": 349, "uniprot_canonical_ac": "Q62645-1", "length": 1323, "uniprot_id": "NMDE4_RAT", "protein_name": "Glutamate receptor ionotropic, NMDA 2D", "refseq_ac": "NP_073634", "refseq_name": "glutamate receptor ionotropic, NMDA 2D precursor", "gene_name": "Grin2d", "gene_names_uniprotkb": "Grin2d; GluN2D", "gene_names_refseq": "GluN2D; Grin2d", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QALLRDYGFLPELGHDCRTQ", "down_seq": "RTHRGESLHRYFMNITWDNR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn349", "evidence": [ { "id": "Q62645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q62645#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1080", "end_pos": "1080" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "712", "end_pos": "712" }, { "start_pos": "89", "end_pos": "89" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1313", "end_pos": "1313" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q62645-1.363.363", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62645-1.363.363", "start_pos": 363, "end_pos": 363, "uniprot_canonical_ac": "Q62645-1", "length": 1323, "uniprot_id": "NMDE4_RAT", "protein_name": "Glutamate receptor ionotropic, NMDA 2D", "refseq_ac": "NP_073634", "refseq_name": "glutamate receptor ionotropic, NMDA 2D precursor", "gene_name": "Grin2d", "gene_names_uniprotkb": "Grin2d; GluN2D", "gene_names_refseq": "GluN2D; Grin2d", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HDCRTQNRTHRGESLHRYFM", "down_seq": "ITWDNRDYSFNEDGFLVNPS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn363", "evidence": [ { "id": "Q62645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q62645#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1080", "end_pos": "1080" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "712", "end_pos": "712" }, { "start_pos": "89", "end_pos": "89" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1313", "end_pos": "1313" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q62645-1.349.349", "categories": [ "glycosylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q62645-1.381.381", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62645-1.381.381", "start_pos": 381, "end_pos": 381, "uniprot_canonical_ac": "Q62645-1", "length": 1323, "uniprot_id": "NMDE4_RAT", "protein_name": "Glutamate receptor ionotropic, NMDA 2D", "refseq_ac": "NP_073634", "refseq_name": "glutamate receptor ionotropic, NMDA 2D precursor", "gene_name": "Grin2d", "gene_names_uniprotkb": "Grin2d; GluN2D", "gene_names_refseq": "GluN2D; Grin2d", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FMNITWDNRDYSFNEDGFLV", "down_seq": "PSLVVISLTRDRTWEVVGSW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn381", "evidence": [ { "id": "Q62645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q62645#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1080", "end_pos": "1080" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "712", "end_pos": "712" }, { "start_pos": "89", "end_pos": "89" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1313", "end_pos": "1313" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q62645-1.363.363", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62645-1.464.464", "start_pos": 464, "end_pos": 464, "uniprot_canonical_ac": "Q62645-1", "length": 1323, "uniprot_id": "NMDE4_RAT", "protein_name": "Glutamate receptor ionotropic, NMDA 2D", "refseq_ac": "NP_073634", "refseq_name": "glutamate receptor ionotropic, NMDA 2D precursor", "gene_name": "Grin2d", "gene_names_uniprotkb": "Grin2d; GluN2D", "gene_names_refseq": "GluN2D; Grin2d", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PADPISGTCIRDSVPCRSQL", "down_seq": "RTHSPPPDAPRPEKRCCKGF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn464", "evidence": [ { "id": "Q62645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q62645#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1080", "end_pos": "1080" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "712", "end_pos": "712" }, { "start_pos": "89", "end_pos": "89" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1313", "end_pos": "1313" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62645-1.566.566", "start_pos": 566, "end_pos": 566, "uniprot_canonical_ac": "Q62645-1", "length": 1323, "uniprot_id": "NMDE4_RAT", "protein_name": "Glutamate receptor ionotropic, NMDA 2D", "refseq_ac": "NP_073634", "refseq_name": "glutamate receptor ionotropic, NMDA 2D precursor", "gene_name": "Grin2d", "gene_names_uniprotkb": "Grin2d; GluN2D", "gene_names_refseq": "GluN2D; Grin2d", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IVDFSVPFVETGISVMVARS", "down_seq": "GTVSPSAFLEPYSPAVWVMM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn566", "evidence": [ { "id": "Q62645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q62645#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1080", "end_pos": "1080" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "712", "end_pos": "712" }, { "start_pos": "89", "end_pos": "89" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1313", "end_pos": "1313" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62645-1.712.712", "start_pos": 712, "end_pos": 712, "uniprot_canonical_ac": "Q62645-1", "length": 1323, "uniprot_id": "NMDE4_RAT", "protein_name": "Glutamate receptor ionotropic, NMDA 2D", "refseq_ac": "NP_073634", "refseq_name": "glutamate receptor ionotropic, NMDA 2D precursor", "gene_name": "Grin2d", "gene_names_uniprotkb": "Grin2d; GluN2D", "gene_names_refseq": "GluN2D; Grin2d", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DRKFQRPQEQYPPLKFGTVP", "down_seq": "GSTEKNIRSNYPDMHSYMVR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn712", "evidence": [ { "id": "Q62645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q62645#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1080", "end_pos": "1080" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "712", "end_pos": "712" }, { "start_pos": "89", "end_pos": "89" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1313", "end_pos": "1313" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62645-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "Q62645-1", "length": 1323, "uniprot_id": "NMDE4_RAT", "protein_name": "Glutamate receptor ionotropic, NMDA 2D", "refseq_ac": "NP_073634", "refseq_name": "glutamate receptor ionotropic, NMDA 2D precursor", "gene_name": "Grin2d", "gene_names_uniprotkb": "Grin2d; GluN2D", "gene_names_refseq": "GluN2D; Grin2d", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AVAAAVRSPGLDVRPVALVL", "down_seq": "GSDPRSLVLQLCDLLSGLRV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn89", "evidence": [ { "id": "Q62645", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q62645#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1080", "end_pos": "1080" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "712", "end_pos": "712" }, { "start_pos": "89", "end_pos": "89" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1313", "end_pos": "1313" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62645-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q62645-1", "length": 1323, "uniprot_id": "NMDE4_RAT", "protein_name": "Glutamate receptor ionotropic, NMDA 2D", "refseq_ac": "NP_073634", "refseq_name": "glutamate receptor ionotropic, NMDA 2D precursor", "gene_name": "Grin2d", "gene_names_uniprotkb": "Grin2d; GluN2D", "gene_names_refseq": "GluN2D; Grin2d", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q62645", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q62645" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62645", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q62645", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "Q62645", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q62645" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1080", "end_pos": "1080" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "712", "end_pos": "712" }, { "start_pos": "89", "end_pos": "89" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1313", "end_pos": "1313" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q62645-1.1313.1313", "start_pos": 1313, "end_pos": 1313, "uniprot_canonical_ac": "Q62645-1", "length": 1323, "uniprot_id": "NMDE4_RAT", "protein_name": "Glutamate receptor ionotropic, NMDA 2D", "refseq_ac": "NP_073634", "refseq_name": "glutamate receptor ionotropic, NMDA 2D precursor", "gene_name": "Grin2d", "gene_names_uniprotkb": "Grin2d; GluN2D", "gene_names_refseq": "GluN2D; Grin2d", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLPTASHRRHRGGDLGTRRG", "down_seq": "AHFSSLESEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62645", "url": "https://www.uniprot.org/uniprotkb/Q62645" } ], "site_lbl": "Ser1313" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1080", "end_pos": "1080" }, { "start_pos": "1296", "end_pos": "1296" }, { "start_pos": "349", "end_pos": "349" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "566", "end_pos": "566" }, { "start_pos": "712", "end_pos": "712" }, { "start_pos": "89", "end_pos": "89" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1313", "end_pos": "1313" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q62645-1.1296.1296", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q64289-1.259.259", "start_pos": 259, "end_pos": 259, "uniprot_canonical_ac": "Q64289-1", "length": 357, "uniprot_id": "NDF1_RAT", "protein_name": "Neurogenic differentiation factor 1", "refseq_ac": "NP_062091", "refseq_name": "neurogenic differentiation factor 1", "gene_name": "Neurod1", "gene_names_uniprotkb": "Neurod1; Neurod", "gene_names_refseq": "Neurod1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glucose induced MAPK signalling influences NeuroD1-mediated activation and nuclear localization.", "journal": "FEBS letters", "date": "2002", "authors": "Petersen HV, Jensen JN, Stein R, Serup P", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" }, { "database": "iPTMnet", "id": "Q64289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64289" } ], "reference": [ { "type": "PubMed", "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313" } ] } ], "crossref": [ { "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VFHVKPPPHAYSAALEPFFE", "down_seq": "PLTDCTSPSFDGPLSPPLSI", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on subcellular location.", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" }, { "database": "PubMed", "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" } ], "site_lbl": "Ser259" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "274", "end_pos": "274" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "336", "end_pos": "336" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q64289-1.262.262", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q64289-1.266.266", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q64289-1.274.274", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64289-1.262.262", "start_pos": 262, "end_pos": 262, "uniprot_canonical_ac": "Q64289-1", "length": 357, "uniprot_id": "NDF1_RAT", "protein_name": "Neurogenic differentiation factor 1", "refseq_ac": "NP_062091", "refseq_name": "neurogenic differentiation factor 1", "gene_name": "Neurod1", "gene_names_uniprotkb": "Neurod1; Neurod", "gene_names_refseq": "Neurod1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glucose induced MAPK signalling influences NeuroD1-mediated activation and nuclear localization.", "journal": "FEBS letters", "date": "2002", "authors": "Petersen HV, Jensen JN, Stein R, Serup P", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" }, { "database": "iPTMnet", "id": "Q64289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64289" } ], "reference": [ { "type": "PubMed", "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313" } ] } ], "crossref": [ { "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VKPPPHAYSAALEPFFESPL", "down_seq": "DCTSPSFDGPLSPPLSINGN", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on subcellular location.", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" }, { "database": "PubMed", "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "274", "end_pos": "274" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "336", "end_pos": "336" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q64289-1.259.259", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q64289-1.266.266", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q64289-1.274.274", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64289-1.266.266", "start_pos": 266, "end_pos": 266, "uniprot_canonical_ac": "Q64289-1", "length": 357, "uniprot_id": "NDF1_RAT", "protein_name": "Neurogenic differentiation factor 1", "refseq_ac": "NP_062091", "refseq_name": "neurogenic differentiation factor 1", "gene_name": "Neurod1", "gene_names_uniprotkb": "Neurod1; Neurod", "gene_names_refseq": "Neurod1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glucose induced MAPK signalling influences NeuroD1-mediated activation and nuclear localization.", "journal": "FEBS letters", "date": "2002", "authors": "Petersen HV, Jensen JN, Stein R, Serup P", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" }, { "database": "iPTMnet", "id": "Q64289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64289" } ], "reference": [ { "type": "PubMed", "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313" } ] } ], "crossref": [ { "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PHAYSAALEPFFESPLTDCT", "down_seq": "PSFDGPLSPPLSINGNFSFK", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on subcellular location.", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" }, { "database": "PubMed", "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" } ], "site_lbl": "Ser266" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "274", "end_pos": "274" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "336", "end_pos": "336" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q64289-1.259.259", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q64289-1.262.262", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q64289-1.274.274", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64289-1.274.274", "start_pos": 274, "end_pos": 274, "uniprot_canonical_ac": "Q64289-1", "length": 357, "uniprot_id": "NDF1_RAT", "protein_name": "Neurogenic differentiation factor 1", "refseq_ac": "NP_062091", "refseq_name": "neurogenic differentiation factor 1", "gene_name": "Neurod1", "gene_names_uniprotkb": "Neurod1; Neurod", "gene_names_refseq": "Neurod1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Glucose induced MAPK signalling influences NeuroD1-mediated activation and nuclear localization.", "journal": "FEBS letters", "date": "2002", "authors": "Petersen HV, Jensen JN, Stein R, Serup P", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" }, { "database": "iPTMnet", "id": "Q64289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64289" } ], "reference": [ { "type": "PubMed", "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313" } ] }, { "title": "Expression and cellular localization of the transcription factor NeuroD1 in the developing and adult rat pineal gland.", "journal": "Journal of pineal research", "date": "2015", "authors": "Castro AE, Benitez SG, Farias Altamirano LE, Savastano LE, Patterson SI, Munoz EM", "evidence": [ { "database": "iPTMnet", "id": "Q64289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64289" } ], "reference": [ { "type": "PubMed", "id": "25752781", "url": "https://glygen.org/publication/PubMed/25752781" } ] } ], "crossref": [ { "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q64289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64289", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25752781", "url": "https://glygen.org/publication/PubMed/25752781", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EPFFESPLTDCTSPSFDGPL", "down_seq": "PPLSINGNFSFKHEPSTEFE", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Impairs translocation from the cytoplasm to the nucleus upon glucose stimulation.", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" }, { "database": "PubMed", "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on subcellular location.", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" }, { "database": "PubMed", "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" }, { "database": "PubMed", "id": "12297313", "url": "https://glygen.org/publication/PubMed/12297313" }, { "database": "iPTMnet", "id": "Q64289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64289" }, { "database": "PubMed", "id": "25752781", "url": "https://glygen.org/publication/PubMed/25752781" } ], "site_lbl": "Ser274" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "274", "end_pos": "274" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "336", "end_pos": "336" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q64289-1.259.259", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q64289-1.262.262", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q64289-1.266.266", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q64289-1.162.162", "start_pos": 162, "end_pos": 162, "uniprot_canonical_ac": "Q64289-1", "length": 357, "uniprot_id": "NDF1_RAT", "protein_name": "Neurogenic differentiation factor 1", "refseq_ac": "NP_062091", "refseq_name": "neurogenic differentiation factor 1", "gene_name": "Neurod1", "gene_names_uniprotkb": "Neurod1; Neurod", "gene_names_refseq": "Neurod1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLRLAKNYIWALSEILRSGK", "down_seq": "PDLVSFVQTLCKGLSQPTTN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" } ], "site_lbl": "Ser162" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "274", "end_pos": "274" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "336", "end_pos": "336" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q64289-1.336.336", "start_pos": 336, "end_pos": 336, "uniprot_canonical_ac": "Q64289-1", "length": 357, "uniprot_id": "NDF1_RAT", "protein_name": "Neurogenic differentiation factor 1", "refseq_ac": "NP_062091", "refseq_name": "neurogenic differentiation factor 1", "gene_name": "Neurod1", "gene_names_uniprotkb": "Neurod1; Neurod", "gene_names_refseq": "Neurod1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Expression and cellular localization of the transcription factor NeuroD1 in the developing and adult rat pineal gland.", "journal": "Journal of pineal research", "date": "2015", "authors": "Castro AE, Benitez SG, Farias Altamirano LE, Savastano LE, Patterson SI, Munoz EM", "evidence": [ { "database": "iPTMnet", "id": "Q64289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64289" } ], "reference": [ { "type": "PubMed", "id": "25752781", "url": "https://glygen.org/publication/PubMed/25752781" } ] }, { "title": "A CaMKII-NeuroD signaling pathway specifies dendritic morphogenesis.", "journal": "Neuron", "date": "2004", "authors": "Gaudilliere B, Konishi Y, de la Iglesia N, Yao Gl, Bonni A", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" }, { "database": "iPTMnet", "id": "Q64289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64289" } ], "reference": [ { "type": "PubMed", "id": "14741104", "url": "https://glygen.org/publication/PubMed/14741104" } ] } ], "crossref": [ { "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q64289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64289", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25752781", "url": "https://glygen.org/publication/PubMed/25752781", "database": "PubMed", "categories": [ "Other" ] }, { "id": "14741104", "url": "https://glygen.org/publication/PubMed/14741104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SIFSSGAAAPRCEIPIDNIM", "down_seq": "FDSHSHHERVMSAQLNAIFH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CaMK2", "evidence": [ { "database": "UniProtKB", "id": "Q64289", "url": "https://www.uniprot.org/uniprotkb/Q64289" }, { "database": "iPTMnet", "id": "Q64289", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q64289" }, { "database": "PubMed", "id": "25752781", "url": "https://glygen.org/publication/PubMed/25752781" }, { "database": "PubMed", "id": "14741104", "url": "https://glygen.org/publication/PubMed/14741104" } ], "site_lbl": "Ser336" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "259", "end_pos": "259" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "274", "end_pos": "274" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "162", "end_pos": "162" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "266", "end_pos": "266" }, { "start_pos": "274", "end_pos": "274" }, { "start_pos": "336", "end_pos": "336" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AYG7-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVRRRRRLLDPGEAPVVPVY", "down_seq": "GKVQSSLNLIPDNSSLLKLC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "site_lbl": "Ser121" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6AYG7-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LRKKHEKEEKKMEEFPDQDI", "down_seq": "PLPQPSSRNKSRKHTEALQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "site_lbl": "Ser193" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q6AYG7-1.199.199", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6AYG7-1.199.199", "start_pos": 199, "end_pos": 199, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEEKKMEEFPDQDISPLPQP", "down_seq": "SRNKSRKHTEALQKLREVNK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "site_lbl": "Ser199" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q6AYG7-1.193.193", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6AYG7-1.309.309", "start_pos": 309, "end_pos": 309, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASHLGVSPNRILLLFGETEL", "down_seq": "PTATPRTLKLGVADIIDCVV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "site_lbl": "Ser309" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q6AYG7-1.311.311", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6AYG7-1.313.313", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6AYG7-1.311.311", "start_pos": 311, "end_pos": 311, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HLGVSPNRILLLFGETELSP", "down_seq": "ATPRTLKLGVADIIDCVVLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "site_lbl": "Thr311" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q6AYG7-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q6AYG7-1.313.313", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6AYG7-1.313.313", "start_pos": 313, "end_pos": 313, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GVSPNRILLLFGETELSPTA", "down_seq": "PRTLKLGVADIIDCVVLASS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "site_lbl": "Thr313" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q6AYG7-1.309.309", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q6AYG7-1.311.311", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6AYG7-1.364.364", "start_pos": 364, "end_pos": 364, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLRVQGKEKHQMLEISLSPD", "down_seq": "PLKVLMSHYEEAMGLSGHKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "site_lbl": "Ser364" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6AYG7-1.385.385", "start_pos": 385, "end_pos": 385, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLKVLMSHYEEAMGLSGHKL", "down_seq": "FFFDGTKLSGKELPTDLGLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "site_lbl": "Ser385" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6AYG7-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" }, { "database": "iPTMnet", "id": "Q6AYG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYG7" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AYG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYG7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PRAPRSPTRLIPDTVLVDLV", "down_seq": "DSDEEVLEVVADPGEVPVAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AYG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYG7" } ], "site_lbl": "Ser52" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q6AYG7-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AYG7-1.54.54", "start_pos": 54, "end_pos": 54, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" }, { "database": "iPTMnet", "id": "Q6AYG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYG7" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AYG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYG7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APRSPTRLIPDTVLVDLVSD", "down_seq": "DEEVLEVVADPGEVPVARLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AYG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYG7" } ], "site_lbl": "Ser54" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q6AYG7-1.52.52", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AYG7-1.83.83", "start_pos": 83, "end_pos": 83, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" }, { "database": "iPTMnet", "id": "Q6AYG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYG7" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AYG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYG7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ADPGEVPVARLPAPAAPEQD", "down_seq": "DSDSEGAAEGPAGAPRTLVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AYG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYG7" } ], "site_lbl": "Ser83" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q6AYG7-1.85.85", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6AYG7-1.87.87", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6AYG7-1.85.85", "start_pos": 85, "end_pos": 85, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGEVPVARLPAPAAPEQDSD", "down_seq": "DSEGAAEGPAGAPRTLVRRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "site_lbl": "Ser85" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q6AYG7-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q6AYG7-1.87.87", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6AYG7-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "Q6AYG7-1", "length": 414, "uniprot_id": "NF2IP_RAT", "protein_name": "NFATC2-interacting protein", "refseq_ac": "NP_001007693", "refseq_name": "NFATC2-interacting protein", "gene_name": "Nfatc2ip", "gene_names_uniprotkb": "Nfatc2ip", "gene_names_refseq": "Nfatc2ip", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" }, { "database": "iPTMnet", "id": "Q6AYG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYG7" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6AYG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYG7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVPVARLPAPAAPEQDSDSD", "down_seq": "EGAAEGPAGAPRTLVRRRRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6AYG7", "url": "https://www.uniprot.org/uniprotkb/Q6AYG7" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q6AYG7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6AYG7" } ], "site_lbl": "Ser87" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "121", "end_pos": "121" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "199", "end_pos": "199" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "313", "end_pos": "313" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" }, { "start_pos": "87", "end_pos": "87" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q6AYG7-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q6AYG7-1.85.85", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63862-1.1039.1039", "start_pos": 1039, "end_pos": 1039, "uniprot_canonical_ac": "Q63862-1", "length": 1327, "uniprot_id": "MYH11_RAT", "protein_name": "Myosin-11", "refseq_ac": "", "refseq_name": "", "gene_name": "Myh11", "gene_names_uniprotkb": "Myh11", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" }, { "database": "iPTMnet", "id": "Q63862", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63862" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63862", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63862", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ARASRDEIFATSKENEKKAK", "down_seq": "LEAELMQLQEDLAAAERARK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63862", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63862" } ], "site_lbl": "Ser1039" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1077", "end_pos": "1077" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1326", "end_pos": "1326" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63862-1.1077.1077", "start_pos": 1077, "end_pos": 1077, "uniprot_canonical_ac": "Q63862-1", "length": 1327, "uniprot_id": "MYH11_RAT", "protein_name": "Myosin-11", "refseq_ac": "", "refseq_name": "", "gene_name": "Myh11", "gene_names_uniprotkb": "Myh11", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" }, { "database": "iPTMnet", "id": "Q63862", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63862" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63862", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63862", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ARKQADLEKEELAEELASSL", "down_seq": "GRNTLQDEKRRLEARIAQLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63862", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63862" } ], "site_lbl": "Ser1077" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1077", "end_pos": "1077" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1326", "end_pos": "1326" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63862-1.1306.1306", "start_pos": 1306, "end_pos": 1306, "uniprot_canonical_ac": "Q63862-1", "length": 1327, "uniprot_id": "MYH11_RAT", "protein_name": "Myosin-11", "refseq_ac": "", "refseq_name": "", "gene_name": "Myh11", "gene_names_uniprotkb": "Myh11", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" }, { "database": "iPTMnet", "id": "Q63862", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63862" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63862", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63862", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GNEASFVPSRRAGGRRVIEN", "down_seq": "DGSEEEMDARDSDFNGTKAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63862", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63862" } ], "site_lbl": "Thr1306" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1077", "end_pos": "1077" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1326", "end_pos": "1326" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q63862-1.1309.1309", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q63862-1.1326.1326", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63862-1.1309.1309", "start_pos": 1309, "end_pos": 1309, "uniprot_canonical_ac": "Q63862-1", "length": 1327, "uniprot_id": "MYH11_RAT", "protein_name": "Myosin-11", "refseq_ac": "", "refseq_name": "", "gene_name": "Myh11", "gene_names_uniprotkb": "Myh11", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" }, { "database": "iPTMnet", "id": "Q63862", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63862" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63862", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63862", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASFVPSRRAGGRRVIENTDG", "down_seq": "EEEMDARDSDFNGTKASE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63862", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63862" } ], "site_lbl": "Ser1309" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1077", "end_pos": "1077" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1326", "end_pos": "1326" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q63862-1.1306.1306", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q63862-1.1326.1326", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63862-1.1326.1326", "start_pos": 1326, "end_pos": 1326, "uniprot_canonical_ac": "Q63862-1", "length": 1327, "uniprot_id": "MYH11_RAT", "protein_name": "Myosin-11", "refseq_ac": "", "refseq_name": "", "gene_name": "Myh11", "gene_names_uniprotkb": "Myh11", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TDGSEEEMDARDSDFNGTKA", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63862", "url": "https://www.uniprot.org/uniprotkb/Q63862" } ], "site_lbl": "Ser1326" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1077", "end_pos": "1077" }, { "start_pos": "1306", "end_pos": "1306" }, { "start_pos": "1309", "end_pos": "1309" }, { "start_pos": "1326", "end_pos": "1326" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q63862-1.1306.1306", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q63862-1.1309.1309", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P33273-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "P33273-1", "length": 490, "uniprot_id": "CP255_RAT", "protein_name": "Cytochrome P450 2C55", "refseq_ac": "", "refseq_name": "", "gene_name": "Cyp2c55", "gene_names_uniprotkb": "Cyp2c55; Cyp2c-55; Cyp2c24; LOC100361492", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P33273", "url": "https://www.uniprot.org/uniprotkb/P33273" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LLLLSLWRQSSGRGKLPPGP", "down_seq": "PLPIIGNILQIDVKDISKSF", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr34", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "34", "end_pos": "34" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q3MKQ2-1.105.105", "start_pos": 105, "end_pos": 105, "uniprot_canonical_ac": "Q3MKQ2-1", "length": 128, "uniprot_id": "BEX1_RAT", "protein_name": "Protein BEX1", "refseq_ac": "NP_001032442", "refseq_name": "protein BEX1", "gene_name": "Bex1", "gene_names_uniprotkb": "Bex1; Bex2", "gene_names_refseq": "Bex1h; Bex1; Bex2; Bex", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Bex1, a novel interactor of the p75 neurotrophin receptor, links neurotrophin signaling to the cell cycle.", "journal": "The EMBO journal", "date": "2006", "authors": "Vilar M, Murillo-Carretero M, Mira H, Magnusson K, Besset V, Ibanez CF", "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" }, { "database": "iPTMnet", "id": "Q3MKQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3MKQ2" } ], "reference": [ { "type": "PubMed", "id": "16498402", "url": "https://glygen.org/publication/PubMed/16498402" } ] } ], "crossref": [ { "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16498402", "url": "https://glygen.org/publication/PubMed/16498402", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q3MKQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3MKQ2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VQRFGEDMRQLMEKLRERQL", "down_seq": "HSLRAVSTDPPHHDHHDEFC", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes phosphorylation, leading to degradation by the proteasome.", "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" }, { "database": "PubMed", "id": "16498402", "url": "https://glygen.org/publication/PubMed/16498402" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" }, { "database": "iPTMnet", "id": "Q3MKQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3MKQ2" }, { "database": "PubMed", "id": "16498402", "url": "https://glygen.org/publication/PubMed/16498402" } ], "site_lbl": "Ser105" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "53", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3MKQ2-1.19.19", "start_pos": 19, "end_pos": 19, "uniprot_canonical_ac": "Q3MKQ2-1", "length": 128, "uniprot_id": "BEX1_RAT", "protein_name": "Protein BEX1", "refseq_ac": "NP_001032442", "refseq_name": "protein BEX1", "gene_name": "Bex1", "gene_names_uniprotkb": "Bex1; Bex2", "gene_names_refseq": "Bex1h; Bex1; Bex2; Bex", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Characterization of the Bex gene family in humans, mice, and rats.", "journal": "Gene", "date": "2005", "authors": "Alvarez E, Zhou W, Witta SE, Freed CR", "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" } ], "reference": [ { "type": "PubMed", "id": "15958283", "url": "https://glygen.org/publication/PubMed/15958283" } ] } ], "crossref": [ { "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15958283", "url": "https://glygen.org/publication/PubMed/15958283", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "MESKDQGAKNLNMENDHQ", "down_seq": "KEEKEEKPQDTIKREPVVAP", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "E", "comment": "Does not affect subcellular location.", "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" }, { "database": "PubMed", "id": "15958283", "url": "https://glygen.org/publication/PubMed/15958283" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "53", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3MKQ2-1.45.45", "start_pos": 45, "end_pos": 45, "uniprot_canonical_ac": "Q3MKQ2-1", "length": 128, "uniprot_id": "BEX1_RAT", "protein_name": "Protein BEX1", "refseq_ac": "NP_001032442", "refseq_name": "protein BEX1", "gene_name": "Bex1", "gene_names_uniprotkb": "Bex1; Bex2", "gene_names_refseq": "Bex1h; Bex1; Bex2; Bex", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Characterization of the Bex gene family in humans, mice, and rats.", "journal": "Gene", "date": "2005", "authors": "Alvarez E, Zhou W, Witta SE, Freed CR", "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" } ], "reference": [ { "type": "PubMed", "id": "15958283", "url": "https://glygen.org/publication/PubMed/15958283" } ] } ], "crossref": [ { "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15958283", "url": "https://glygen.org/publication/PubMed/15958283", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "EKPQDTIKREPVVAPTFEAG", "down_seq": "NCAPRGGRRRFRVRQPIAHY", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "E", "comment": "Does not affect subcellular location.", "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" }, { "database": "PubMed", "id": "15958283", "url": "https://glygen.org/publication/PubMed/15958283" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "53", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q3MKQ2-1.53.55", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3MKQ2-1.53.55", "start_pos": 53, "end_pos": 55, "uniprot_canonical_ac": "Q3MKQ2-1", "length": 128, "uniprot_id": "BEX1_RAT", "protein_name": "Protein BEX1", "refseq_ac": "NP_001032442", "refseq_name": "protein BEX1", "gene_name": "Bex1", "gene_names_uniprotkb": "Bex1; Bex2", "gene_names_refseq": "Bex1h; Bex1; Bex2; Bex", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Bex1, a novel interactor of the p75 neurotrophin receptor, links neurotrophin signaling to the cell cycle.", "journal": "The EMBO journal", "date": "2006", "authors": "Vilar M, Murillo-Carretero M, Mira H, Magnusson K, Besset V, Ibanez CF", "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" }, { "database": "iPTMnet", "id": "Q3MKQ2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q3MKQ2" } ], "reference": [ { "type": "PubMed", "id": "16498402", "url": "https://glygen.org/publication/PubMed/16498402" } ] } ], "crossref": [ { "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16498402", "url": "https://glygen.org/publication/PubMed/16498402", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "RRR", "start_aa": "R", "up_seq": "REPVVAPTFEAGKNCAPRGG", "down_seq": "FRVRQPIAHYRWDLMHRVGE", "mutagenesis": [ { "sequence_org": "RRR", "sequence_mut": "AAA", "comment": "Abolishes nuclear localization.", "evidence": [ { "database": "UniProtKB", "id": "Q3MKQ2", "url": "https://www.uniprot.org/uniprotkb/Q3MKQ2" }, { "database": "PubMed", "id": "16498402", "url": "https://glygen.org/publication/PubMed/16498402" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "53", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q3MKQ2-1.45.45", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P29147-1.219.219", "start_pos": 219, "end_pos": 219, "uniprot_canonical_ac": "P29147-1", "length": 343, "uniprot_id": "BDH_RAT", "protein_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "refseq_ac": "NP_446447", "refseq_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "gene_name": "Bdh1", "gene_names_uniprotkb": "Bdh1; Bdh", "gene_names_refseq": "Bdh1; Bdh", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P29147", "url": "https://www.uniprot.org/uniprotkb/P29147" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Discovery and confirmation of O-GlcNAcylated proteins in rat liver mitochondria by combination of mass spectrometry and immunological methods.", "journal": "PloS one", "date": "2013", "authors": "Cao W, Cao J, Huang J, Yao J, Yan G, Xu H, Yang P", "evidence": [ { "database": "UniProtKB", "id": "P29147", "url": "https://www.uniprot.org/uniprotkb/P29147#ptm_processing" }, { "database": "UniProtKB", "id": "P29147", "url": "https://www.uniprot.org/uniprotkb/P29147" }, { "database": "O-GlcNAc Atlas", "id": "P29147", "url": "https://oglcnac.org/atlas/detail/P29147" } ], "reference": [ { "type": "PubMed", "id": "24098488", "url": "https://glygen.org/publication/PubMed/24098488" } ] } ], "crossref": [ { "id": "24098488", "url": "https://glygen.org/publication/PubMed/24098488", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P29147", "url": "https://oglcnac.org/atlas/detail/P29147", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P29147", "url": "https://www.uniprot.org/uniprotkb/P29147", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RMANPARSPYCITKFGVEAF", "down_seq": "DCLRYEMHPLGVKVSVVEPG", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser219", "evidence": [ { "id": "24098488", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24098488" }, { "id": "P29147", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P29147" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GlcNAc) serine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser219", "evidence": [ { "id": "P29147", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P29147#ptm_processing" }, { "id": "24098488", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24098488" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "219", "end_pos": "219" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P29147-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P29147-1", "length": 343, "uniprot_id": "BDH_RAT", "protein_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "refseq_ac": "NP_446447", "refseq_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "gene_name": "Bdh1", "gene_names_uniprotkb": "Bdh1; Bdh", "gene_names_refseq": "Bdh1; Bdh", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P29147", "url": "https://www.uniprot.org/uniprotkb/P29147" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "P29147", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P29147" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P29147", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P29147", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "P29147", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P29147" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "219", "end_pos": "219" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P29147-1.246.246", "start_pos": 246, "end_pos": 246, "uniprot_canonical_ac": "P29147-1", "length": 343, "uniprot_id": "BDH_RAT", "protein_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "refseq_ac": "NP_446447", "refseq_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "gene_name": "Bdh1", "gene_names_uniprotkb": "Bdh1; Bdh", "gene_names_refseq": "Bdh1; Bdh", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P29147", "url": "https://www.uniprot.org/uniprotkb/P29147" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P29147", "url": "https://www.uniprot.org/uniprotkb/P29147" }, { "database": "iPTMnet", "id": "P29147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29147" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "P29147", "url": "https://www.uniprot.org/uniprotkb/P29147", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P29147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29147", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MHPLGVKVSVVEPGNFIAAT", "down_seq": "LYSPERIQAIAKKMWDELPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P29147", "url": "https://www.uniprot.org/uniprotkb/P29147" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "P29147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29147" } ], "site_lbl": "Ser246" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "219", "end_pos": "219" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "246", "end_pos": "246" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8CFN2-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "Q8CFN2-1", "length": 191, "uniprot_id": "CDC42_RAT", "protein_name": "Cell division control protein 42 homolog", "refseq_ac": "NP_741991", "refseq_name": "cell division control protein 42 homolog", "gene_name": "Cdc42", "gene_names_uniprotkb": "Cdc42", "gene_names_refseq": "Cdc42", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q8CFN2", "url": "https://www.uniprot.org/uniprotkb/Q8CFN2" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q8CFN2", "url": "https://www.uniprot.org/uniprotkb/Q8CFN2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VMIGGEPYTLGLFDTAGQED", "down_seq": "DRLRPLSYPQTDVFLVCFSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by SRC", "evidence": [ { "database": "UniProtKB", "id": "Q8CFN2", "url": "https://www.uniprot.org/uniprotkb/Q8CFN2" } ], "site_lbl": "Tyr64" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "64", "end_pos": "64" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1244.1244", "start_pos": 1244, "end_pos": 1244, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YQDTLDHDYGGRASQPAADG", "down_seq": "PAGLGATVYEEILQTSQSIA", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1244", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1339.1339", "start_pos": 1339, "end_pos": 1339, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Exploring the O-GlcNAc proteome: direct identification of O-GlcNAc-modified proteins from the brain.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2004", "authors": "Khidekel N, Ficarro SB, Peters EC, Hsieh-Wilson LC", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778#ptm_processing" }, { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" }, { "database": "O-GlcNAc Database", "id": "O88778", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O88778" }, { "database": "O-GlcNAc Atlas", "id": "O88778", "url": "https://oglcnac.org/atlas/detail/O88778" } ], "reference": [ { "type": "PubMed", "id": "15340146", "url": "https://glygen.org/publication/PubMed/15340146" } ] }, { "title": "Direct in-gel fluorescence detection and cellular imaging of O-GlcNAc-modified proteins.", "journal": "Journal of the American Chemical Society", "date": "2008", "authors": "Clark PM, Dweck JF, Mason DE, Hart CR, Buck SB, Peters EC, Agnew BJ, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "O88778", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O88778" } ], "reference": [ { "type": "PubMed", "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930" } ] }, { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "O88778", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O88778" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] }, { "title": "Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics.", "journal": "Nature chemical biology", "date": "2007", "authors": "Khidekel N, Ficarro SB, Clark PM, Bryan MC, Swaney DL, Rexach JE, Sun YE, Coon JJ, Peters EC, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "O88778", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O88778" }, { "database": "O-GlcNAc Atlas", "id": "O88778", "url": "https://oglcnac.org/atlas/detail/O88778" } ], "reference": [ { "type": "PubMed", "id": "17496889", "url": "https://glygen.org/publication/PubMed/17496889" } ] }, { "title": "O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry.", "journal": "Molecular & cellular proteomics : MCP", "date": "2006", "authors": "Vosseller K, Trinidad JC, Chalkley RJ, Specht CG, Thalhammer A, Lynn AJ, Snedecor JO, Guan S, Medzihradszky KF, Maltby DA, Schoepfer R, Burlingame AL", "evidence": [ { "database": "O-GlcNAc Database", "id": "O88778", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O88778" } ], "reference": [ { "type": "PubMed", "id": "16452088", "url": "https://glygen.org/publication/PubMed/16452088" } ] }, { "title": "Mapping of O-linked beta-N-acetylglucosamine modification sites in key contractile proteins of rat skeletal muscle.", "journal": "Proteomics", "date": "2009", "authors": "Hedou J, Bastide B, Page A, Michalski JC, Morelle W", "evidence": [ { "database": "O-GlcNAc Database", "id": "O88778", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O88778" } ], "reference": [ { "type": "PubMed", "id": "19322778", "url": "https://glygen.org/publication/PubMed/19322778" } ] } ], "crossref": [ { "id": "15340146", "url": "https://glygen.org/publication/PubMed/15340146", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O88778", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O88778", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "18683930", "url": "https://glygen.org/publication/PubMed/18683930", "database": "PubMed", "categories": [ "Other" ] }, { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17496889", "url": "https://glygen.org/publication/PubMed/17496889", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16452088", "url": "https://glygen.org/publication/PubMed/16452088", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19322778", "url": "https://glygen.org/publication/PubMed/19322778", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O88778", "url": "https://oglcnac.org/atlas/detail/O88778", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FPTSTSSDSSGGRVIPDVRV", "down_seq": "QHFAKEPQEPLKLHSSPASP", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1339", "evidence": [ { "id": "15340146", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/15340146" }, { "id": "O88778", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O88778" }, { "id": "18683930", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/18683930" }, { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "17496889", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/17496889" }, { "id": "16452088", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/16452088" }, { "id": "19322778", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/19322778" }, { "id": "O88778", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/O88778" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1339", "evidence": [ { "id": "O88778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88778#ptm_processing" }, { "id": "15340146", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/15340146" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88778-1.1380.1380", "start_pos": 1380, "end_pos": 1380, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SLASKEVGMTFSQGPGTPAT", "down_seq": "AMAPCPASLPRGYMTPAGPE", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1380", "evidence": [ { "id": "O88778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88778#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "O88778-1.1395.1395", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1395.1395", "start_pos": 1395, "end_pos": 1395, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GTPATTAMAPCPASLPRGYM", "down_seq": "PAGPERSPSTSSTIHSYGQP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1395", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O88778-1.1380.1380", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1666.1666", "start_pos": 1666, "end_pos": 1666, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EPGPRPPGTAVVDLRTAVKP", "down_seq": "PIILTDQGMDLTSLAVEARK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1666", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1922.1922", "start_pos": 1922, "end_pos": 1922, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FGSSCTGTFHPAPSAPDKSV", "down_seq": "DAALPGQSSGPFYSPRDPEP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1922", "evidence": [ { "id": "O88778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88778#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2284.2284", "start_pos": 2284, "end_pos": 2284, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics.", "journal": "Nature chemical biology", "date": "2007", "authors": "Khidekel N, Ficarro SB, Clark PM, Bryan MC, Swaney DL, Rexach JE, Sun YE, Coon JJ, Peters EC, Hsieh-Wilson LC", "evidence": [ { "database": "O-GlcNAc Database", "id": "O88778", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=O88778" }, { "database": "O-GlcNAc Atlas", "id": "O88778", "url": "https://oglcnac.org/atlas/detail/O88778" } ], "reference": [ { "type": "PubMed", "id": "17496889", "url": "https://glygen.org/publication/PubMed/17496889" } ] } ], "crossref": [ { "id": "17496889", "url": "https://glygen.org/publication/PubMed/17496889", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O88778", "url": "https://oglcnac.org/atlas/detail/O88778", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STIPPAEGPVYLGKPAAAKA", "down_seq": "GAGGPPRPELPAGGAREEPL", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser2284", "evidence": [ { "id": "17496889", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/17496889" }, { "id": "O88778", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/O88778" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88778-1.2307.2307", "start_pos": 2307, "end_pos": 2307, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GGPPRPELPAGGAREEPLST", "down_seq": "APPAVIKEAPVAQAPAPPPG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2307", "evidence": [ { "id": "O88778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88778#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2510.2510", "start_pos": 2510, "end_pos": 2510, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AQNGQYWPPLTHTAFIAVAG", "down_seq": "EGPGQAREPVLHRGLPSSAS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2510", "evidence": [ { "id": "O88778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88778#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2685.2685", "start_pos": 2685, "end_pos": 2685, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DCSVQTEPEQLPRVSPAIHI", "down_seq": "AATDPKVEIVRYISAPEKTG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2685", "evidence": [ { "id": "O88778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88778#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2732.2732", "start_pos": 2732, "end_pos": 2732, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CQTEPDGQAQGVAGPQLIGP", "down_seq": "AISPYLPGIQIVTPGALGRF", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2732", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.288.288", "start_pos": 288, "end_pos": 288, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ATQSGPRQAEAARATSVPGP", "down_seq": "QATAPPEVGRVSPQPPLSTK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr288", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2930.2930", "start_pos": 2930, "end_pos": 2930, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QLYAASLLQRGLAGPTTVPA", "down_seq": "KASLLRELDRDLRLVEHEST", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2930", "evidence": [ { "id": "O88778", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O88778#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.3038.3038", "start_pos": 3038, "end_pos": 3038, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GCTTPAGQYVDYPASAAVPA", "down_seq": "PSGPTAFQQPRFPPAATQYT", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3038", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.3116.3116", "start_pos": 3116, "end_pos": 3116, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AEPGLPSQPAFHPTGHYAAP", "down_seq": "PMPTTQSAPFPVQADSHAAH", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3116", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.3387.3387", "start_pos": 3387, "end_pos": 3387, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FSPIEEAKDVESDLASYPPP", "down_seq": "VSSSLTSRSRKFQDEITYGL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3387", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O88778-1.3368.3368", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.3840.3840", "start_pos": 3840, "end_pos": 3840, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TTRSTAPAASHPAGKPQPGP", "down_seq": "TAPGPQPAGLPRAEQAGSSK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3840", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.3892.3892", "start_pos": 3892, "end_pos": 3892, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PQAQSAPGPAGAKTGARPGG", "down_seq": "PGAPAGQPAAEGESVFSKIL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3892", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.406.406", "start_pos": 406, "end_pos": 406, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SDASKEAGPRPPGSGPGPGP", "down_seq": "PGAKTEPGPRTGPGSGPGAL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr406", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.432.432", "start_pos": 432, "end_pos": 432, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EPGPRTGPGSGPGALAKTGG", "down_seq": "PSPKHGRADHQAASKAAAKP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr432", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.532.532", "start_pos": 532, "end_pos": 532, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CQTKRLLEGSLGEPAPLPLP", "down_seq": "PQEPPAGVPQRAAGASPLKQ", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr532", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ALAGGGQLPVAGAARAAGPP", "down_seq": "PGLGLVPGPGPGPGPGSVSR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr55", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.914.914", "start_pos": 914, "end_pos": 914, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PHNATTGYEELLSEEGPAEP", "down_seq": "DGALQGGLRRFKTIGLNSTG", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr914", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Functional regions of the presynaptic cytomatrix protein bassoon: significance for synaptic targeting and cytomatrix anchoring.", "journal": "Molecular and cellular neurosciences", "date": "2003", "authors": "Dresbach T, Hempelmann A, Spilker C, tom Dieck S, Altrock WD, Zuschratter W, Garner CC, Gundelfinger ED", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "reference": [ { "type": "PubMed", "id": "12812759", "url": "https://glygen.org/publication/PubMed/12812759" } ] } ], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12812759", "url": "https://glygen.org/publication/PubMed/12812759", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "M", "down_seq": "NEASLEGGAGEGPLPPGGSG", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Loss of myristoylation.", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" }, { "database": "PubMed", "id": "12812759", "url": "https://glygen.org/publication/PubMed/12812759" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O88778-1.748.748", "start_pos": 748, "end_pos": 748, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "rs199280064", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs199280064", "database": "dbSNP", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MRPSLEAQAVAPSGEWSKPP", "down_seq": "GSAVEDQKRRPHSLSIMPEA", "snv": [ { "evidence": [ { "id": "rs199280064", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs199280064" } ], "glycoeffect": [ "n-glyco-sequon-gain", "o-glyco-site-loss" ], "sequence_org": "S", "sequence_mut": "N", "comment": "Germline mutation passed 1 filters: n-glyco-sequon-gain (SGS->NGS).", "chr_id": "8", "chr_pos": "117683358", "ref_nt": "T", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "S748", "keywords": [ "ebi", "germline" ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "snv_flag" ], "glycosylation": [], "mutagenesis": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": true, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "sequence_org", "sequence_mut", "comment", "chr_id", "chr_pos", "ref_nt", "alt_nt", "minor_allelic_frequency", "site_lbl" ] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "sequence_org", "sequence_mut", "comment", "chr_id", "chr_pos", "ref_nt", "alt_nt", "minor_allelic_frequency", "site_lbl" ] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1035.1035", "start_pos": 1035, "end_pos": 1035, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KQQRKARHRSHGPLLPTIED", "down_seq": "SEEEELREEEELLREQEKMR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser1035" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O88778-1.1036.1036", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1036.1036", "start_pos": 1036, "end_pos": 1036, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQRKARHRSHGPLLPTIEDS", "down_seq": "EEEELREEEELLREQEKMRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser1036" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O88778-1.1035.1035", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1085.1085", "start_pos": 1085, "end_pos": 1085, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TARKTRRDKEELRAQRRRER", "down_seq": "KTPPSNLSPIEDASPTEELR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser1085" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O88778-1.1087.1087", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O88778-1.1093.1093", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O88778-1.1099.1099", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1087.1087", "start_pos": 1087, "end_pos": 1087, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RKTRRDKEELRAQRRRERSK", "down_seq": "PPSNLSPIEDASPTEELRQA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Thr1087" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O88778-1.1085.1085", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O88778-1.1093.1093", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O88778-1.1099.1099", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1093.1093", "start_pos": 1093, "end_pos": 1093, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KEELRAQRRRERSKTPPSNL", "down_seq": "PIEDASPTEELRQAAEMEEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser1093" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O88778-1.1085.1085", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O88778-1.1087.1087", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O88778-1.1099.1099", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1099.1099", "start_pos": 1099, "end_pos": 1099, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QRRRERSKTPPSNLSPIEDA", "down_seq": "PTEELRQAAEMEELHRSSCS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser1099" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O88778-1.1085.1085", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O88778-1.1087.1087", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O88778-1.1093.1093", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1221.1221", "start_pos": 1221, "end_pos": 1221, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGARGPHGGPSQPTGPRSQG", "down_seq": "FEYQDTLDHDYGGRASQPAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser1221" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.142.142", "start_pos": 142, "end_pos": 142, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PRRTLQVDSRTQRSGRSPSV", "down_seq": "PDRGSTPTSPYSVPQIAPLP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser142" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1470.1470", "start_pos": 1470, "end_pos": 1470, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GDGEVGPPQPSRGYSYFTGS", "down_seq": "PPLSPSTPSESPTFSPSKLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser1470" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "O88778-1.1479.1479", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O88778-1.1481.1481", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1479.1479", "start_pos": 1479, "end_pos": 1479, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSRGYSYFTGSSPPLSPSTP", "down_seq": "ESPTFSPSKLGPRATAEFST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser1479" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O88778-1.1470.1470", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O88778-1.1481.1481", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1481.1481", "start_pos": 1481, "end_pos": 1481, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGYSYFTGSSPPLSPSTPSE", "down_seq": "PTFSPSKLGPRATAEFSTQT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser1481" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O88778-1.1470.1470", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O88778-1.1479.1479", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.1978.1978", "start_pos": 1978, "end_pos": 1978, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PHEEQRPYPQGLPGRLYSSM", "down_seq": "DTNLAEAGLNYHAQRIGQLF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser1978" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2034.2034", "start_pos": 2034, "end_pos": 2034, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HSYSLGFADGRYLGQGLQYG", "down_seq": "FTDLRHPTDLLSHPLPMRPY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser2034" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.241.241", "start_pos": 241, "end_pos": 241, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RALGMDMTTAPRSKSQQQLH", "down_seq": "PALSPAHSPAKQPLGKPEQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser241" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O88778-1.245.245", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.245.245", "start_pos": 245, "end_pos": 245, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDMTTAPRSKSQQQLHSPAL", "down_seq": "PAHSPAKQPLGKPEQERSRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser245" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O88778-1.241.241", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2564.2564", "start_pos": 2564, "end_pos": 2564, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSGIKKRHSMPRLRDACEPE", "down_seq": "GPDPSTVRRIADSSVQTDDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser2564" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "O88778-1.2581.2581", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2581.2581", "start_pos": 2581, "end_pos": 2581, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EPESGPDPSTVRRIADSSVQ", "down_seq": "DDEEGEGRYLLTRRRRTRRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Thr2581" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O88778-1.2564.2564", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2608.2608", "start_pos": 2608, "end_pos": 2608, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GRYLLTRRRRTRRSADCSVQ", "down_seq": "DDEDNAEWEQPVRRRRSRLS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Thr2608" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2796.2796", "start_pos": 2796, "end_pos": 2796, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVSRQPPKSPQVLYSPVSPL", "down_seq": "PHRLLDTSFASSERLNKAHV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser2796" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2845.2845", "start_pos": 2845, "end_pos": 2845, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSTLRQQTLPRPMKTLQRSL", "down_seq": "DPKPLSPTAEESAKERFSLY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser2845" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O88778-1.2851.2851", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.2851.2851", "start_pos": 2851, "end_pos": 2851, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QTLPRPMKTLQRSLSDPKPL", "down_seq": "PTAEESAKERFSLYQHQGGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser2851" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O88778-1.2845.2845", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.3007.3007", "start_pos": 3007, "end_pos": 3007, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DRVGRDYPPLRGLGEHRDYL", "down_seq": "DSELNQLRLQGCTTPAGQYV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser3007" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.3286.3286", "start_pos": 3286, "end_pos": 3286, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EPAVLEGPTLPCCYGRGEEE", "down_seq": "EEDSYDPRGKSGHHRSMESN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser3286" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.3368.3368", "start_pos": 3368, "end_pos": 3368, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISSKRSKHRKQGMEQKISKF", "down_seq": "PIEEAKDVESDLASYPPPTV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser3368" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "O88778-1.3387.3387", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O88778-1.965.965", "start_pos": 965, "end_pos": 965, "uniprot_canonical_ac": "O88778-1", "length": 3938, "uniprot_id": "BSN_RAT", "protein_name": "Protein bassoon", "refseq_ac": "", "refseq_name": "", "gene_name": "Bsn", "gene_names_uniprotkb": "Bsn", "gene_names_refseq": "", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QGSDPNLDREPELEMESLTG", "down_seq": "PEDRSRGEHSSTLPASTPSY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O88778", "url": "https://www.uniprot.org/uniprotkb/O88778" } ], "site_lbl": "Ser965" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1244", "end_pos": "1244" }, { "start_pos": "1339", "end_pos": "1339" }, { "start_pos": "1380", "end_pos": "1380" }, { "start_pos": "1395", "end_pos": "1395" }, { "start_pos": "1666", "end_pos": "1666" }, { "start_pos": "1922", "end_pos": "1922" }, { "start_pos": "2284", "end_pos": "2284" }, { "start_pos": "2307", "end_pos": "2307" }, { "start_pos": "2510", "end_pos": "2510" }, { "start_pos": "2685", "end_pos": "2685" }, { "start_pos": "2732", "end_pos": "2732" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "2930", "end_pos": "2930" }, { "start_pos": "3038", "end_pos": "3038" }, { "start_pos": "3116", "end_pos": "3116" }, { "start_pos": "3387", "end_pos": "3387" }, { "start_pos": "3840", "end_pos": "3840" }, { "start_pos": "3892", "end_pos": "3892" }, { "start_pos": "406", "end_pos": "406" }, { "start_pos": "432", "end_pos": "432" }, { "start_pos": "532", "end_pos": "532" }, { "start_pos": "55", "end_pos": "55" }, { "start_pos": "914", "end_pos": "914" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "2", "end_pos": "2" } ] }, { "type": "snv", "site_list": [ { "start_pos": "748", "end_pos": "748" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1036", "end_pos": "1036" }, { "start_pos": "1085", "end_pos": "1085" }, { "start_pos": "1087", "end_pos": "1087" }, { "start_pos": "1093", "end_pos": "1093" }, { "start_pos": "1099", "end_pos": "1099" }, { "start_pos": "1221", "end_pos": "1221" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "1470", "end_pos": "1470" }, { "start_pos": "1479", "end_pos": "1479" }, { "start_pos": "1481", "end_pos": "1481" }, { "start_pos": "1978", "end_pos": "1978" }, { "start_pos": "2034", "end_pos": "2034" }, { "start_pos": "241", "end_pos": "241" }, { "start_pos": "245", "end_pos": "245" }, { "start_pos": "2564", "end_pos": "2564" }, { "start_pos": "2581", "end_pos": "2581" }, { "start_pos": "2608", "end_pos": "2608" }, { "start_pos": "2796", "end_pos": "2796" }, { "start_pos": "2845", "end_pos": "2845" }, { "start_pos": "2851", "end_pos": "2851" }, { "start_pos": "3007", "end_pos": "3007" }, { "start_pos": "3286", "end_pos": "3286" }, { "start_pos": "3368", "end_pos": "3368" }, { "start_pos": "965", "end_pos": "965" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9QZU7-1.351.351", "start_pos": 351, "end_pos": 351, "uniprot_canonical_ac": "Q9QZU7-1", "length": 387, "uniprot_id": "BODG_RAT", "protein_name": "Gamma-butyrobetaine dioxygenase", "refseq_ac": "NP_072151", "refseq_name": "gamma-butyrobetaine dioxygenase", "gene_name": "Bbox1", "gene_names_uniprotkb": "Bbox1; Bbh", "gene_names_refseq": "Bbh; Bbox1; Bbox", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q9QZU7", "url": "https://www.uniprot.org/uniprotkb/Q9QZU7" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q9QZU7", "url": "https://www.uniprot.org/uniprotkb/Q9QZU7" }, { "database": "iPTMnet", "id": "Q9QZU7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QZU7" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q9QZU7", "url": "https://www.uniprot.org/uniprotkb/Q9QZU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9QZU7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QZU7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KMNPGDVITFDNWRLLHGRR", "down_seq": "YEAGTEISRHLEGAYADWDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9QZU7", "url": "https://www.uniprot.org/uniprotkb/Q9QZU7" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q9QZU7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9QZU7" } ], "site_lbl": "Ser351" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "351", "end_pos": "351" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q00972-1.31.31", "start_pos": 31, "end_pos": 31, "uniprot_canonical_ac": "Q00972-1", "length": 412, "uniprot_id": "BCKD_RAT", "protein_name": "Branched-chain alpha-ketoacid dehydrogenase kinase", "refseq_ac": "NP_062117", "refseq_name": "branched-chain alpha-ketoacid dehydrogenase kinase precursor", "gene_name": "Bckdk", "gene_names_uniprotkb": "Bckdk; Kat8", "gene_names_refseq": "BDK; Bckdk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Expression and characterization of branched-chain alpha-ketoacid dehydrogenase kinase from the rat. Is it a histidine-protein kinase?", "journal": "The Journal of biological chemistry", "date": "1995", "authors": "Davie JR, Wynn RM, Meng M, Huang YS, Aalund G, Chuang DT, Lau KS", "evidence": [ { "database": "UniProtKB", "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972" }, { "database": "iPTMnet", "id": "Q00972", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00972" } ], "reference": [ { "type": "PubMed", "id": "7649998", "url": "https://glygen.org/publication/PubMed/7649998" } ] }, { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972" }, { "database": "iPTMnet", "id": "Q00972", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00972" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "7649998", "url": "https://glygen.org/publication/PubMed/7649998", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q00972", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00972", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PRSGSSLWPLLGSSLSLRVR", "down_seq": "TSATDTHHVELARERSKTVT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972" }, { "database": "PubMed", "id": "7649998", "url": "https://glygen.org/publication/PubMed/7649998" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q00972", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00972" } ], "site_lbl": "Ser31" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "31", "end_pos": "31" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "360", "end_pos": "360" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q00972-1.356.356", "start_pos": 356, "end_pos": 356, "uniprot_canonical_ac": "Q00972-1", "length": 412, "uniprot_id": "BCKD_RAT", "protein_name": "Branched-chain alpha-ketoacid dehydrogenase kinase", "refseq_ac": "NP_062117", "refseq_name": "branched-chain alpha-ketoacid dehydrogenase kinase precursor", "gene_name": "Bckdk", "gene_names_uniprotkb": "Bckdk; Kat8", "gene_names_refseq": "BDK; Bckdk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972" }, { "database": "iPTMnet", "id": "Q00972", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00972" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q00972", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00972", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AEASTQDPRISPLFGHLDMH", "down_seq": "GGQSGPMHGFGFGLPTSRAY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q00972", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00972" } ], "site_lbl": "Ser356" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "31", "end_pos": "31" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "360", "end_pos": "360" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q00972-1.360.360", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q00972-1.360.360", "start_pos": 360, "end_pos": 360, "uniprot_canonical_ac": "Q00972-1", "length": 412, "uniprot_id": "BCKD_RAT", "protein_name": "Branched-chain alpha-ketoacid dehydrogenase kinase", "refseq_ac": "NP_062117", "refseq_name": "branched-chain alpha-ketoacid dehydrogenase kinase precursor", "gene_name": "Bckdk", "gene_names_uniprotkb": "Bckdk; Kat8", "gene_names_refseq": "BDK; Bckdk", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972" }, { "database": "iPTMnet", "id": "Q00972", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00972" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q00972", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00972", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TQDPRISPLFGHLDMHSGGQ", "down_seq": "GPMHGFGFGLPTSRAYAEYL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00972", "url": "https://www.uniprot.org/uniprotkb/Q00972" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q00972", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00972" } ], "site_lbl": "Ser360" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "31", "end_pos": "31" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "360", "end_pos": "360" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q00972-1.356.356", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q66HD8-1.92.92", "start_pos": 92, "end_pos": 92, "uniprot_canonical_ac": "Q66HD8-1", "length": 507, "uniprot_id": "F221B_RAT", "protein_name": "Protein FAM221B", "refseq_ac": "NP_001013956", "refseq_name": "protein FAM221B", "gene_name": "Fam221b", "gene_names_uniprotkb": "Fam221b", "gene_names_refseq": "Fam221b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q66HD8", "url": "https://www.uniprot.org/uniprotkb/Q66HD8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LQDPSVSETPLKLDTANLPS", "down_seq": "PSQSSAQSVISLERAISKIP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr92", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "270", "end_pos": "270" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q66HD8-1.270.270", "start_pos": 270, "end_pos": 270, "uniprot_canonical_ac": "Q66HD8-1", "length": 507, "uniprot_id": "F221B_RAT", "protein_name": "Protein FAM221B", "refseq_ac": "NP_001013956", "refseq_name": "protein FAM221B", "gene_name": "Fam221b", "gene_names_uniprotkb": "Fam221b", "gene_names_refseq": "Fam221b", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q66HD8", "url": "https://www.uniprot.org/uniprotkb/Q66HD8" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q66HD8", "url": "https://www.uniprot.org/uniprotkb/Q66HD8" }, { "database": "iPTMnet", "id": "Q66HD8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q66HD8" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q66HD8", "url": "https://www.uniprot.org/uniprotkb/Q66HD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q66HD8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q66HD8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEPFPKHSVPEPSAQAKEAA", "down_seq": "ADEEEAEEEELTGGTSKTAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q66HD8", "url": "https://www.uniprot.org/uniprotkb/Q66HD8" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q66HD8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q66HD8" } ], "site_lbl": "Ser270" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "270", "end_pos": "270" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25023-1.212.212", "start_pos": 212, "end_pos": 212, "uniprot_canonical_ac": "P25023-1", "length": 396, "uniprot_id": "BKRB2_RAT", "protein_name": "B2 bradykinin receptor", "refseq_ac": "NP_775123", "refseq_name": "B2 bradykinin receptor isoform 2", "gene_name": "Bdkrb2", "gene_names_uniprotkb": "Bdkrb2", "gene_names_refseq": "B2BKR; B2BRA; Bdkrb2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LLSSPMLVFRTMKDYREEGH", "down_seq": "VTACVIVYPSRSWEVFTNML", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn212", "evidence": [ { "id": "P25023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25023#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "44", "end_pos": "44" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P25023-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "P25023-1", "length": 396, "uniprot_id": "BKRB2_RAT", "protein_name": "B2 bradykinin receptor", "refseq_ac": "NP_775123", "refseq_name": "B2 bradykinin receptor isoform 2", "gene_name": "Bdkrb2", "gene_names_uniprotkb": "Bdkrb2", "gene_names_refseq": "B2BKR; B2BRA; Bdkrb2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AVVAVFWGPGCHLSTCIEMF", "down_seq": "ITTQALGSAHNGTFSEVNCP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn33", "evidence": [ { "id": "P25023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25023#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "44", "end_pos": "44" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "P25023-1.44.44", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P25023-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "P25023-1", "length": 396, "uniprot_id": "BKRB2_RAT", "protein_name": "B2 bradykinin receptor", "refseq_ac": "NP_775123", "refseq_name": "B2 bradykinin receptor isoform 2", "gene_name": "Bdkrb2", "gene_names_uniprotkb": "Bdkrb2", "gene_names_refseq": "B2BKR; B2BRA; Bdkrb2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HLSTCIEMFNITTQALGSAH", "down_seq": "GTFSEVNCPDTEWWSWLNAI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn44", "evidence": [ { "id": "P25023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25023#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "44", "end_pos": "44" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "P25023-1.33.33", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P25023-1.161.161", "start_pos": 161, "end_pos": 161, "uniprot_canonical_ac": "P25023-1", "length": 396, "uniprot_id": "BKRB2_RAT", "protein_name": "B2 bradykinin receptor", "refseq_ac": "NP_775123", "refseq_name": "B2 bradykinin receptor isoform 2", "gene_name": "Bdkrb2", "gene_names_uniprotkb": "Bdkrb2", "gene_names_refseq": "B2BKR; B2BRA; Bdkrb2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Correlations in palmitoylation and multiple phosphorylation of rat bradykinin B2 receptor in Chinese hamster ovary cells.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Soskic V, Nyakatura E, Roos M, Muller-Esterl W, Godovac-Zimmermann J", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" } ], "reference": [ { "type": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" } ] } ], "crossref": [ { "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MIYMNLYSSICFLMLVSIDR", "down_seq": "LALVKTMSMGRMRGVRWAKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" } ], "site_lbl": "Tyr161" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "44", "end_pos": "44" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25023-1.352.352", "start_pos": 352, "end_pos": 352, "uniprot_canonical_ac": "P25023-1", "length": 396, "uniprot_id": "BKRB2_RAT", "protein_name": "B2 bradykinin receptor", "refseq_ac": "NP_775123", "refseq_name": "B2 bradykinin receptor isoform 2", "gene_name": "Bdkrb2", "gene_names_uniprotkb": "Bdkrb2", "gene_names_refseq": "B2BKR; B2BRA; Bdkrb2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Correlations in palmitoylation and multiple phosphorylation of rat bradykinin B2 receptor in Chinese hamster ovary cells.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Soskic V, Nyakatura E, Roos M, Muller-Esterl W, Godovac-Zimmermann J", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" } ], "reference": [ { "type": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" } ] } ], "crossref": [ { "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LNPLVYVIVGKRFRKKSREV", "down_seq": "QAICRKGGCMGESVQMENSM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" } ], "site_lbl": "Tyr352" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "44", "end_pos": "44" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "P25023-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "P25023-1.371.371", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25023-1.365.365", "start_pos": 365, "end_pos": 365, "uniprot_canonical_ac": "P25023-1", "length": 396, "uniprot_id": "BKRB2_RAT", "protein_name": "B2 bradykinin receptor", "refseq_ac": "NP_775123", "refseq_name": "B2 bradykinin receptor isoform 2", "gene_name": "Bdkrb2", "gene_names_uniprotkb": "Bdkrb2", "gene_names_refseq": "B2BKR; B2BRA; Bdkrb2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Correlations in palmitoylation and multiple phosphorylation of rat bradykinin B2 receptor in Chinese hamster ovary cells.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Soskic V, Nyakatura E, Roos M, Muller-Esterl W, Godovac-Zimmermann J", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" } ], "reference": [ { "type": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" } ] } ], "crossref": [ { "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKKSREVYQAICRKGGCMGE", "down_seq": "VQMENSMGTLRTSISVDRQI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" } ], "site_lbl": "Ser365" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "44", "end_pos": "44" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P25023-1.352.352", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P25023-1.371.371", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P25023-1.374.374", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P25023-1.378.378", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P25023-1.380.380", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25023-1.371.371", "start_pos": 371, "end_pos": 371, "uniprot_canonical_ac": "P25023-1", "length": 396, "uniprot_id": "BKRB2_RAT", "protein_name": "B2 bradykinin receptor", "refseq_ac": "NP_775123", "refseq_name": "B2 bradykinin receptor isoform 2", "gene_name": "Bdkrb2", "gene_names_uniprotkb": "Bdkrb2", "gene_names_refseq": "B2BKR; B2BRA; Bdkrb2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Correlations in palmitoylation and multiple phosphorylation of rat bradykinin B2 receptor in Chinese hamster ovary cells.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Soskic V, Nyakatura E, Roos M, Muller-Esterl W, Godovac-Zimmermann J", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" } ], "reference": [ { "type": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" } ] } ], "crossref": [ { "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VYQAICRKGGCMGESVQMEN", "down_seq": "MGTLRTSISVDRQIHKLQDW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" } ], "site_lbl": "Ser371" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "44", "end_pos": "44" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P25023-1.352.352", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P25023-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P25023-1.374.374", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P25023-1.378.378", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "P25023-1.380.380", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25023-1.374.374", "start_pos": 374, "end_pos": 374, "uniprot_canonical_ac": "P25023-1", "length": 396, "uniprot_id": "BKRB2_RAT", "protein_name": "B2 bradykinin receptor", "refseq_ac": "NP_775123", "refseq_name": "B2 bradykinin receptor isoform 2", "gene_name": "Bdkrb2", "gene_names_uniprotkb": "Bdkrb2", "gene_names_refseq": "B2BKR; B2BRA; Bdkrb2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Correlations in palmitoylation and multiple phosphorylation of rat bradykinin B2 receptor in Chinese hamster ovary cells.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Soskic V, Nyakatura E, Roos M, Muller-Esterl W, Godovac-Zimmermann J", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" } ], "reference": [ { "type": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" } ] } ], "crossref": [ { "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AICRKGGCMGESVQMENSMG", "down_seq": "LRTSISVDRQIHKLQDWAGN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" } ], "site_lbl": "Thr374" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "44", "end_pos": "44" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "P25023-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P25023-1.371.371", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P25023-1.378.378", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "P25023-1.380.380", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25023-1.378.378", "start_pos": 378, "end_pos": 378, "uniprot_canonical_ac": "P25023-1", "length": 396, "uniprot_id": "BKRB2_RAT", "protein_name": "B2 bradykinin receptor", "refseq_ac": "NP_775123", "refseq_name": "B2 bradykinin receptor isoform 2", "gene_name": "Bdkrb2", "gene_names_uniprotkb": "Bdkrb2", "gene_names_refseq": "B2BKR; B2BRA; Bdkrb2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Correlations in palmitoylation and multiple phosphorylation of rat bradykinin B2 receptor in Chinese hamster ovary cells.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Soskic V, Nyakatura E, Roos M, Muller-Esterl W, Godovac-Zimmermann J", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" } ], "reference": [ { "type": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" } ] } ], "crossref": [ { "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KGGCMGESVQMENSMGTLRT", "down_seq": "ISVDRQIHKLQDWAGNKQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK6", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" }, { "database": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" } ], "site_lbl": "Ser378" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "44", "end_pos": "44" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P25023-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P25023-1.371.371", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P25023-1.374.374", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P25023-1.380.380", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P25023-1.380.380", "start_pos": 380, "end_pos": 380, "uniprot_canonical_ac": "P25023-1", "length": 396, "uniprot_id": "BKRB2_RAT", "protein_name": "B2 bradykinin receptor", "refseq_ac": "NP_775123", "refseq_name": "B2 bradykinin receptor isoform 2", "gene_name": "Bdkrb2", "gene_names_uniprotkb": "Bdkrb2", "gene_names_refseq": "B2BKR; B2BRA; Bdkrb2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Correlations in palmitoylation and multiple phosphorylation of rat bradykinin B2 receptor in Chinese hamster ovary cells.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Soskic V, Nyakatura E, Roos M, Muller-Esterl W, Godovac-Zimmermann J", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" } ], "reference": [ { "type": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" } ] } ], "crossref": [ { "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GCMGESVQMENSMGTLRTSI", "down_seq": "VDRQIHKLQDWAGNKQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by GRK6", "evidence": [ { "database": "UniProtKB", "id": "P25023", "url": "https://www.uniprot.org/uniprotkb/P25023" }, { "database": "iPTMnet", "id": "P25023", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25023" }, { "database": "PubMed", "id": "10085087", "url": "https://glygen.org/publication/PubMed/10085087" } ], "site_lbl": "Ser380" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "44", "end_pos": "44" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "365", "end_pos": "365" }, { "start_pos": "371", "end_pos": "371" }, { "start_pos": "374", "end_pos": "374" }, { "start_pos": "378", "end_pos": "378" }, { "start_pos": "380", "end_pos": "380" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P25023-1.365.365", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "P25023-1.371.371", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "P25023-1.374.374", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P25023-1.378.378", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4KMA0-1.330.330", "start_pos": 330, "end_pos": 330, "uniprot_canonical_ac": "Q4KMA0-1", "length": 404, "uniprot_id": "AZI2_RAT", "protein_name": "5-azacytidine-induced protein 2", "refseq_ac": "NP_001020876", "refseq_name": "5-azacytidine-induced protein 2", "gene_name": "Azi2", "gene_names_uniprotkb": "Azi2", "gene_names_refseq": "Azi2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4KMA0", "url": "https://www.uniprot.org/uniprotkb/Q4KMA0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4KMA0", "url": "https://www.uniprot.org/uniprotkb/Q4KMA0" }, { "database": "iPTMnet", "id": "Q4KMA0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KMA0" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4KMA0", "url": "https://www.uniprot.org/uniprotkb/Q4KMA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4KMA0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KMA0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "APPSTLPGDRKAFSDKAVLQ", "down_seq": "WTDNERLTPNDGADFQEHNS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4KMA0", "url": "https://www.uniprot.org/uniprotkb/Q4KMA0" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4KMA0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KMA0" } ], "site_lbl": "Ser330" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4KMA0-1.365.365", "start_pos": 365, "end_pos": 365, "uniprot_canonical_ac": "Q4KMA0-1", "length": 404, "uniprot_id": "AZI2_RAT", "protein_name": "5-azacytidine-induced protein 2", "refseq_ac": "NP_001020876", "refseq_name": "5-azacytidine-induced protein 2", "gene_name": "Azi2", "gene_names_uniprotkb": "Azi2", "gene_names_refseq": "Azi2", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4KMA0", "url": "https://www.uniprot.org/uniprotkb/Q4KMA0" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4KMA0", "url": "https://www.uniprot.org/uniprotkb/Q4KMA0", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FQEHNSYGRNSLEDNSWVFP", "down_seq": "PPKSSETAFGESKSKILPSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4KMA0", "url": "https://www.uniprot.org/uniprotkb/Q4KMA0" } ], "site_lbl": "Ser365" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "365", "end_pos": "365" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P01161-1.128.128", "start_pos": 128, "end_pos": 128, "uniprot_canonical_ac": "P01161-1", "length": 152, "uniprot_id": "ANF_RAT", "protein_name": "Natriuretic peptides A", "refseq_ac": "NP_036744", "refseq_name": "natriuretic peptides A precursor", "gene_name": "Nppa", "gene_names_uniprotkb": "Nppa", "gene_names_refseq": "ANF; ANP; CDD; Nppa; Pnd; RATANF", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P01161", "url": "https://www.uniprot.org/uniprotkb/P01161" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P01161", "url": "https://www.uniprot.org/uniprotkb/P01161", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ALLKSKLRALLAGPRSLRRS", "down_seq": "CFGGRIDRIGAQSGLGCNSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P01161", "url": "https://www.uniprot.org/uniprotkb/P01161" } ], "site_lbl": "Ser128" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "128", "end_pos": "128" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P05370-1.490.490", "start_pos": 490, "end_pos": 490, "uniprot_canonical_ac": "P05370-1", "length": 515, "uniprot_id": "G6PD_RAT", "protein_name": "Glucose-6-phosphate 1-dehydrogenase", "refseq_ac": "NP_058702", "refseq_name": "glucose-6-phosphate 1-dehydrogenase", "gene_name": "G6pdx", "gene_names_uniprotkb": "G6pdx; G6pd", "gene_names_refseq": "G6pdx; G6pd", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P05370", "url": "https://www.uniprot.org/uniprotkb/P05370" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HKIDREKPQPIPYVYGSRGP", "down_seq": "EADELMKRVGFQYEGTYKWV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr490", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "P05370-1.503.503", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P05370-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P05370-1", "length": 515, "uniprot_id": "G6PD_RAT", "protein_name": "Glucose-6-phosphate 1-dehydrogenase", "refseq_ac": "NP_058702", "refseq_name": "glucose-6-phosphate 1-dehydrogenase", "gene_name": "G6pdx", "gene_names_uniprotkb": "G6pdx; G6pd", "gene_names_refseq": "G6pdx; G6pd", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P05370", "url": "https://www.uniprot.org/uniprotkb/P05370" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Hypoxic acclimation improves cardiac redox homeostasis and protects heart against ischemia-reperfusion injury through upregulation of O-GlcNAcylation.", "journal": "Redox biology", "date": "2021", "authors": "Ou W, Liang Y, Qin Y, Wu W, Xie M, Zhang Y, Zhang Y, Ji L, Yu H, Li T", "evidence": [ { "database": "O-GlcNAc Database", "id": "P05370", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P05370" } ], "reference": [ { "type": "PubMed", "id": "33964586", "url": "https://glygen.org/publication/PubMed/33964586" } ] } ], "crossref": [ { "id": "33964586", "url": "https://glygen.org/publication/PubMed/33964586", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P05370", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P05370", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "33964586", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33964586" }, { "id": "P05370", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P05370" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "P05370-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P05370-1.10.10", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P05370-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "P05370-1", "length": 515, "uniprot_id": "G6PD_RAT", "protein_name": "Glucose-6-phosphate 1-dehydrogenase", "refseq_ac": "NP_058702", "refseq_name": "glucose-6-phosphate 1-dehydrogenase", "gene_name": "G6pdx", "gene_names_uniprotkb": "G6pdx; G6pd", "gene_names_refseq": "G6pdx; G6pd", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P05370", "url": "https://www.uniprot.org/uniprotkb/P05370" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P05370", "url": "https://www.uniprot.org/uniprotkb/P05370", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAEQVALSR", "down_seq": "QVCGILREELYQGDAFHQAD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P05370", "url": "https://www.uniprot.org/uniprotkb/P05370" } ], "site_lbl": "Thr10" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "P05370-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P05370-1.8.8", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P05370-1.503.503", "start_pos": 503, "end_pos": 503, "uniprot_canonical_ac": "P05370-1", "length": 515, "uniprot_id": "G6PD_RAT", "protein_name": "Glucose-6-phosphate 1-dehydrogenase", "refseq_ac": "NP_058702", "refseq_name": "glucose-6-phosphate 1-dehydrogenase", "gene_name": "G6pdx", "gene_names_uniprotkb": "G6pdx; G6pd", "gene_names_refseq": "G6pdx; G6pd", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P05370", "url": "https://www.uniprot.org/uniprotkb/P05370" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P05370", "url": "https://www.uniprot.org/uniprotkb/P05370", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VYGSRGPTEADELMKRVGFQ", "down_seq": "EGTYKWVNPHKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P05370", "url": "https://www.uniprot.org/uniprotkb/P05370" } ], "site_lbl": "Tyr503" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P05370-1.490.490", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P05370-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "P05370-1", "length": 515, "uniprot_id": "G6PD_RAT", "protein_name": "Glucose-6-phosphate 1-dehydrogenase", "refseq_ac": "NP_058702", "refseq_name": "glucose-6-phosphate 1-dehydrogenase", "gene_name": "G6pdx", "gene_names_uniprotkb": "G6pdx; G6pd", "gene_names_refseq": "G6pdx; G6pd", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P05370", "url": "https://www.uniprot.org/uniprotkb/P05370" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "P05370", "url": "https://www.uniprot.org/uniprotkb/P05370", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAEQVAL", "down_seq": "RTQVCGILREELYQGDAFHQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P05370", "url": "https://www.uniprot.org/uniprotkb/P05370" } ], "site_lbl": "Ser8" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "490", "end_pos": "490" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "503", "end_pos": "503" }, { "start_pos": "8", "end_pos": "8" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "P05370-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P05370-1.10.10", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P23928-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "P23928-1", "length": 175, "uniprot_id": "CRYAB_RAT", "protein_name": "Alpha-crystallin B chain", "refseq_ac": "NP_037067", "refseq_name": "alpha-crystallin B chain", "gene_name": "Cryab", "gene_names_uniprotkb": "Cryab", "gene_names_refseq": "AACRYA; Cryab", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Increasing O-GlcNAcylation level on organ culture of soleus modulates the calcium activation parameters of muscle fibers.", "journal": "PloS one", "date": "2012", "authors": "Cieniewski-Bernard C, Montel V, Berthoin S, Bastide B", "evidence": [ { "database": "O-GlcNAc Database", "id": "P23928", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P23928" } ], "reference": [ { "type": "PubMed", "id": "23110217", "url": "https://glygen.org/publication/PubMed/23110217" } ] }, { "title": "Identification of O-linked N-acetylglucosamine proteins in rat skeletal muscle using two-dimensional gel electrophoresis and mass spectrometry.", "journal": "Molecular & cellular proteomics : MCP", "date": "2004", "authors": "Cieniewski-Bernard C, Bastide B, Lefebvre T, Lemoine J, Mounier Y, Michalski JC", "evidence": [ { "database": "O-GlcNAc Database", "id": "P23928", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P23928" } ], "reference": [ { "type": "PubMed", "id": "14985449", "url": "https://glygen.org/publication/PubMed/14985449" } ] }, { "title": "An O-GlcNAcylomic Approach Reveals ACLY as a Potential Target in Sepsis in the Young Rat.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Denis M, Dupas T, Persello A, Dontaine J, Bultot L, Betus C, Pele T, Dhot J, Erraud A, Maillard A, Montnach J, Leroux AA, Bigot-Corbel E, Vertommen D, Riviere M, Lebreton J, Tessier A, Waard M, Bertrand L, Rozec B, Lauzier B", "evidence": [ { "database": "O-GlcNAc Database", "id": "P23928", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P23928" } ], "reference": [ { "type": "PubMed", "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162" } ] }, { "title": "O-GlcNAcylation of alphaB-crystallin regulates its stress-induced translocation and cytoprotection.", "journal": "Molecular and cellular biochemistry", "date": "2013", "authors": "Krishnamoorthy V, Donofrio AJ, Martin JL", "evidence": [ { "database": "O-GlcNAc Database", "id": "P23928", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P23928" }, { "database": "O-GlcNAc Atlas", "id": "P23928", "url": "https://oglcnac.org/atlas/detail/P23928" } ], "reference": [ { "type": "PubMed", "id": "23543138", "url": "https://glygen.org/publication/PubMed/23543138" } ] }, { "title": "Dynamic O-GlcNAcylation of the small heat shock protein alpha B-crystallin.", "journal": "Biochemistry", "date": "1996", "authors": "Roquemore EP, Chevrier MR, Cotter RJ, Hart GW", "evidence": [ { "database": "UniProtKB", "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928#ptm_processing" }, { "database": "UniProtKB", "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928" }, { "database": "O-GlcNAc Database", "id": "P23928", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P23928" }, { "database": "O-GlcNAc Atlas", "id": "P23928", "url": "https://oglcnac.org/atlas/detail/P23928" }, { "database": "RefSeq", "id": "NP_037067", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_037067" }, { "database": "GlyGen", "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493" } ], "reference": [ { "type": "PubMed", "id": "8639509", "url": "https://glygen.org/publication/PubMed/8639509" } ] } ], "crossref": [ { "id": "23110217", "url": "https://glygen.org/publication/PubMed/23110217", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P23928", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P23928", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "14985449", "url": "https://glygen.org/publication/PubMed/14985449", "database": "PubMed", "categories": [ "Other" ] }, { "id": "34502162", "url": "https://glygen.org/publication/PubMed/34502162", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23543138", "url": "https://glygen.org/publication/PubMed/23543138", "database": "PubMed", "categories": [ "Other" ] }, { "id": "8639509", "url": "https://glygen.org/publication/PubMed/8639509", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P23928", "url": "https://oglcnac.org/atlas/detail/P23928", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "GLY_000493", "url": "https://data.glygen.org/GLY_000493", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KQASGPERTIPITREEKPAV", "down_seq": "AAPKK", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr170", "evidence": [ { "id": "23110217", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23110217" }, { "id": "P23928", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P23928" }, { "id": "14985449", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/14985449" }, { "id": "34502162", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34502162" }, { "id": "23543138", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23543138" }, { "id": "8639509", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/8639509" }, { "id": "P23928", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P23928" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GlcNAc) threonine;O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr170", "evidence": [ { "id": "P23928", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P23928#ptm_processing" }, { "id": "8639509", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/8639509" }, { "id": "GLY_000493", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000493" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "170", "end_pos": "170" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "19", "end_pos": "19" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P23928-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "P23928-1", "length": 175, "uniprot_id": "CRYAB_RAT", "protein_name": "Alpha-crystallin B chain", "refseq_ac": "NP_037067", "refseq_name": "alpha-crystallin B chain", "gene_name": "Cryab", "gene_names_uniprotkb": "Cryab", "gene_names_refseq": "AACRYA; Cryab", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Vertebrate lens alpha-crystallins are modified by O-linked N-acetylglucosamine.", "journal": "The Journal of biological chemistry", "date": "1992", "authors": "Roquemore EP, Dell A, Morris HR, Panico M, Reason AJ, Savoy LA, Wistow GJ, Zigler JS Jr, Earles BJ, Hart GW", "evidence": [ { "database": "GlyConnect", "id": "34", "url": "https://glyconnect.expasy.org/browser/proteins/34" } ], "reference": [ { "type": "PubMed", "id": "1730617", "url": "https://glygen.org/publication/PubMed/1730617" } ] } ], "crossref": [ { "id": "1730617", "url": "https://glygen.org/publication/PubMed/1730617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "34", "url": "https://glyconnect.expasy.org/browser/proteins/34", "database": "GlyConnect", "categories": [ "Glycomics", "Glycoproteomics" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "evidence": [ { "id": "1730617", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/1730617" }, { "id": "34", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/34" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "170", "end_pos": "170" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "19", "end_pos": "19" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "P23928-1.19.19", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P23928-1.19.19", "start_pos": 19, "end_pos": 19, "uniprot_canonical_ac": "P23928-1", "length": 175, "uniprot_id": "CRYAB_RAT", "protein_name": "Alpha-crystallin B chain", "refseq_ac": "NP_037067", "refseq_name": "alpha-crystallin B chain", "gene_name": "Cryab", "gene_names_uniprotkb": "Cryab", "gene_names_refseq": "AACRYA; Cryab", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "AlphaB-crystallin in the rat lens is phosphorylated at an early post-natal age.", "journal": "FEBS letters", "date": "1999", "authors": "Ito H, Iida K, Kamei K, Iwamoto I, Inaguma Y, Kato K", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "10100856", "url": "https://glygen.org/publication/PubMed/10100856" } ] }, { "title": "Phosphorylation of Ser45 and Ser59 of \u03b1B-crystallin and p38/extracellular regulated kinase activity determine \u03b1B-crystallin-mediated protection of rat brain astrocytes from C2-ceramide- and staurosporine-induced cell death.", "journal": "Journal of neurochemistry", "date": "2011-08", "authors": "Li Rongyu, Reiser Georg", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "21615407", "url": "https://glygen.org/publication/PubMed/21615407" } ] }, { "title": "Phosphorylation of alphaB-crystallin in response to various types of stress.", "journal": "The Journal of biological chemistry", "date": "1997", "authors": "Ito H, Okamoto K, Nakayama H, Isobe T, Kato K", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "9368070", "url": "https://glygen.org/publication/PubMed/9368070" } ] } ], "crossref": [ { "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "10100856", "url": "https://glygen.org/publication/PubMed/10100856", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21615407", "url": "https://glygen.org/publication/PubMed/21615407", "database": "PubMed", "categories": [ "Other" ] }, { "id": "9368070", "url": "https://glygen.org/publication/PubMed/9368070", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDIAIHHPWIRRPFFPFH", "down_seq": "PSRLFDQFFGEHLLESDLFS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928" }, { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" }, { "database": "PubMed", "id": "10100856", "url": "https://glygen.org/publication/PubMed/10100856" }, { "database": "PubMed", "id": "21615407", "url": "https://glygen.org/publication/PubMed/21615407" }, { "database": "PubMed", "id": "9368070", "url": "https://glygen.org/publication/PubMed/9368070" } ], "site_lbl": "Ser19" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "170", "end_pos": "170" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "19", "end_pos": "19" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "P23928-1.0.0", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P23928-1.45.45", "start_pos": 45, "end_pos": 45, "uniprot_canonical_ac": "P23928-1", "length": 175, "uniprot_id": "CRYAB_RAT", "protein_name": "Alpha-crystallin B chain", "refseq_ac": "NP_037067", "refseq_name": "alpha-crystallin B chain", "gene_name": "Cryab", "gene_names_uniprotkb": "Cryab", "gene_names_refseq": "AACRYA; Cryab", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "AlphaB-crystallin in the rat lens is phosphorylated at an early post-natal age.", "journal": "FEBS letters", "date": "1999", "authors": "Ito H, Iida K, Kamei K, Iwamoto I, Inaguma Y, Kato K", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "10100856", "url": "https://glygen.org/publication/PubMed/10100856" } ] }, { "title": "Phosphorylation of Ser45 and Ser59 of \u03b1B-crystallin and p38/extracellular regulated kinase activity determine \u03b1B-crystallin-mediated protection of rat brain astrocytes from C2-ceramide- and staurosporine-induced cell death.", "journal": "Journal of neurochemistry", "date": "2011-08", "authors": "Li Rongyu, Reiser Georg", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "21615407", "url": "https://glygen.org/publication/PubMed/21615407" } ] }, { "title": "Expression and induction of small heat shock proteins in rat heart under chronic hyperglycemic conditions.", "journal": "Archives of biochemistry and biophysics", "date": "2014-09-15", "authors": "Reddy V Sudhakar, Kumar Ch Uday, Raghu G, Reddy G Bhanuprakash", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "24950024", "url": "https://glygen.org/publication/PubMed/24950024" } ] }, { "title": "Phosphorylation of alphaB-crystallin in response to various types of stress.", "journal": "The Journal of biological chemistry", "date": "1997", "authors": "Ito H, Okamoto K, Nakayama H, Isobe T, Kato K", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "9368070", "url": "https://glygen.org/publication/PubMed/9368070" } ] } ], "crossref": [ { "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "10100856", "url": "https://glygen.org/publication/PubMed/10100856", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21615407", "url": "https://glygen.org/publication/PubMed/21615407", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24950024", "url": "https://glygen.org/publication/PubMed/24950024", "database": "PubMed", "categories": [ "Other" ] }, { "id": "9368070", "url": "https://glygen.org/publication/PubMed/9368070", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DQFFGEHLLESDLFSTATSL", "down_seq": "PFYLRPPSFLRAPSWIDTGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928" }, { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" }, { "database": "PubMed", "id": "10100856", "url": "https://glygen.org/publication/PubMed/10100856" }, { "database": "PubMed", "id": "21615407", "url": "https://glygen.org/publication/PubMed/21615407" }, { "database": "PubMed", "id": "24950024", "url": "https://glygen.org/publication/PubMed/24950024" }, { "database": "PubMed", "id": "9368070", "url": "https://glygen.org/publication/PubMed/9368070" } ], "site_lbl": "Ser45" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "170", "end_pos": "170" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "19", "end_pos": "19" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "P23928-1.59.59", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P23928-1.59.59", "start_pos": 59, "end_pos": 59, "uniprot_canonical_ac": "P23928-1", "length": 175, "uniprot_id": "CRYAB_RAT", "protein_name": "Alpha-crystallin B chain", "refseq_ac": "NP_037067", "refseq_name": "alpha-crystallin B chain", "gene_name": "Cryab", "gene_names_uniprotkb": "Cryab", "gene_names_refseq": "AACRYA; Cryab", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928" }, { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] }, { "title": "Quantitative phosphoproteomics of vasopressin-sensitive renal cells: regulation of aquaporin-2 phosphorylation at two sites.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Hoffert JD, Pisitkun T, Wang G, Shen RF, Knepper MA", "evidence": [ { "database": "UniProtKB", "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928" }, { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" } ] }, { "title": "AlphaB-crystallin in the rat lens is phosphorylated at an early post-natal age.", "journal": "FEBS letters", "date": "1999", "authors": "Ito H, Iida K, Kamei K, Iwamoto I, Inaguma Y, Kato K", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "10100856", "url": "https://glygen.org/publication/PubMed/10100856" } ] }, { "title": "Innervation-dependent phosphorylation and accumulation of alphaB-crystallin and Hsp27 as insoluble complexes in disused muscle.", "journal": "FASEB journal : official publication of the Federation of American Societies for Experimental Biology", "date": "2002", "authors": "Kato K, Ito H, Kamei K, Iwamoto I, Inaguma Y", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "12205038", "url": "https://glygen.org/publication/PubMed/12205038" } ] }, { "title": "Phosphorylation of Ser45 and Ser59 of \u03b1B-crystallin and p38/extracellular regulated kinase activity determine \u03b1B-crystallin-mediated protection of rat brain astrocytes from C2-ceramide- and staurosporine-induced cell death.", "journal": "Journal of neurochemistry", "date": "2011-08", "authors": "Li Rongyu, Reiser Georg", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "21615407", "url": "https://glygen.org/publication/PubMed/21615407" } ] }, { "title": "Expression and induction of small heat shock proteins in rat heart under chronic hyperglycemic conditions.", "journal": "Archives of biochemistry and biophysics", "date": "2014-09-15", "authors": "Reddy V Sudhakar, Kumar Ch Uday, Raghu G, Reddy G Bhanuprakash", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "24950024", "url": "https://glygen.org/publication/PubMed/24950024" } ] }, { "title": "Hyperglycemia induced expression, phosphorylation, and translocation of \u03b1B-crystallin in rat skeletal muscle.", "journal": "IUBMB life", "date": "2015-04", "authors": "Reddy Vadde Sudhakar, Jakhotia Sneha, Reddy P Yadagiri, Reddy G Bhanuprakash", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "25900025", "url": "https://glygen.org/publication/PubMed/25900025" } ] }, { "title": "Phosphorylation of alphaB-crystallin in response to various types of stress.", "journal": "The Journal of biological chemistry", "date": "1997", "authors": "Ito H, Okamoto K, Nakayama H, Isobe T, Kato K", "evidence": [ { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" } ], "reference": [ { "type": "PubMed", "id": "9368070", "url": "https://glygen.org/publication/PubMed/9368070" } ] } ], "crossref": [ { "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "10100856", "url": "https://glygen.org/publication/PubMed/10100856", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12205038", "url": "https://glygen.org/publication/PubMed/12205038", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21615407", "url": "https://glygen.org/publication/PubMed/21615407", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24950024", "url": "https://glygen.org/publication/PubMed/24950024", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25900025", "url": "https://glygen.org/publication/PubMed/25900025", "database": "PubMed", "categories": [ "Other" ] }, { "id": "9368070", "url": "https://glygen.org/publication/PubMed/9368070", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STATSLSPFYLRPPSFLRAP", "down_seq": "WIDTGLSEMRMEKDRFSVNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P23928", "url": "https://www.uniprot.org/uniprotkb/P23928" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "PubMed", "id": "16641100", "url": "https://glygen.org/publication/PubMed/16641100" }, { "database": "iPTMnet", "id": "P23928", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P23928" }, { "database": "PubMed", "id": "10100856", "url": "https://glygen.org/publication/PubMed/10100856" }, { "database": "PubMed", "id": "12205038", "url": "https://glygen.org/publication/PubMed/12205038" }, { "database": "PubMed", "id": "21615407", "url": "https://glygen.org/publication/PubMed/21615407" }, { "database": "PubMed", "id": "24950024", "url": "https://glygen.org/publication/PubMed/24950024" }, { "database": "PubMed", "id": "25900025", "url": "https://glygen.org/publication/PubMed/25900025" }, { "database": "PubMed", "id": "9368070", "url": "https://glygen.org/publication/PubMed/9368070" } ], "site_lbl": "Ser59" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "170", "end_pos": "170" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "19", "end_pos": "19" }, { "start_pos": "45", "end_pos": "45" }, { "start_pos": "59", "end_pos": "59" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "P23928-1.45.45", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q03351-1.133.133", "start_pos": 133, "end_pos": 133, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SGLRNIQPRAFAKNPHLRYI", "down_seq": "LSSNRLTTLSWQLFQTLSLR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn133", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.163.163", "start_pos": 163, "end_pos": 163, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SWQLFQTLSLRELRLEQNFF", "down_seq": "CSCDIRWMQLWQEQGEARLD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn163", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.203.203", "start_pos": 203, "end_pos": 203, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DSQSLYCISADGSQLPLFRM", "down_seq": "ISQCDLPEISVSHVNLTVRE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn203", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q03351-1.218.218", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.218.218", "start_pos": 218, "end_pos": 218, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PLFRMNISQCDLPEISVSHV", "down_seq": "LTVREGDNAVITCNGSGSPL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn218", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q03351-1.203.203", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q03351-1.232.232", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ISVSHVNLTVREGDNAVITC", "down_seq": "GSGSPLPDVDWIVTGLQSIN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn232", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q03351-1.218.218", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.259.259", "start_pos": 259, "end_pos": 259, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PDVDWIVTGLQSINTHQTNL", "down_seq": "WTNVHAINLTLVNVTSEDNG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn259", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q03351-1.267.267", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q03351-1.272.272", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.267.267", "start_pos": 267, "end_pos": 267, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GLQSINTHQTNLNWTNVHAI", "down_seq": "LTLVNVTSEDNGFTLTCIAE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn267", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q03351-1.259.259", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q03351-1.272.272", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.272.272", "start_pos": 272, "end_pos": 272, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NTHQTNLNWTNVHAINLTLV", "down_seq": "VTSEDNGFTLTCIAENVVGM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn272", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q03351-1.259.259", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q03351-1.267.267", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.294.294", "start_pos": 294, "end_pos": 294, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TSEDNGFTLTCIAENVVGMS", "down_seq": "ASVALTVYYPPRVVSLVEPE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn294", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.375.375", "start_pos": 375, "end_pos": 375, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EGEVSEGCLLFNKPTHYNNG", "down_seq": "YTLIAKNALGTANQTINGHF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn375", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q03351-1.388.388", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.388.388", "start_pos": 388, "end_pos": 388, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PTHYNNGNYTLIAKNALGTA", "down_seq": "QTINGHFLKEPFPESTDFFD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn388", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q03351-1.375.375", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.416.416", "start_pos": 416, "end_pos": 416, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LKEPFPESTDFFDFESDASP", "down_seq": "PPITVTHKPEEDTFGVSIAV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr416", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.68.68", "start_pos": 68, "end_pos": 68, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PDDGNLFPLLEGQDSGNSNG", "down_seq": "ASINITDISRNITSIHIENW", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn68", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q03351-1.72.72", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q03351-1.79.79", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NLFPLLEGQDSGNSNGNASI", "down_seq": "ITDISRNITSIHIENWRGLH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn72", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q03351-1.68.68", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q03351-1.79.79", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GQDSGNSNGNASINITDISR", "down_seq": "ITSIHIENWRGLHTLNAVDM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn79", "evidence": [ { "id": "Q03351", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03351#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q03351-1.68.68", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q03351-1.72.72", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Neuronal activity-driven O-GlcNAcylation promotes mitochondrial plasticity.", "journal": "Developmental cell", "date": "2024-08-19", "authors": "Yu Seungyoon B, Wang Haoming, Sanchez Richard G, Carlson Natasha M, Nguyen Khanh, Zhang Andrew, Papich Zachary D, Abushawish Ahmed A, Whiddon Zachary, Matysik Weronika, Zhang Jie, Whisenant Thomas C, Ghassemian Majid, Koberstein John N, Stewart Melissa L, Myers Samuel A, Pekkurnaz Gulcin", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q03351", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q03351" } ], "reference": [ { "type": "PubMed", "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836" } ] } ], "crossref": [ { "id": "38843836", "url": "https://glygen.org/publication/PubMed/38843836", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q03351", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q03351", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "38843836", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/38843836" }, { "id": "Q03351", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q03351" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q03351-1.493.493", "start_pos": 493, "end_pos": 493, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GEEDSASPLHHINHGITTPS", "down_seq": "LDAGPDTVVIGMTRIPVIEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "site_lbl": "Ser493" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.516.516", "start_pos": 516, "end_pos": 516, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "AGPDTVVIGMTRIPVIENPQ", "down_seq": "FRQGHNCHKPDTYVQHIKRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "site_lbl": "Tyr516" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.705.705", "start_pos": 705, "end_pos": 705, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "CLVGANLLVKIGDFGMSRDV", "down_seq": "STDYYREGPYQKGPFSVSWQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "site_lbl": "Tyr705" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q03351-1.709.709", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q03351-1.710.710", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.709.709", "start_pos": 709, "end_pos": 709, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ANLLVKIGDFGMSRDVYSTD", "down_seq": "YREGPYQKGPFSVSWQQQRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "site_lbl": "Tyr709" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q03351-1.705.705", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q03351-1.710.710", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.710.710", "start_pos": 710, "end_pos": 710, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "NLLVKIGDFGMSRDVYSTDY", "down_seq": "REGPYQKGPFSVSWQQQRLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "site_lbl": "Tyr710" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q03351-1.705.705", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q03351-1.709.709", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q03351-1.859.859", "start_pos": 859, "end_pos": 859, "uniprot_canonical_ac": "Q03351-1", "length": 864, "uniprot_id": "NTRK3_RAT", "protein_name": "NT-3 growth factor receptor", "refseq_ac": "NP_001257584", "refseq_name": "NT-3 growth factor receptor isoform 2 precursor", "gene_name": "Ntrk3", "gene_names_uniprotkb": "Ntrk3; Trkc", "gene_names_refseq": "Ntrk3; trkC", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "RLNIKEIYKILHALGKATPI", "down_seq": "LDILG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "Q03351", "url": "https://www.uniprot.org/uniprotkb/Q03351" } ], "site_lbl": "Tyr859" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "218", "end_pos": "218" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "272", "end_pos": "272" }, { "start_pos": "294", "end_pos": "294" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "416", "end_pos": "416" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "72", "end_pos": "72" }, { "start_pos": "79", "end_pos": "79" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "493", "end_pos": "493" }, { "start_pos": "516", "end_pos": "516" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "709", "end_pos": "709" }, { "start_pos": "710", "end_pos": "710" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4KM77-1.320.320", "start_pos": 320, "end_pos": 320, "uniprot_canonical_ac": "Q4KM77-1", "length": 340, "uniprot_id": "EI24_RAT", "protein_name": "Etoposide-induced protein 2.4 homolog", "refseq_ac": "NP_001020831", "refseq_name": "etoposide-induced protein 2.4 homolog", "gene_name": "Ei24", "gene_names_uniprotkb": "Ei24", "gene_names_refseq": "Ei24", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSNRLFHKTVYLQSALSSSS", "down_seq": "AEKFPSPHPSPAKLKAAAGH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" } ], "site_lbl": "Ser320" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q4KM77-1.326.326", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q4KM77-1.330.330", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4KM77-1.326.326", "start_pos": 326, "end_pos": 326, "uniprot_canonical_ac": "Q4KM77-1", "length": 340, "uniprot_id": "EI24_RAT", "protein_name": "Etoposide-induced protein 2.4 homolog", "refseq_ac": "NP_001020831", "refseq_name": "etoposide-induced protein 2.4 homolog", "gene_name": "Ei24", "gene_names_uniprotkb": "Ei24", "gene_names_refseq": "Ei24", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" }, { "database": "iPTMnet", "id": "Q4KM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KM77" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4KM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KM77", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HKTVYLQSALSSSSSAEKFP", "down_seq": "PHPSPAKLKAAAGH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4KM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KM77" } ], "site_lbl": "Ser326" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q4KM77-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q4KM77-1.330.330", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4KM77-1.330.330", "start_pos": 330, "end_pos": 330, "uniprot_canonical_ac": "Q4KM77-1", "length": 340, "uniprot_id": "EI24_RAT", "protein_name": "Etoposide-induced protein 2.4 homolog", "refseq_ac": "NP_001020831", "refseq_name": "etoposide-induced protein 2.4 homolog", "gene_name": "Ei24", "gene_names_uniprotkb": "Ei24", "gene_names_refseq": "Ei24", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" }, { "database": "iPTMnet", "id": "Q4KM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KM77" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4KM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KM77", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YLQSALSSSSSAEKFPSPHP", "down_seq": "PAKLKAAAGH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4KM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KM77" } ], "site_lbl": "Ser330" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q4KM77-1.320.320", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q4KM77-1.326.326", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4KM77-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "Q4KM77-1", "length": 340, "uniprot_id": "EI24_RAT", "protein_name": "Etoposide-induced protein 2.4 homolog", "refseq_ac": "NP_001020831", "refseq_name": "etoposide-induced protein 2.4 homolog", "gene_name": "Ei24", "gene_names_uniprotkb": "Ei24", "gene_names_refseq": "Ei24", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" }, { "database": "iPTMnet", "id": "Q4KM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KM77" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4KM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KM77", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISKLDARIQQKREEQRRRRA", "down_seq": "SLLAQRRAQSVERKQESEPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4KM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KM77" } ], "site_lbl": "Ser46" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q4KM77-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q4KM77-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4KM77-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "Q4KM77-1", "length": 340, "uniprot_id": "EI24_RAT", "protein_name": "Etoposide-induced protein 2.4 homolog", "refseq_ac": "NP_001020831", "refseq_name": "etoposide-induced protein 2.4 homolog", "gene_name": "Ei24", "gene_names_uniprotkb": "Ei24", "gene_names_refseq": "Ei24", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" }, { "database": "iPTMnet", "id": "Q4KM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KM77" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q4KM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KM77", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKLDARIQQKREEQRRRRAS", "down_seq": "LLAQRRAQSVERKQESEPRI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q4KM77", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q4KM77" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q4KM77-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q4KM77-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4KM77-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "Q4KM77-1", "length": 340, "uniprot_id": "EI24_RAT", "protein_name": "Etoposide-induced protein 2.4 homolog", "refseq_ac": "NP_001020831", "refseq_name": "etoposide-induced protein 2.4 homolog", "gene_name": "Ei24", "gene_names_uniprotkb": "Ei24", "gene_names_refseq": "Ei24", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KREEQRRRRASSLLAQRRAQ", "down_seq": "VERKQESEPRIVSRIFQCCA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q4KM77", "url": "https://www.uniprot.org/uniprotkb/Q4KM77" } ], "site_lbl": "Ser56" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "320", "end_pos": "320" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "330", "end_pos": "330" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "56", "end_pos": "56" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q4KM77-1.46.46", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q4KM77-1.47.47", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62894-1.376.376", "start_pos": 376, "end_pos": 376, "uniprot_canonical_ac": "Q62894-1", "length": 562, "uniprot_id": "ECM1_RAT", "protein_name": "Extracellular matrix protein 1", "refseq_ac": "NP_446334", "refseq_name": "extracellular matrix protein 1 precursor", "gene_name": "Ecm1", "gene_names_uniprotkb": "Ecm1", "gene_names_refseq": "Ecm1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62894", "url": "https://www.uniprot.org/uniprotkb/Q62894" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62894", "url": "https://www.uniprot.org/uniprotkb/Q62894", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QLQALTRLETEFQRCCRQGH", "down_seq": "HTCTWKAWEDTLDGYCDREL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn376", "evidence": [ { "id": "Q62894", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q62894#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "376", "end_pos": "376" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "538", "end_pos": "538" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "559", "end_pos": "559" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62894-1.466.466", "start_pos": 466, "end_pos": 466, "uniprot_canonical_ac": "Q62894-1", "length": 562, "uniprot_id": "ECM1_RAT", "protein_name": "Extracellular matrix protein 1", "refseq_ac": "NP_446334", "refseq_name": "extracellular matrix protein 1 precursor", "gene_name": "Ecm1", "gene_names_uniprotkb": "Ecm1", "gene_names_refseq": "Ecm1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62894", "url": "https://www.uniprot.org/uniprotkb/Q62894" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62894", "url": "https://www.uniprot.org/uniprotkb/Q62894", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HLCGNGRVLSKHKQIPGLIQ", "down_seq": "MTVRCCELPYPEQACCGEEE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn466", "evidence": [ { "id": "Q62894", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q62894#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "376", "end_pos": "376" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "538", "end_pos": "538" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "559", "end_pos": "559" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62894-1.538.538", "start_pos": 538, "end_pos": 538, "uniprot_canonical_ac": "Q62894-1", "length": 562, "uniprot_id": "ECM1_RAT", "protein_name": "Extracellular matrix protein 1", "refseq_ac": "NP_446334", "refseq_name": "extracellular matrix protein 1 precursor", "gene_name": "Ecm1", "gene_names_uniprotkb": "Ecm1", "gene_names_refseq": "Ecm1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62894", "url": "https://www.uniprot.org/uniprotkb/Q62894" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q62894", "url": "https://www.uniprot.org/uniprotkb/Q62894", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ANCFNTNYLRNVALVAGDTG", "down_seq": "ATGLGQQGPTGGTNVGPAPG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn538", "evidence": [ { "id": "Q62894", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q62894#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "376", "end_pos": "376" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "538", "end_pos": "538" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "559", "end_pos": "559" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q62894-1.559.559", "start_pos": 559, "end_pos": 559, "uniprot_canonical_ac": "Q62894-1", "length": 562, "uniprot_id": "ECM1_RAT", "protein_name": "Extracellular matrix protein 1", "refseq_ac": "NP_446334", "refseq_name": "extracellular matrix protein 1 precursor", "gene_name": "Ecm1", "gene_names_uniprotkb": "Ecm1", "gene_names_refseq": "Ecm1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q62894", "url": "https://www.uniprot.org/uniprotkb/Q62894" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q62894", "url": "https://www.uniprot.org/uniprotkb/Q62894" }, { "database": "iPTMnet", "id": "Q62894", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62894" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q62894", "url": "https://www.uniprot.org/uniprotkb/Q62894", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q62894", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62894", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATGLGQQGPTGGTNVGPAPG", "down_seq": "KEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q62894", "url": "https://www.uniprot.org/uniprotkb/Q62894" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q62894", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q62894" } ], "site_lbl": "Ser559" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "376", "end_pos": "376" }, { "start_pos": "466", "end_pos": "466" }, { "start_pos": "538", "end_pos": "538" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "559", "end_pos": "559" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63276-1.278.278", "start_pos": 278, "end_pos": 278, "uniprot_canonical_ac": "Q63276-1", "length": 420, "uniprot_id": "BAAT_RAT", "protein_name": "Bile acid-CoA:amino acid N-acyltransferase", "refseq_ac": "NP_058996", "refseq_name": "bile acid-CoA:amino acid N-acyltransferase", "gene_name": "Baat", "gene_names_uniprotkb": "Baat", "gene_names_refseq": "Baat; kan-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63276", "url": "https://www.uniprot.org/uniprotkb/Q63276" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "GLY_001157", "url": "https://data.glygen.org/GLY_001157", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NGPNFVSSNPHVYRGKVFQP", "down_seq": "PCSEEFVTTNALGLVEFYRT", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr278", "evidence": [ { "id": "GLY_001157", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001157" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "418", "end_pos": "418" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q63276-1.125.125", "start_pos": 125, "end_pos": 125, "uniprot_canonical_ac": "Q63276-1", "length": 420, "uniprot_id": "BAAT_RAT", "protein_name": "Bile acid-CoA:amino acid N-acyltransferase", "refseq_ac": "NP_058996", "refseq_name": "bile acid-CoA:amino acid N-acyltransferase", "gene_name": "Baat", "gene_names_uniprotkb": "Baat", "gene_names_refseq": "Baat; kan-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63276", "url": "https://www.uniprot.org/uniprotkb/Q63276" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63276", "url": "https://www.uniprot.org/uniprotkb/Q63276" }, { "database": "iPTMnet", "id": "Q63276", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63276" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63276", "url": "https://www.uniprot.org/uniprotkb/Q63276", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63276", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63276", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IKLCHPYFPVEGKVISSSLD", "down_seq": "LILERWYVAPGVTRIHVKEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63276", "url": "https://www.uniprot.org/uniprotkb/Q63276" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63276", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63276" } ], "site_lbl": "Ser125" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "418", "end_pos": "418" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q63276-1.418.418", "start_pos": 418, "end_pos": 418, "uniprot_canonical_ac": "Q63276-1", "length": 420, "uniprot_id": "BAAT_RAT", "protein_name": "Bile acid-CoA:amino acid N-acyltransferase", "refseq_ac": "NP_058996", "refseq_name": "bile acid-CoA:amino acid N-acyltransferase", "gene_name": "Baat", "gene_names_uniprotkb": "Baat", "gene_names_refseq": "Baat; kan-1", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q63276", "url": "https://www.uniprot.org/uniprotkb/Q63276" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "journal": "Nature communications", "date": "2012", "authors": "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV", "evidence": [ { "database": "UniProtKB", "id": "Q63276", "url": "https://www.uniprot.org/uniprotkb/Q63276" }, { "database": "iPTMnet", "id": "Q63276", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63276" } ], "reference": [ { "type": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" } ] } ], "crossref": [ { "id": "Q63276", "url": "https://www.uniprot.org/uniprotkb/Q63276", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q63276", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63276", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EHSWKEIQKFLKQHLNPGFN", "down_seq": "QL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q63276", "url": "https://www.uniprot.org/uniprotkb/Q63276" }, { "database": "PubMed", "id": "22673903", "url": "https://glygen.org/publication/PubMed/22673903" }, { "database": "iPTMnet", "id": "Q63276", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q63276" } ], "site_lbl": "Ser418" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "278", "end_pos": "278" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "418", "end_pos": "418" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q641Z6-1.355.355", "start_pos": 355, "end_pos": 355, "uniprot_canonical_ac": "Q641Z6-1", "length": 534, "uniprot_id": "EHD1_RAT", "protein_name": "EH domain-containing protein 1", "refseq_ac": "NP_001011939", "refseq_name": "EH domain-containing protein 1", "gene_name": "Ehd1", "gene_names_uniprotkb": "Ehd1", "gene_names_refseq": "Ehd1; RGD1306960", "species": [ { "name": "Rattus norvegicus", "taxid": 10116, "evidence": [ { "database": "UniProtKB", "id": "Q641Z6", "url": "https://www.uniprot.org/uniprotkb/Q641Z6" } ], "common_name": "Rat", "glygen_name": "Rat", "reference_species": "Rattus norvegicus [10116]" } ], "publication": [], "crossref": [ { "id": "Q641Z6", "url": "https://www.uniprot.org/uniprotkb/Q641Z6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGEIYQKIEREHQISSGDFP", "down_seq": "LRKMQELLQTQDFSKFQALK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q641Z6", "url": "https://www.uniprot.org/uniprotkb/Q641Z6" } ], "site_lbl": "Ser355" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "355", "end_pos": "355" }, { "start_pos": "456", "end_pos": "456" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] } ]